prot_P-littoralis_Contig90.74.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig90.74.1
Unique Name	prot_P-littoralis_Contig90.74.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	568

Homology

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BLAST of mRNA_P-littoralis_Contig90.74.1 vs. uniprot
Match: D8LHG7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG7_ECTSI)

HSP 1 Score: 550 bits (1418), Expect = 8.000e-189
Identity = 346/576 (60.07%), Postives = 381/576 (66.15%), Query Frame = 0

Query:    7 SLASSRIEWSASRSLKKAKSTALLTLRIGEYVVKTQVVVQPVVKKVVREWKSFNAFRDRHKDQRRSKTLDWLEDRVQTMRREEGIKRQRQHTLRRKMMRAQAKRERAEKRTKNLLNETRTEFQRMADLSLATSLEKERVRDYFLDNNDGWQMQALTRHVEEDEDRQRQQREDAVADKVREGDVLRQAAADEYLAEYDRGEVITQATLRIMRRSGIIAGVNAPPPEIEEPPLETDNFLLLRLKAVPPPHVGGGIEGVEKETEA-------------GTGARNNHDGSGGGSTVLPSLQAAGAGNEHHRQRIVNRLKIPRTATTAPSSSLLPGXXXXXXXXXXXXXXXAATVTALGGAVKTGSAPAVTP--AERGSSSRGGAGAGAGTRRRAGGLNRGKKRSSGAFEVDLLRFRGVEEIRGWKIGAPGGESLAADFTCGACPRLSILRLSWCSLGDRGTRAIVRSLCGGGGASAAGRTLQELDLRGNAVTAVGLRMLGGALALGGLPALRALDLGCNSLRDEGGRVVAHRVLAGEGTWPFLARLDLSRNGMGDGGVEAVYKAVCAPGVRLAADVEMIS 567
            S+ SS    SASR  KK K +A+LTLRIGEYVVKTQVV  PVV KVV+EWK FN FRDRH+ +RR+KTLDW EDRV TMRREE   RQR+   RR   RAQ              NETR EF+  ADL L TSLEKERVRDYFLDNNDGWQMQALTRHV+EDE            +KVR+GD  RQAAADEYLAEYDRGEVITQATLRIMRRSGI+AGVNAPP EI+E PLETD +LLLRLK                                 G G      G+GG  +  P+  AAG  N HH QR   +  +        S S+ P                   V ++      G+ P   P  AE    SRGG   G G R  AG  NRGKKRSS AFEVDLLRFRGVEE+RGWK+GAPGGESLA+D   GACPRLS+LRL WC LGDRG  AIVR+LCGGGGASAAGRTL+ LDLRGNAVTAVGLR+L G LA GGLPALRALDLG NSLRDEGG+ VAHR+LAG GTW  L RLDLS NGMG+GGVEAV+KAV APGV LA DVE IS
Sbjct:    2 SIGSSETAKSASRGFKKVKKSAMLTLRIGEYVVKTQVVA-PVVTKVVQEWKGFNRFRDRHQAERRNKTLDWFEDRVATMRREEENMRQRKQEQRRTKRRAQLXXXXXXXXXXXXXNETRAEFKHQADLRLTTSLEKERVRDYFLDNNDGWQMQALTRHVQEDEXXXXXXXXXXXXEKVRQGDANRQAAADEYLAEYDRGEVITQATLRIMRRSGIVAGVNAPPAEIKEEPLETDTYLLLRLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLGIGGIRQSSGTGG--SKPPAFPAAGERNGHH-QRAGRQTAVTEMPGKNSSRSVQP-------------------VQSVEATPNNGAGPTAGPVAAEGRKPSRGGGIRGGGGR--AGNHNRGKKRSSQAFEVDLLRFRGVEEMRGWKLGAPGGESLASDLASGACPRLSVLRLGWCLLGDRGACAIVRALCGGGGASAAGRTLRTLDLRGNAVTAVGLRVLAGPLAFGGLPALRALDLGSNSLRDEGGKAVAHRLLAGAGTWRRLTRLDLSGNGMGNGGVEAVFKAVTAPGVTLAPDVEFIS 552

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig90.74.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig90.74.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LHG7_ECTSI	8.000e-189	60.07	Hypothetical leucine rich repeat protein n=2 Tax=E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 158..178
None	No IPR available	COILS	Coil	Coil	coord: 96..123
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 430..457 e-value: 72.0 score: 4.0 coord: 495..522 e-value: 0.65 score: 18.5 coord: 527..554 e-value: 57.0 score: 4.8 coord: 465..492 e-value: 0.69 score: 18.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..388
None	No IPR available	PANTHER	PTHR24107	YNEIN REGULATORY COMPLEX SUBUNIT 5	coord: 292..548
None	No IPR available	PANTHER	PTHR24107:SF2	MAP-HOMOLOGOUS PROTEIN 1	coord: 292..548
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 418..553
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 430..451 e-value: 0.76 score: 10.0 coord: 530..547 e-value: 0.044 score: 13.9 coord: 466..486 e-value: 0.024 score: 14.7 coord: 498..514 e-value: 0.12 score: 12.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 408..557 e-value: 3.2E-20 score: 74.0

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig90	contig	P-littoralis_Contig90:331040..335103 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig90.74.1	mRNA_P-littoralis_Contig90.74.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig90 331040..335103 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig90.74.1 ID=prot_P-littoralis_Contig90.74.1|Name=mRNA_P-littoralis_Contig90.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=568bp
MYKVDSSLASSRIEWSASRSLKKAKSTALLTLRIGEYVVKTQVVVQPVVK
KVVREWKSFNAFRDRHKDQRRSKTLDWLEDRVQTMRREEGIKRQRQHTLR
RKMMRAQAKRERAEKRTKNLLNETRTEFQRMADLSLATSLEKERVRDYFL
DNNDGWQMQALTRHVEEDEDRQRQQREDAVADKVREGDVLRQAAADEYLA
EYDRGEVITQATLRIMRRSGIIAGVNAPPPEIEEPPLETDNFLLLRLKAV
PPPHVGGGIEGVEKETEAGTGARNNHDGSGGGSTVLPSLQAAGAGNEHHR
QRIVNRLKIPRTATTAPSSSLLPGPPQGSSKAAARNSNNAATVTALGGAV
KTGSAPAVTPAERGSSSRGGAGAGAGTRRRAGGLNRGKKRSSGAFEVDLL
RFRGVEEIRGWKIGAPGGESLAADFTCGACPRLSILRLSWCSLGDRGTRA
IVRSLCGGGGASAAGRTLQELDLRGNAVTAVGLRMLGGALALGGLPALRA
LDLGCNSLRDEGGRVVAHRVLAGEGTWPFLARLDLSRNGMGDGGVEAVYK
AVCAPGVRLAADVEMISV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf