mRNA_P-littoralis_Contig90.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.74.1
Unique NamemRNA_P-littoralis_Contig90.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.74.1 vs. uniprot
Match: D8LHG7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG7_ECTSI)

HSP 1 Score: 550 bits (1418), Expect = 8.000e-189
Identity = 346/576 (60.07%), Postives = 381/576 (66.15%), Query Frame = 1 
Query:   19 SLASSRIEWSASRSLKKAKSTALLTLRIGEYVVKTQVVVQPVVKKVVREWKSFNAFRDRHKDQRRSKTLDWLEDRVQTMRREEGIKRQRQHTLRRKMMRAQAKRERAEKRTKNLLNETRTEFQRMADLSLATSLEKERVRDYFLDNNDGWQMQALTRHVEEDEDRQRQQREDAVADKVREGDVLRQAAADEYLAEYDRGEVITQATLRIMRRSGIIAGVNAPPPEIEEPPLETDNFLLLRLKAVPPPHVGGGIEGVEKETEA-------------GTGARNNHDGSGGGSTVLPSLQAAGAGNEHHRQRIVNRLKIPRTATTAPSSSLLPGXXXXXXXXXXXXXXXAATVTALGGAVKTGSAPAVTP--AERGSSSRGGAGAGAGTRRRAGGLNRGKKRSSGAFEVDLLRFRGVEEIRGWKIGAPGGESLAADFTCGACPRLSILRLSWCSLGDRGTRAIVRSLCGGGGASAAGRTLQELDLRGNAVTAVGLRMLGGALALGGLPALRALDLGCNSLRDEGGRVVAHRVLAGEGTWPFLARLDLSRNGMGDGGVEAVYKAVCAPGVRLAADVEMIS 1701
            S+ SS    SASR  KK K +A+LTLRIGEYVVKTQVV  PVV KVV+EWK FN FRDRH+ +RR+KTLDW EDRV TMRREE   RQR+   RR   RAQ              NETR EF+  ADL L TSLEKERVRDYFLDNNDGWQMQALTRHV+EDE            +KVR+GD  RQAAADEYLAEYDRGEVITQATLRIMRRSGI+AGVNAPP EI+E PLETD +LLLRLK                                 G G      G+GG  +  P+  AAG  N HH QR   +  +        S S+ P                   V ++      G+ P   P  AE    SRGG   G G R  AG  NRGKKRSS AFEVDLLRFRGVEE+RGWK+GAPGGESLA+D   GACPRLS+LRL WC LGDRG  AIVR+LCGGGGASAAGRTL+ LDLRGNAVTAVGLR+L G LA GGLPALRALDLG NSLRDEGG+ VAHR+LAG GTW  L RLDLS NGMG+GGVEAV+KAV APGV LA DVE IS
Sbjct:    2 SIGSSETAKSASRGFKKVKKSAMLTLRIGEYVVKTQVVA-PVVTKVVQEWKGFNRFRDRHQAERRNKTLDWFEDRVATMRREEENMRQRKQEQRRTKRRAQLXXXXXXXXXXXXXNETRAEFKHQADLRLTTSLEKERVRDYFLDNNDGWQMQALTRHVQEDEXXXXXXXXXXXXEKVRQGDANRQAAADEYLAEYDRGEVITQATLRIMRRSGIVAGVNAPPAEIKEEPLETDTYLLLRLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLGIGGIRQSSGTGG--SKPPAFPAAGERNGHH-QRAGRQTAVTEMPGKNSSRSVQP-------------------VQSVEATPNNGAGPTAGPVAAEGRKPSRGGGIRGGGGR--AGNHNRGKKRSSQAFEVDLLRFRGVEEMRGWKLGAPGGESLASDLASGACPRLSVLRLGWCLLGDRGACAIVRALCGGGGASAAGRTLRTLDLRGNAVTAVGLRVLAGPLAFGGLPALRALDLGSNSLRDEGGKAVAHRLLAGAGTWRRLTRLDLSGNGMGNGGVEAVFKAVTAPGVTLAPDVEFIS 552
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHG7_ECTSI8.000e-18960.07Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:331040..335103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHG7
PFAMsLRR_6
Model size1704
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.31e-189
EggNOG OGs2CKB5@1|root,2RYCE@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-11_004140.1
DescriptionLeucine Rich repeat
Cds size1704
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791805.0681314-CDS-P-littoralis_Contig90:331039..3311681680791805.0681314-CDS-P-littoralis_Contig90:331039..331168Pylaiella littoralis U1_48CDSP-littoralis_Contig90 331040..331168 +
1680791805.0807195-CDS-P-littoralis_Contig90:331817..3319601680791805.0807195-CDS-P-littoralis_Contig90:331817..331960Pylaiella littoralis U1_48CDSP-littoralis_Contig90 331818..331960 +
1680791805.091677-CDS-P-littoralis_Contig90:332543..3326401680791805.091677-CDS-P-littoralis_Contig90:332543..332640Pylaiella littoralis U1_48CDSP-littoralis_Contig90 332544..332640 +
1680791805.106133-CDS-P-littoralis_Contig90:333103..3333111680791805.106133-CDS-P-littoralis_Contig90:333103..333311Pylaiella littoralis U1_48CDSP-littoralis_Contig90 333104..333311 +
1680791805.120074-CDS-P-littoralis_Contig90:333976..3351031680791805.120074-CDS-P-littoralis_Contig90:333976..335103Pylaiella littoralis U1_48CDSP-littoralis_Contig90 333977..335103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.74.1prot_P-littoralis_Contig90.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 331040..335103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.74.1

>prot_P-littoralis_Contig90.74.1 ID=prot_P-littoralis_Contig90.74.1|Name=mRNA_P-littoralis_Contig90.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=568bp
MYKVDSSLASSRIEWSASRSLKKAKSTALLTLRIGEYVVKTQVVVQPVVK
KVVREWKSFNAFRDRHKDQRRSKTLDWLEDRVQTMRREEGIKRQRQHTLR
RKMMRAQAKRERAEKRTKNLLNETRTEFQRMADLSLATSLEKERVRDYFL
DNNDGWQMQALTRHVEEDEDRQRQQREDAVADKVREGDVLRQAAADEYLA
EYDRGEVITQATLRIMRRSGIIAGVNAPPPEIEEPPLETDNFLLLRLKAV
PPPHVGGGIEGVEKETEAGTGARNNHDGSGGGSTVLPSLQAAGAGNEHHR
QRIVNRLKIPRTATTAPSSSLLPGPPQGSSKAAARNSNNAATVTALGGAV
KTGSAPAVTPAERGSSSRGGAGAGAGTRRRAGGLNRGKKRSSGAFEVDLL
RFRGVEEIRGWKIGAPGGESLAADFTCGACPRLSILRLSWCSLGDRGTRA
IVRSLCGGGGASAAGRTLQELDLRGNAVTAVGLRMLGGALALGGLPALRA
LDLGCNSLRDEGGRVVAHRVLAGEGTWPFLARLDLSRNGMGDGGVEAVYK
AVCAPGVRLAADVEMISV
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mRNA from alignment at P-littoralis_Contig90:331040..335103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.74.1 ID=mRNA_P-littoralis_Contig90.74.1|Name=mRNA_P-littoralis_Contig90.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4064bp|location=Sequence derived from alignment at P-littoralis_Contig90:331040..335103+ (Pylaiella littoralis U1_48)
ATGTACAAGGTGGATTCATCCTTGGCAAGCAGCAGGATCGAGTGGTCCGC
CTCCCGCAGCCTCAAGAAGGCGAAGAGTACCGCCCTGCTGACCCTCAGGA
TCGGCGAATACGTCGTGAAAACGCAGGTGGTGTAGGAACAGTACAGATAA
GGGTTGTCGAAGCGTCGCCGCCGCCGCCGCCGCTGTCGTCTTCGTCGTCC
TCTTCGTCGTCGCCGTTGGTGTCGTCTTCTTACAGTCGTCCTTCGCCCCC
CTTCGTCCCCTCACCACACGCAAAACCACAGAGCGGGGTGGGTTTTGTAA
AACTCCGGCGATTGCCGACGAGCGCCCCGACCATCCCCACGTCTACTTCT
ACTCGAAAGCAACAAAGTCTTAAAAAACTCCCCCCCCTCGCGACCCACTC
TCCTCAGGAACCTTTAGTAGTGAGCAGGGCCGGGGACACGTTCGACTTCG
CGGCTCACCTACTAATGTTTCGGTACATCAGTAGCTTGAGAAAAAAAAAA
TTGTCGCCCCACTACAGTTGTTTGGATAAGTGGTGGATCCACAGATATAT
CAACTTCACTCGATTGAGAGGCTGACGCTACGTCATTTTTTGCGTTTCAG
TTCGCGTTGCTCGTTGTGTTTACGCACAATCAACTCTTCGTCCTACTATG
TGCCCATCAACCTGTAACAAAAATGCACAGGTCCCTCTTGCGATTATTTC
ACACACTTGATTCGTATGTACGTATAATGACATATGGTATCGAATGAGAA
AAAATTCACGACCCTAAATATATCGTAGGTTGTCCAGCCGGTGGTGAAGA
AGGTCGTCCGAGAGTGGAAGAGCTTCAACGCCTTCAGAGATCGCCACAAG
GATCAGCGCCGCAGCAAGACCCTGGACTGGCTGGAGGACCGCGTGCAGAC
CATGCGGCGAGAGGAGGGCATGTAAGAAGGGGCTGACGCTTGATGGACTG
CTGTGTGGCAATAGTTGCCGTTACTGTCGGAGCGTGTCCAGAGCCCCAGG
AGAGCAGGATAAGAAATAAAAAGGGTTTCAGGTGTGAAAAGAGGGAGGAA
TCGTCCTCGACCGACGTTGGGAGATGCCTATCATACCCTTTATGAAGGTT
GCCCACTCCTTTTTAGGGAGGTCACCTCCACACAGGCGGCGGTAAGTAGC
GAATAGCGGCGATCCGAATAATCGCTGTACAGTATGTAAGCAGTGTTACG
TTTTTGTTCTCGTCGGTTGTCGTGCCGTCGGTCGGACAAAACAAACGTTT
TTTTGTGTTTCGCGGTCGGTCGTGTTTGACGAAAACGACTGTGCAATAAT
TTAGTCACGCGTGTTGGTTTGGGCCCAGGTCACGCCGTTGAGGTCCACAC
ACATATACTTGCTGAAGAAGTCTGTAGGTCATCCAGAACTATTCGGGGTG
CACAACAAGCAATGTCTGACACAGCAGTATGATGGTGGGCACAATCGTTA
TCATCGCTTCCGCGCGGGGGTGGGCGGTGTTATTTTTGGTGGGGTCGGTG
GCAGCAAGAGGCAGCGGCAGCACACCTTGCGGCGAAAAATGATGCGCGCC
CAAGCCAAACGAGAACGCGCGGAAAAGCGGACGAAAAATCTCCTGAACGA
GGTGTGTGCGACTGTGCATGCATACAGTAGTAGTAGAATACGTGTGATCA
ATGTTGCGGTTGCTTTTTCGTATGCCTGGCCATTGATTGATGGTGGACAT
CTTAGGTGGCGATCGCGATTGTTTTGTTTTTCAAGTCCAGGGCGAACCGT
GCAATATTAGTATTTTGGGAAATATTTTGTGTTCGTTCTTGTTTCCTCTG
TCATGGGGGCACCAGTATTTATTTCTTCTCGCACGCGAGGCGACAGAAGG
AATCCAACACTATCGTTGTTTCTCTTCAATACGGCTGTGGATAGGAATGT
GCCCATACTATTGTGGGGGGTAAAATGATCTAAGTTAGTTGTCGCGAAGA
GGGGGAGTTCCGAAAGGGGCTGAATCAACCTAACCACCACCGAAAGTAAA
TTACGTATGGTGTGGACCTGTATCCCCTCGGGGGGGGGGGGGGGGGATCC
TCGTGAAATTGCAGACGCGCACGGAGTTCCAGCGCATGGCCGACTTATCT
CTGGCGACGTCTCTCGAAAAGGAGAGAGTTCGAGACTACTTCCTCGACAA
CAACGACGGCTGGCAGATGCAGGCCCTGACGAGGCACGTGGAGGAGGACG
AGGACCGCCAGCGGCAGCAGAGAGAGGATGCGGTGGCCGACAAAGTCCGA
GAGGGCGACGTACTGCGGCAAGGTGGGGGGGGGGGTGCTCATGATGACAC
ATGCCAGATGGTGGTGGTGGCGGGGGGCGCGGGGGGGTTATTCTCGTTTT
CCTCTACCTCCTTTTTCTGGCGTTGTAAAGGCACATCTTGTGCCTCTGTG
TGAGTTTTAGTCATCCTTGCATAGCCCCCTAAAAAAACTATCGTGAGAGA
CTTTTGTAGCTAAGATTACTAGGAGGGAGTTTAAGAGAGGTGGATTGCTC
CGTCGAAAAGGAGTGGGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGT
AGAGGTGGACGCACGATGTATAAGGCAGCGTGCGGAATCCATGCACCGCT
TCACCTGTCTGTGTAGAGCTGGTACATAATACTCGGTACCTTTTCACGCT
CACGACAACCATCGGCACCACCCCGCTGCCACGTTGTCGAGCAACGCACT
TTACATTTTCCCTGCCAAACACACCTCTTACTCTTTCCCCGTATGATACA
ATAAGCGGGCGGGGAAAGTTCGATTCCCCCTTCTCTCTCATCCTTCATTC
ATACAATCCCCGCTGCTTGCAGCAAAAAGTTTTCACGTTGCGCGTGTGCT
TATTGGTTCTACCACCCCCTACGCTCGCCGTCCACAATCTACACACCTTT
TTTACGCACAAATGTACCCTTTTTACGTATTTACCAGCCGCGGCCGACGA
GTACCTCGCCGAGTATGACCGGGGAGAAGTGATCACCCAAGCCACGCTCC
GCATCATGCGTCGGTCGGGCATCATCGCGGGGGTCAACGCGCCCCCGCCG
GAGATCGAGGAGCCGCCTCTAGAGACCGACAATTTCCTCCTCTTACGGCT
CAAGGCGGTGCCGCCGCCGCACGTCGGAGGAGGCATCGAAGGCGTCGAGA
AGGAGACGGAGGCGGGGACGGGGGCGAGGAACAACCACGACGGGAGCGGC
GGCGGGTCAACGGTGTTGCCGTCTTTACAAGCGGCGGGAGCGGGGAATGA
GCACCACCGACAGCGCATAGTAAATCGCCTCAAGATACCGAGAACTGCGA
CTACCGCCCCCTCTTCTTCTCTACTGCCCGGACCACCTCAAGGTTCTTCC
AAGGCTGCCGCCCGAAATAGCAATAACGCCGCTACCGTGACCGCACTAGG
AGGGGCGGTAAAAACGGGATCAGCACCGGCGGTGACACCAGCCGAAAGAG
GGAGTTCATCTCGAGGTGGTGCTGGTGCTGGTGCTGGAACGAGGAGACGT
GCGGGCGGCCTCAACAGAGGAAAAAAACGAAGCTCGGGGGCTTTCGAGGT
CGACCTGCTGCGGTTCCGCGGCGTGGAAGAAATCCGGGGATGGAAGATAG
GCGCCCCCGGCGGAGAAAGCCTCGCCGCGGACTTCACCTGTGGCGCTTGT
CCCCGCCTGAGCATTCTCCGGCTGAGCTGGTGCTCGTTGGGTGACCGAGG
CACCCGCGCCATCGTCCGCTCGCTCTGTGGTGGCGGCGGCGCCTCTGCCG
CGGGCAGAACCCTCCAGGAGCTGGACTTGCGCGGAAACGCGGTGACCGCG
GTCGGCTTGCGGATGCTCGGGGGCGCTCTTGCCCTGGGCGGGCTTCCGGC
GCTCCGAGCGCTTGATTTGGGGTGCAACTCGCTGCGCGACGAGGGAGGGA
GAGTGGTGGCGCACCGGGTGCTAGCCGGGGAGGGGACGTGGCCGTTCCTC
GCGAGGCTAGACTTGTCCAGGAACGGCATGGGGGACGGTGGCGTTGAGGC
GGTGTACAAGGCTGTCTGCGCCCCCGGCGTGCGGCTTGCTGCCGATGTCG
AGATGATTAGCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:331040..335103+

>mRNA_P-littoralis_Contig90.74.1 ID=mRNA_P-littoralis_Contig90.74.1|Name=mRNA_P-littoralis_Contig90.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1704bp|location=Sequence derived from alignment at P-littoralis_Contig90:331040..335103+ (Pylaiella littoralis U1_48)
ATGTACAAGGTGGATTCATCCTTGGCAAGCAGCAGGATCGAGTGGTCCGC
CTCCCGCAGCCTCAAGAAGGCGAAGAGTACCGCCCTGCTGACCCTCAGGA
TCGGCGAATACGTCGTGAAAACGCAGGTGGTTGTCCAGCCGGTGGTGAAG
AAGGTCGTCCGAGAGTGGAAGAGCTTCAACGCCTTCAGAGATCGCCACAA
GGATCAGCGCCGCAGCAAGACCCTGGACTGGCTGGAGGACCGCGTGCAGA
CCATGCGGCGAGAGGAGGGCATCAAGAGGCAGCGGCAGCACACCTTGCGG
CGAAAAATGATGCGCGCCCAAGCCAAACGAGAACGCGCGGAAAAGCGGAC
GAAAAATCTCCTGAACGAGACGCGCACGGAGTTCCAGCGCATGGCCGACT
TATCTCTGGCGACGTCTCTCGAAAAGGAGAGAGTTCGAGACTACTTCCTC
GACAACAACGACGGCTGGCAGATGCAGGCCCTGACGAGGCACGTGGAGGA
GGACGAGGACCGCCAGCGGCAGCAGAGAGAGGATGCGGTGGCCGACAAAG
TCCGAGAGGGCGACGTACTGCGGCAAGCCGCGGCCGACGAGTACCTCGCC
GAGTATGACCGGGGAGAAGTGATCACCCAAGCCACGCTCCGCATCATGCG
TCGGTCGGGCATCATCGCGGGGGTCAACGCGCCCCCGCCGGAGATCGAGG
AGCCGCCTCTAGAGACCGACAATTTCCTCCTCTTACGGCTCAAGGCGGTG
CCGCCGCCGCACGTCGGAGGAGGCATCGAAGGCGTCGAGAAGGAGACGGA
GGCGGGGACGGGGGCGAGGAACAACCACGACGGGAGCGGCGGCGGGTCAA
CGGTGTTGCCGTCTTTACAAGCGGCGGGAGCGGGGAATGAGCACCACCGA
CAGCGCATAGTAAATCGCCTCAAGATACCGAGAACTGCGACTACCGCCCC
CTCTTCTTCTCTACTGCCCGGACCACCTCAAGGTTCTTCCAAGGCTGCCG
CCCGAAATAGCAATAACGCCGCTACCGTGACCGCACTAGGAGGGGCGGTA
AAAACGGGATCAGCACCGGCGGTGACACCAGCCGAAAGAGGGAGTTCATC
TCGAGGTGGTGCTGGTGCTGGTGCTGGAACGAGGAGACGTGCGGGCGGCC
TCAACAGAGGAAAAAAACGAAGCTCGGGGGCTTTCGAGGTCGACCTGCTG
CGGTTCCGCGGCGTGGAAGAAATCCGGGGATGGAAGATAGGCGCCCCCGG
CGGAGAAAGCCTCGCCGCGGACTTCACCTGTGGCGCTTGTCCCCGCCTGA
GCATTCTCCGGCTGAGCTGGTGCTCGTTGGGTGACCGAGGCACCCGCGCC
ATCGTCCGCTCGCTCTGTGGTGGCGGCGGCGCCTCTGCCGCGGGCAGAAC
CCTCCAGGAGCTGGACTTGCGCGGAAACGCGGTGACCGCGGTCGGCTTGC
GGATGCTCGGGGGCGCTCTTGCCCTGGGCGGGCTTCCGGCGCTCCGAGCG
CTTGATTTGGGGTGCAACTCGCTGCGCGACGAGGGAGGGAGAGTGGTGGC
GCACCGGGTGCTAGCCGGGGAGGGGACGTGGCCGTTCCTCGCGAGGCTAG
ACTTGTCCAGGAACGGCATGGGGGACGGTGGCGTTGAGGCGGTGTACAAG
GCTGTCTGCGCCCCCGGCGTGCGGCTTGCTGCCGATGTCGAGATGATTAG
CGTG
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