mRNA_P-littoralis_Contig890.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig890.6.1
Unique NamemRNA_P-littoralis_Contig890.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 464 bits (1193), Expect = 2.940e-154
Identity = 228/297 (76.77%), Postives = 252/297 (84.85%), Query Frame = 1
Query:    1 WGADWGLTGSDADGFTFFTSARGAHVEVCLGPTKLTGVGPITSITFNGHCVRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGTVGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAVRPRLESASKAESHEFKNNVFMTSTQK-----------DHKLRTMKADLKRERDAMARLRGRIMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL 858
            WGADWG TG+DADGFTFFT+ARGAHVEVCLGPTKL GVGPITSITFNGHCVRNH ALRRFT+I AEDDL  LLNVVWHT+PCQGVSQQH+ EDAKMPAGAAD+FPSLVRQAQR LE +P++PF  RGRW +AFVEGLLS P GVSGVLGTVGGHSVPGHG VGGHKVFW+KGCVG ATPFQG NSVPRCQGCRG VREA+RPRLE+ASKAES +   N++MTS QK           DHKL +  A L RER+A  RLR RI+SMRKECVR+ VEQGEALHKF+ DAETK+++ SRL
Sbjct:  229 WGADWGFTGNDADGFTFFTAARGAHVEVCLGPTKLKGVGPITSITFNGHCVRNHDALRRFTAIGAEDDLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRGFVREALRPRLENASKAESLKSSKNIYMTSAQKVDETIVLAPQRDHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRL 525          
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 2.060e-145
Identity = 222/301 (73.75%), Postives = 247/301 (82.06%), Query Frame = 1
Query:    1 WGADWGLTGSDADGFTFFTSARGAHVEVCLGPTKLTGVGPITSITFNGHCVRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGTVGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAVRPRLESASKAESHEFKNNVFMTSTQK---------------DHKLRTMKADLKRERDAMARLRGRIMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL 858
            WGADWG TG+DADGFTFFT+ARGAHVEVCLGPTKL GVGPITSI  NGHCVRNH ALRRFT+I AEDDL  LLNVVW+T+PCQGVSQQH+ EDAKMPAGAAD+FPSLVRQAQR LE +P++PF  RGRW +AFVEGLLS P GVSGVLGTVGGHSVPGHG VGGHKVFW+KGCVG ATPFQG NSVPRCQGCRG VREA+RPRL++ASKAES +   N++MT  QK                 KL +  ADL RER   ARLR RI+SMRKECVR+ VEQGEALHKF+ DAETK+++ SRL
Sbjct:  136 WGADWGFTGNDADGFTFFTAARGAHVEVCLGPTKLKGVGPITSI--NGHCVRNHDALRRFTAIGAEDDLTELLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRGFVREALRPRLQNASKAESLKSSKNIYMTRAQKVDVTIVSAPQRVPRITSKLWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRL 434          
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 5.000e-138
Identity = 201/260 (77.31%), Postives = 224/260 (86.15%), Query Frame = 1
Query:   79 EVCLGPTKLTGVGPITSITFNGHCVRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGTVGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAVRPRLESASKAESHEFKNNVFMTSTQKDHKLRTMKADLKRERDAMARLRGRIMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL 858
            +VCLGPTKL GVGPITSITFNGHCVRNH ALRRFT+I AE DL  LLNVVWHT+PCQGVSQQH+ EDA MPAGAAD+FPSLVRQAQ  LE +P++PF  RGRW +AFVEGLLS P GVSGVLGTVG HSVPGHG VGGHKVFW+KGCVG ATPFQG NSVPRCQGCR  VREA+RPRLE+ASKAES +   N++MTS QKDHKL +  ADL RER+A ARLR RI+SMRKECVR+ VEQGEALHKF+ DAETK+++ SRL
Sbjct:  133 KVCLGPTKLKGVGPITSITFNGHCVRNHDALRRFTAIGAEGDLTELLNVVWHTLPCQGVSQQHVREDANMPAGAADVFPSLVRQAQWNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGAHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRDFVREALRPRLENASKAESLKSSKNLYMTSAQKDHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRL 392          
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 6.470e-61
Identity = 98/121 (80.99%), Postives = 108/121 (89.26%), Query Frame = 1
Query:    1 WGADWGLTGSDADGFTFFTSARGAHVEVCLGPTKLTGVGPITSITFNGHCVRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSM 363
            WGA WG TGSDADGFTFFTSARGAHVEVCLGPT L GVGPI SITFNG CV+NH ALRRFT++ A+DDL  LLNVVWHT+PCQGVSQQH+ EDAKMPAGAAD+FPSLVRQAQR LE +P++
Sbjct:  121 WGAHWGFTGSDADGFTFFTSARGAHVEVCLGPTSLKGVGPIASITFNGRCVKNHDALRRFTAVGADDDLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTL 241          
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.920e-30
Identity = 87/263 (33.08%), Postives = 139/263 (52.85%), Query Frame = 1
Query:   79 EVCLGPTKLTGVGPITSITFNGHCVRNHAALR---RFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGTVGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAVRPRLESASKAESHEFKNNVFMTSTQKDHKLRTMKADLKRERDAMARLRGRIMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL 858
            +V +    + G G I  I+ NG  V +H A+    RF  I + +DL  +L +V   +PC G ++QH+  + ++P G+A+ + S+VR A+R L  D  +P  G  RW +A V G+L    GVSGVLGTVG H+V          V WSK C G A+ +       RC  C+   R+  +PR+ + +  E      N  ++S QK  KL  +   +K   +   R   ++   R+EC+    +QG+A+HKF+ D ET++++  +L
Sbjct:    3 QVVVEKPDIQGRGSIRYISMNGLDVTSHDAISTVGRF--IYSLEDLKQVLRIVDSVLPCLGYARQHMEYERRLPTGSAEAWGSVVRGAERALLGD-HVPVMGE-RWRNAPVRGVLKGSGGVSGVLGTVG-HTVD---------VLWSKDCTGVASDYASGGQ--RCSRCKKFWRDTAKPRITTLT-GEPKPNTANYRLSSGQKTTKLSQLATSMKAANEPAERWHRKVKQYREECIEFPKDQGDAVHKFLIDQETRELLDKKL 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE2.940e-15476.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.060e-14573.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI5.000e-13877.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE6.470e-6180.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE2.920e-3033.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig890contigP-littoralis_Contig890:3842..5596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size860
Hectar predicted targeting categoryother localisation
Exons4
Cds size858
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791779.8409388-CDS-P-littoralis_Contig890:3842..40221680791779.8409388-CDS-P-littoralis_Contig890:3842..4022Pylaiella littoralis U1_48CDSP-littoralis_Contig890 3843..4022 -
1680791779.8599324-CDS-P-littoralis_Contig890:4175..46401680791779.8599324-CDS-P-littoralis_Contig890:4175..4640Pylaiella littoralis U1_48CDSP-littoralis_Contig890 4176..4640 -
1680791779.8723032-CDS-P-littoralis_Contig890:4957..50891680791779.8723032-CDS-P-littoralis_Contig890:4957..5089Pylaiella littoralis U1_48CDSP-littoralis_Contig890 4958..5089 -
1680791779.884856-CDS-P-littoralis_Contig890:5515..55961680791779.884856-CDS-P-littoralis_Contig890:5515..5596Pylaiella littoralis U1_48CDSP-littoralis_Contig890 5516..5596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig890.6.1prot_P-littoralis_Contig890.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig890 3843..5596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig890.6.1

>prot_P-littoralis_Contig890.6.1 ID=prot_P-littoralis_Contig890.6.1|Name=mRNA_P-littoralis_Contig890.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=286bp
WGADWGLTGSDADGFTFFTSARGAHVEVCLGPTKLTGVGPITSITFNGHC
VRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGA
ADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGT
VGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAV
RPRLESASKAESHEFKNNVFMTSTQKDHKLRTMKADLKRERDAMARLRGR
IMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL
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mRNA from alignment at P-littoralis_Contig890:3842..5596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig890.6.1 ID=mRNA_P-littoralis_Contig890.6.1|Name=mRNA_P-littoralis_Contig890.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1755bp|location=Sequence derived from alignment at P-littoralis_Contig890:3842..5596- (Pylaiella littoralis U1_48)
TGGGGCGCCGATTGGGGTTTAACGGGCAGTGATGCTGACGGATTCACCTT CTTTACTTCCGCAAGGGGTGCACATGTTGAGGTCAGTGCCATCCACTCTG AGTGTTTGTATACAGGTGCCCGGGATGATACCGATACTGGAATGTTAACC ATGTCGCACATTATTTGATGTGCACAAGCATGTCACACGTTGCAGTGTGT GTGTGGGCCAGCCGAGCAAGCCTTCATGATGCACCCGTTCAAACTGAACG GCCGAACCTCTAGGGTCCACTGGTTTGCCTCTTTGCTGTTTGGTTGAGAA GGGCTACTCCGTGCCTGGGTAGTTGTCGACTGTGTAGTCGAAGTTTGTCT ACTCGTTGATAAATCGTCGTCCATCGCCTAGACCTCCGGCATCTAAGAAA CTCGGTTCACTTTAGTAGTCGGTCAACCTCGACTTGCCAGTGCATCCATT TGTGTGAAACTGACCACACCAAACCTCTTTTTTTTTTTTTTGTGAAACTT GGACCAGGTATGCCTTGGACCCACGAAGCTGACAGGGGTTGGACCGATTA CATCCATCACGTTCAACGGGCACTGCGTTCGGAACCACGCCGCTCTCCGC AGGTTTACGTCAATCCGCGCGGAGGATGATTTGCCGCATGTGAGAATCAA GTCATGTTCTTGAGAGCGCTTGAAACAGCACCAGTGTCCACCCGCTCCAA CTAATGTTCCGAGGGCATATGGAGAGGTCTTGCCATGTCCGGTTTCGCGT AGGTCGTGCCGCGAGGGAGACCTCAATGATGAGCACAATCACCCGAGCAC TCCTTAGTGTACCTCGACCTTTCTGCTCTACCTTTATCATAATAATACAA TAGTGCATCCCAAAACTTGCGAGAGTTAGGGTATGTCGCAACATTTACCG GCCCCGACGATGGTTTGTGTTGCACTCCTTTTTTTTTTCTCTGTGTACGT TTGCAGCTTCTCAACGTGGTGTGGCATACGGTTCCCTGCCAAGGCGTCTC TCAGCAGCATATCATGGAGGACGCCAAGATGCCAGCAGGGGCCGCCGACC TTTTCCCGAGCCTGGTCCGCCAGGCGCAACGGACCCTTGAGAAGGATCCG TCTATGCCGTTTGACGGGCGGGGACGATGGAATAGCGCGTTTGTAGAGGG CCTGTTGTCTGCCCCCAAAGGAGTTTCCGGTGTGTTGGGCACCGTCGGAG GTCACAGCGTTCCGGGTCATGGCAGGGTTGGAGGTCACAAGGTGTTTTGG TCGAAAGGATGTGTTGGATTTGCTACTCCATTCCAAGGCCAAAACTCGGT GCCCCGGTGTCAGGGGTGTAGAGGTTTAGTGCGGGAAGCCGTGCGACCGC GGCTTGAGAGCGCATCCAAGGCCGAGTCCCACGAGTTCAAGAACAACGTG TTCATGACCAGCACACAAAAGGTCGGTGTGATTACCGTATTTGTGCCTTG ATGGTTTGATAGCTTTGTCATGTTGAAAGTTTTATTGCACGACAGTAGTC GCGTATCATGTTCTTCTCCTGGATGTCGTGATCCAGAAACGTGATACAAT CGTTCGATTCCCTCGAATACCCAGGACCACAAGCTCAGGACTATGAAGGC TGACTTGAAGAGAGAGCGAGATGCGATGGCCCGGCTGCGTGGACGCATCA TGTCCATGAGGAAGGAGTGTGTTCGTCTTACCGTGGAGCAAGGGGAGGCT CTTCACAAGTTCATGACCGACGCCGAGACGAAGGACATGATGCAGTCGAG ACTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig890:3842..5596-

>mRNA_P-littoralis_Contig890.6.1 ID=mRNA_P-littoralis_Contig890.6.1|Name=mRNA_P-littoralis_Contig890.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig890:3842..5596- (Pylaiella littoralis U1_48)
TGGGGCGCCGATTGGGGTTTAACGGGCAGTGATGCTGACGGATTCACCTT
CTTTACTTCCGCAAGGGGTGCACATGTTGAGGTATGCCTTGGACCCACGA
AGCTGACAGGGGTTGGACCGATTACATCCATCACGTTCAACGGGCACTGC
GTTCGGAACCACGCCGCTCTCCGCAGGTTTACGTCAATCCGCGCGGAGGA
TGATTTGCCGCATCTTCTCAACGTGGTGTGGCATACGGTTCCCTGCCAAG
GCGTCTCTCAGCAGCATATCATGGAGGACGCCAAGATGCCAGCAGGGGCC
GCCGACCTTTTCCCGAGCCTGGTCCGCCAGGCGCAACGGACCCTTGAGAA
GGATCCGTCTATGCCGTTTGACGGGCGGGGACGATGGAATAGCGCGTTTG
TAGAGGGCCTGTTGTCTGCCCCCAAAGGAGTTTCCGGTGTGTTGGGCACC
GTCGGAGGTCACAGCGTTCCGGGTCATGGCAGGGTTGGAGGTCACAAGGT
GTTTTGGTCGAAAGGATGTGTTGGATTTGCTACTCCATTCCAAGGCCAAA
ACTCGGTGCCCCGGTGTCAGGGGTGTAGAGGTTTAGTGCGGGAAGCCGTG
CGACCGCGGCTTGAGAGCGCATCCAAGGCCGAGTCCCACGAGTTCAAGAA
CAACGTGTTCATGACCAGCACACAAAAGGACCACAAGCTCAGGACTATGA
AGGCTGACTTGAAGAGAGAGCGAGATGCGATGGCCCGGCTGCGTGGACGC
ATCATGTCCATGAGGAAGGAGTGTGTTCGTCTTACCGTGGAGCAAGGGGA
GGCTCTTCACAAGTTCATGACCGACGCCGAGACGAAGGACATGATGCAGT
CGAGACTC
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