mRNA_P-littoralis_Contig890.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 464 bits (1193), Expect = 2.940e-154 Identity = 228/297 (76.77%), Postives = 252/297 (84.85%), Query Frame = 1
Query: 1 WGADWGLTGSDADGFTFFTSARGAHVEVCLGPTKLTGVGPITSITFNGHCVRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGTVGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAVRPRLESASKAESHEFKNNVFMTSTQK-----------DHKLRTMKADLKRERDAMARLRGRIMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL 858
WGADWG TG+DADGFTFFT+ARGAHVEVCLGPTKL GVGPITSITFNGHCVRNH ALRRFT+I AEDDL LLNVVWHT+PCQGVSQQH+ EDAKMPAGAAD+FPSLVRQAQR LE +P++PF RGRW +AFVEGLLS P GVSGVLGTVGGHSVPGHG VGGHKVFW+KGCVG ATPFQG NSVPRCQGCRG VREA+RPRLE+ASKAES + N++MTS QK DHKL + A L RER+A RLR RI+SMRKECVR+ VEQGEALHKF+ DAETK+++ SRL
Sbjct: 229 WGADWGFTGNDADGFTFFTAARGAHVEVCLGPTKLKGVGPITSITFNGHCVRNHDALRRFTAIGAEDDLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRGFVREALRPRLENASKAESLKSSKNIYMTSAQKVDETIVLAPQRDHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRL 525
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 443 bits (1139), Expect = 2.060e-145 Identity = 222/301 (73.75%), Postives = 247/301 (82.06%), Query Frame = 1
Query: 1 WGADWGLTGSDADGFTFFTSARGAHVEVCLGPTKLTGVGPITSITFNGHCVRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGTVGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAVRPRLESASKAESHEFKNNVFMTSTQK---------------DHKLRTMKADLKRERDAMARLRGRIMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL 858
WGADWG TG+DADGFTFFT+ARGAHVEVCLGPTKL GVGPITSI NGHCVRNH ALRRFT+I AEDDL LLNVVW+T+PCQGVSQQH+ EDAKMPAGAAD+FPSLVRQAQR LE +P++PF RGRW +AFVEGLLS P GVSGVLGTVGGHSVPGHG VGGHKVFW+KGCVG ATPFQG NSVPRCQGCRG VREA+RPRL++ASKAES + N++MT QK KL + ADL RER ARLR RI+SMRKECVR+ VEQGEALHKF+ DAETK+++ SRL
Sbjct: 136 WGADWGFTGNDADGFTFFTAARGAHVEVCLGPTKLKGVGPITSI--NGHCVRNHDALRRFTAIGAEDDLTELLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRGFVREALRPRLQNASKAESLKSSKNIYMTRAQKVDVTIVSAPQRVPRITSKLWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRL 434
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI) HSP 1 Score: 409 bits (1052), Expect = 5.000e-138 Identity = 201/260 (77.31%), Postives = 224/260 (86.15%), Query Frame = 1
Query: 79 EVCLGPTKLTGVGPITSITFNGHCVRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGTVGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAVRPRLESASKAESHEFKNNVFMTSTQKDHKLRTMKADLKRERDAMARLRGRIMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL 858
+VCLGPTKL GVGPITSITFNGHCVRNH ALRRFT+I AE DL LLNVVWHT+PCQGVSQQH+ EDA MPAGAAD+FPSLVRQAQ LE +P++PF RGRW +AFVEGLLS P GVSGVLGTVG HSVPGHG VGGHKVFW+KGCVG ATPFQG NSVPRCQGCR VREA+RPRLE+ASKAES + N++MTS QKDHKL + ADL RER+A ARLR RI+SMRKECVR+ VEQGEALHKF+ DAETK+++ SRL
Sbjct: 133 KVCLGPTKLKGVGPITSITFNGHCVRNHDALRRFTAIGAEGDLTELLNVVWHTLPCQGVSQQHVREDANMPAGAADVFPSLVRQAQWNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGAHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRDFVREALRPRLENASKAESLKSSKNLYMTSAQKDHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRL 392
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 215 bits (547), Expect = 6.470e-61 Identity = 98/121 (80.99%), Postives = 108/121 (89.26%), Query Frame = 1
Query: 1 WGADWGLTGSDADGFTFFTSARGAHVEVCLGPTKLTGVGPITSITFNGHCVRNHAALRRFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSM 363
WGA WG TGSDADGFTFFTSARGAHVEVCLGPT L GVGPI SITFNG CV+NH ALRRFT++ A+DDL LLNVVWHT+PCQGVSQQH+ EDAKMPAGAAD+FPSLVRQAQR LE +P++
Sbjct: 121 WGAHWGFTGSDADGFTFFTSARGAHVEVCLGPTSLKGVGPIASITFNGRCVKNHDALRRFTAVGADDDLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTL 241
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.920e-30 Identity = 87/263 (33.08%), Postives = 139/263 (52.85%), Query Frame = 1
Query: 79 EVCLGPTKLTGVGPITSITFNGHCVRNHAALR---RFTSIRAEDDLPHLLNVVWHTVPCQGVSQQHIMEDAKMPAGAADLFPSLVRQAQRTLEKDPSMPFDGRGRWNSAFVEGLLSAPKGVSGVLGTVGGHSVPGHGRVGGHKVFWSKGCVGFATPFQGQNSVPRCQGCRGLVREAVRPRLESASKAESHEFKNNVFMTSTQKDHKLRTMKADLKRERDAMARLRGRIMSMRKECVRLTVEQGEALHKFMTDAETKDMMQSRL 858
+V + + G G I I+ NG V +H A+ RF I + +DL +L +V +PC G ++QH+ + ++P G+A+ + S+VR A+R L D +P G RW +A V G+L GVSGVLGTVG H+V V WSK C G A+ + RC C+ R+ +PR+ + + E N ++S QK KL + +K + R ++ R+EC+ +QG+A+HKF+ D ET++++ +L
Sbjct: 3 QVVVEKPDIQGRGSIRYISMNGLDVTSHDAISTVGRF--IYSLEDLKQVLRIVDSVLPCLGYARQHMEYERRLPTGSAEAWGSVVRGAERALLGD-HVPVMGE-RWRNAPVRGVLKGSGGVSGVLGTVG-HTVD---------VLWSKDCTGVASDYASGGQ--RCSRCKKFWRDTAKPRITTLT-GEPKPNTANYRLSSGQKTTKLSQLATSMKAANEPAERWHRKVKQYREECIEFPKDQGDAVHKFLIDQETRELLDKKL 248 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig890.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig890.6.1 >prot_P-littoralis_Contig890.6.1 ID=prot_P-littoralis_Contig890.6.1|Name=mRNA_P-littoralis_Contig890.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=286bp WGADWGLTGSDADGFTFFTSARGAHVEVCLGPTKLTGVGPITSITFNGHCback to top mRNA from alignment at P-littoralis_Contig890:3842..5596- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig890.6.1 ID=mRNA_P-littoralis_Contig890.6.1|Name=mRNA_P-littoralis_Contig890.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1755bp|location=Sequence derived from alignment at P-littoralis_Contig890:3842..5596- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig890:3842..5596- >mRNA_P-littoralis_Contig890.6.1 ID=mRNA_P-littoralis_Contig890.6.1|Name=mRNA_P-littoralis_Contig890.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig890:3842..5596- (Pylaiella littoralis U1_48)back to top |