mRNA_P-littoralis_Contig886.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig886.19.1
Unique NamemRNA_P-littoralis_Contig886.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: D7G330_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G330_ECTSI)

HSP 1 Score: 571 bits (1472), Expect = 2.590e-201
Identity = 303/416 (72.84%), Postives = 336/416 (80.77%), Query Frame = 1
Query:    1 MATNAIEVTTNILKIGEDMPVVGGLCTAVLNAKDMVDKASDNQVKLGKLCDRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVAERYGKKGCCTRLAEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLVQQRFGEILARLQPRPKLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVI--EGVRAPEMGEAGESYVKKIVELKKKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPCEQVFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMRTPDNCAPKSSRAWTRSVEEIEAQ 1242
            MAT  IEVTT+ILKIGED+P VGGLCTAVLNAKDMVDKASDNQ KL KLC+RCCGITVQV+EKL+G T L +NVSPLE+C  ELE VAERYGKK CCTRL  F+KDDEDIRDL+KRISTAI DLTAA VVE GNL+QQ+ GEILARLQPRPKLAP PPGVP GQ+WH +R GV D V DILG DGGP VA L GRSGAGKTTAAAAMVG RQG I P A E E+QA TRL RLRARFSDGVVWLRVG+G+G AD LP LM +LA+ + + +    V  P +GE GESYVKKIVE +  +C  VADDVWE  VV+KLRETGMW+LLT R+  +VEP E+VFVDRL + EA+NVLRG A L P   LCD AMKVL +CG VAMDIAFVGSWSS+RT DNCAPKSSRAW   V EI AQ
Sbjct:   12 MATEVIEVTTSILKIGEDIPFVGGLCTAVLNAKDMVDKASDNQAKLEKLCERCCGITVQVVEKLKGPTPLMVNVSPLEDCVKELEEVAERYGKKSCCTRLTHFQKDDEDIRDLEKRISTAIDDLTAAGVVEVGNLMQQQVGEILARLQPRPKLAPVPPGVPMGQSWHTMRDGVVDRVYDILGGDGGPAVAALGGRSGAGKTTAAAAMVGERQGPIHPLARENEEQAGTRLDRLRARFSDGVVWLRVGKGAGVADRLPLLMRKLAKALHEEVLKSYVDGPGIGEDGESYVKKIVEQESLKCRVVADDVWEPPVVEKLRETGMWILLTARNPSMVEPNERVFVDRLEKMEAQNVLRGAARLPPGQSLCDVAMKVLEVCGYVAMDIAFVGSWSSVRTVDNCAPKSSRAWAGVVAEITAQ 427          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 3.260e-120
Identity = 232/419 (55.37%), Postives = 289/419 (68.97%), Query Frame = 1
Query:    1 MATNAIEVTTNILKIGEDMPVVGGLCTAVLNAKDMVDKASDNQVKLGKLCDRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVAERYGKKGCCTRLAEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLVQQRFGEILARLQPRP--KLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRL---RARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVI--EGVRAPEMGEAGESYVKKIVELKKKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPCEQVFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*-ICGGVAMDIAFVGSWSSMRTPDNCAPKSSRAWTRSVEEI 1233
            ++T    V T I++IG   PVV  LC A+L AK +VD AS N+ +LG+LC+RC  ITVQVI+K + + + TI+VSPL+ C ++L+ VA+RY  +GC  RLA+FR+D +DI+ L  RI   +  +  A VV   + ++    +ILARLQPRP  KLAP PPG+P G+AWHAVR  VED V  IL  D  P VA L G+SGAGK+TAAA MV NR+  IR    ETEDQARTR+ RL   RARFSDGVV+LRVG+G G AD LP LM +LA+ + + +  +   APE GE GESYVKK++   KK+CL VADDVWE  VV KL+ETGMWVLLTTR  E+VEP E V VD+L   EAE+VLRG A L    RLCD AM+VL  ICG VAMDIAFVGSWS +R  D+     S AW  +V +I
Sbjct:   97 ISTVVESVATGIIEIGAATPVVAPLCVALLKAKGIVDGASRNKEELGELCERCDLITVQVIDKAKASNTSTIDVSPLQGCVDKLDEVAKRYHDQGCLARLAQFRRDGDDIQRLRARIEAIVPIMGLAGVVNIMDRLED-VRQILARLQPRPRPKLAPVPPGLPAGEAWHAVRDHVEDEVYKILSGDE-PAVAALTGKSGAGKSTAAADMVRNRKVDIRGLDDETEDQARTRMDRLERVRARFSDGVVYLRVGKGEGAADRLPDLMRKLAKALHEDVLKKTAGAPEAGEKGESYVKKMMTRTKKRCLVVADDVWEPPVVAKLKETGMWVLLTTRFPEIVEPNEGVDVDQLTPAEAEDVLRGAAELPRGQRLCDPAMQVLDDICGFVAMDIAFVGSWSMVRHTDD-----SGAWAEAVSKI 508          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 3.230e-107
Identity = 213/403 (52.85%), Postives = 270/403 (67.00%), Query Frame = 1
Query:   37 LKIGEDMPVVGGLCTAVLNAKDMVDKASDNQVKLGKLCDRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVAERYGKKGCCTRLAEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLVQQRFGEILARLQPRPKLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGK-VIEGVRAPEMGEAGESYVKKIVELKKKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPCEQVFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMRTPDNCAPKSSRAWTRSVEEIEAQ 1242
            ++IG   PVV  LCTA+L AK +VD AS N+ +L +L +RC  IT+QVI+K + + + TI+V PL+ C ++L+ VAERY  +G   RLA+FR+D EDI+ L KRI   +  +  + VV  G    ++  +ILARLQP PKLAP P   P  +++H VR GV D VC ILG DGGP +A L G SGAGKTT+AAAMVG R        G+          R+RA F DGVVWL VG  +G AD LP LM  LA+ + + V++G      G+ G SYV+KIV  +K +CL VADDVWEA VV+KLRETGMWVLLTTR  E+ EP E+V +D L   EAE+VLRG A L    RLCD +MKVL ICG VAMD AFVGSW+S+RT  N  PKS++AW R+VEE+ AQ
Sbjct:   31 IEIGASAPVVAPLCTALLKAKGVVDAASRNKEELEELHERCEMITIQVIDKAKASKTSTIDVKPLQECVDKLKEVAERYHDRGRLARLAQFRRDGEDIQRLRKRIEDVVPIMGLSGVVNNG----EKLDQILARLQPGPKLAPVPKKAPFTKSFHVVRDGVVDRVCKILGGDGGPAMAALTGGSGAGKTTSAAAMVGER--------GD----------RVRALFPDGVVWLWVGREAGTADRLPSLMSNLAKRLHEDVMKGAVDAPTGDDGVSYVRKIVSQEKLRCLVVADDVWEASVVQKLRETGMWVLLTTRFPEMGEPEERVVMDTLIPAEAEDVLRGAAELPLGERLCDASMKVLEICGRVAMDTAFVGSWTSVRTT-NGVPKSNKAWERTVEELTAQ 410          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: A0A6H5K0A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A6_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.850e-97
Identity = 221/540 (40.93%), Postives = 251/540 (46.48%), Query Frame = 1
Query:   55 MPVVGGLCTAVLNAKDMVDKASDNQVKLGKLCDRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVA-----------------------------------------------------------------------------------------------------------------------------------------------ERYGKKGCCTRLAEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLVQQRFGEILARLQPRPKLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAA-MVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVIEGVRAPEMGEAGESYVKKIVELKKKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPCEQVFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMRTPDNCAPKSSRAWTRSVEEIEAQ 1242
            MP VGGLCTAVLNA  MVDKAS+NQ KL KLC+ CCGITVQV+EKLQG+ SLTINVSPLE+      GV                                                                                                                                                                      R      ++         V     L Q     + ARL PRPKL   PPGVP GQ+WH +R GV D V  ILG DGGP  A L G+ GAGKTTAAAA MVG RQG I P A E E+QARTRL RLRARFSDGV+WLRVG+G+G +D LP LM +LA+ + + +        G A               CL VA+DVWE  VV+KLRETGMW+LLTTR+  +VEP E+VFVDRL E EA+NVLR  A L P   LCD AMKVL +CG VAMDIAFVGSWSS+ T  N APKSSRAW   V EI AQ
Sbjct:    1 MPFVGGLCTAVLNANVMVDKASNNQAKLEKLCESCCGITVQVVEKLQGSRSLTINVSPLEDFLVFAIGVGFSSLGNDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSWTSSKTSYATSRQDKTVDNHVFLRQTPPVLVQARLPPRPKLVSVPPGVPMGQSWHTMRDGVVDRVYAILGGDGGPAAAALGGQRGAGKTTAAAAAMVGERQGPIHPLAHENEEQARTRLDRLRARFSDGVMWLRVGKGAGASDRLPLLMRKLAKALHEEVLKSHVDAPGVAA--------------CLVVAEDVWELPVVEKLRETGMWILLTTRNPSMVEPNEKVFVDRLEEMEAQNVLRRAARLPPGQSLCDAAMKVLEVCGYVAMDIAFVGSWSSVNTVGNFAPKSSRAWAGVVTEITAQ 526          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: A0A6H5KUE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE6_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.470e-80
Identity = 164/308 (53.25%), Postives = 197/308 (63.96%), Query Frame = 1
Query:  292 TRLAEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLVQQRFGEILARLQPRPKLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVI--EGVRAPEMGEAGESYVKKIVELKKKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPCEQVFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMRTPDNCAPKSSRA 1209
            +RLA FR   ++I+ L   I   +  +  A VV     + ++  ++LARLQPRP+LAP P G+P  Q+W AVR GVED VC ILG    P VA L GRSG GKTT+AAA++  R G I PRAGETED ARTRL R                G GD +  P LM  LA+   + +  + V  P  GE GESYV K V  +  + L VADDV E EVV+KLR+TGMWVLLTTR + +VEP E+V VD+L + EAE+VLRG A L    RLCDDAMKVL ICG  AMDIAFVGSWSS+RT DN AP  SRA
Sbjct:   27 SRLARFRAFGDNIQGLRASIKAVVPIMGLAGVVN----LDEKLEKVLARLQPRPQLAPVPEGIPVRQSWPAVRHGVEDRVCRILGGGRRPAVAALTGRSGTGKTTSAAAVLRER-GPIHPRAGETEDMARTRLDR----------------GEGDENRSPSLMHTLAKARYEDVMEKRVDTPAAGEDGESYVNKFVSRESLRYLVVADDVREVEVVEKLRKTGMWVLLTTRIASMVEPNERVLVDQLTQEEAEDVLRGAAGLPVGYRLCDDAMKVLEICGLRAMDIAFVGSWSSVRTADNGAPIDSRA 313          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 4.550e-61
Identity = 150/430 (34.88%), Postives = 227/430 (52.79%), Query Frame = 1
Query:    1 MATNAIEVTTNILKIGEDMPVVGGLCTAVLNAKDMVDKASDNQVKLGKLCDRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVAERYGKKGCCTRLAEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLVQQ---RFGEILAR--LQPRPKLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVIEGVRAPEMGEA----GESYVKKIVELK-----KKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPCEQ--VFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMRTPDNCAPKSSRAWTRSVEEIEAQ 1242
            M + A ++     ++G ++PVVG +   +   +   +    N  +L  L +RC  +T  VI K + T+S  +NV+PLE+C N  E    R  ++G C R  +   D++++  L+ R+ +   DL  A +      V        E++A+  +     +A  P G P   +WH  R  V D+V + L     P V  L+GRSG+GKTT AA++VG   G  R    ET DQ   RL R+R  F DGVVWLRVG G G A+ +P LM +LA+ V + ++       G +    G +++   V  K     +K+CL VADDVWE +++++LR TGMWVL T+R  +LVE  E   V VD+L + EAE +LRG A LS    L   A +V+  C  +A  + FVG WS+++  D+        W  +V  I+A+
Sbjct:   62 MGSTAADIVMFTEELGGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVDDLKAMLAEVIAQNTMPASVPVAAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQTPQVVGLVGRSGSGKTTCAASIVGESTG--RRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTGGGSAFISDFVRGKGSAAGRKRCLVVADDVWEVDILEELRHTGMWVLFTSRDPDLVERVEGSVVPVDQLSKAEAECLLRGAAELSTGSSLPSAAAQVIERCDRMANRLEFVGRWSTVKGSDD-----EEDWAEAVSAIDAE 484          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 5.860e-61
Identity = 164/430 (38.14%), Postives = 232/430 (53.95%), Query Frame = 1
Query:    1 MATNAIEVTTNILKIGEDMPVVGGLCTAVLNAKDMVDKASDNQVKLGKLCDRCCGITVQVIEKLQ-GTTSLTINVSPLENCFNELEGVAERYGKKGCCTRLAEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLV--------------QQRFG--------EILARLQ------PRP--KLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVIEGV--RAPEMGEAGESYVKKIVEL----KKKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPC--EQVFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMR 1173
            M + A +V   +  +GE++P++  +   +   ++ V+    N   L  L  RC  IT   I K + G T L  +V+PLE+C N +E   ERY K+G  +R+ +   D  DI  L +R+     DL+ A +      +              Q+R G        E+LA+ +      P+P  K+A  P G P  ++WH  R  V ++V   L  DGGP +  L+G SGAGKTTAA+A+V +                    + +R  FSDG+VWL V EG  D  +LP LML+LA+ V + I G   R P   + G +YVK+ VE     K  +CL VAD+VWE++VV +L ETGMW+LL+TR  ELV+    E V VD L E EAE+VLR  A LSP+ RL DDA  ++ +CG VAMD+AFVG WS++R
Sbjct:   19 MGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTEL--DVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSS--------------------IVVRETFSDGIVWLPVNEGVHD--NLPCLMLQLAQMVFEDIGGSVGRRPSGSDDGLAYVKQQVENGHGGKGLKCLVVADNVWESDVVSQLLETGMWILLSTRDEELVKRANGEVVGVDELSEAEAESVLRRAAELSPEARLPDDAKDLIELCGRVAMDLAFVGRWSTVR 424          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.470e-53
Identity = 152/426 (35.68%), Postives = 222/426 (52.11%), Query Frame = 1
Query:    1 MATNAIEVTTNILKIGEDMPV-------VGGLCTAVLNAKDMVDKASDNQVKLGKLCDRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVAERYGKKGCCTRLAEFRKDDEDI-------RDLDKRISTA--------IADLTAAVVVEFGN------LVQQRFGEILARLQPRP-KLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVIEGVRAPEMGEAGESYVKKIVEL----KKKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELV--EPCEQVFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMR 1173
            M +  ++  T + ++GED+P        +  +   +   ++ V+   +NQ +L  L  RC  +T  V+ K + ++   ++++P+E C      + ER G +G  TR+     D E+I       RDL+  +S A         +DLTA V     N      ++      I+ RL   P KLA  P   P  ++WH  R  V + V + L   GGP +  L+G SG+GKTTAA+ +V                    R   +R  FSDGVVWL V  G+   D LP LML+LA  + + + G R P   + G +Y+K+ ++     K  +CL VAD+VWE EVV KL ETGMWVLL+TR  ELV     E V VD + E EAE+VLR  + L P+ RL DDA+ ++ +CG VAMD+AFVG WS++R
Sbjct:   19 MGSATVDSITFMAELGEDLPFGEPVLPHLRPVLKTLTAIRETVENVQNNQEELQTLYRRCVYLTACVVVKSRQSSCSEMDLTPVEECLEAAGELVERCGGRGKMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTAMVERMGTNQAATQEMILANTESIIDRLSKTPAKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAASEIV--------------------RSNEVRQAFSDGVVWLTVNHGA--KDRLPSLMLQLAHMMCEEVGG-RRPATSDDGAAYIKEKMQRGHGGKGLKCLVVADNVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAFVGRWSTVR 421          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 4.360e-50
Identity = 139/392 (35.46%), Postives = 205/392 (52.30%), Query Frame = 1
Query:   43 IGEDMPVVGGLCTAVLNAKDMVDKASDNQVKLGKLCDRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVAERYGKKGCCTRLAEFRKDDEDIRDLDKRISTAIADL-TAAVVVEFGNL--VQQRFGEILARLQPRP----KLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVIEGV--RAPEMGEAGESYVKKIVELKKK----QCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPC--EQVFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMR 1173
            +GE++PV+  +   +   +  V+   +N+ +L  L  RC  IT   + K +   S  ++V+PL++C    +  AER  ++G  +R+ +   D  +I  L+  +     DL  A + V  G +  +++    I  RL+  P    KLA  P G P  ++WH  R     +V D L       V  L G SG+GKTT AA +V                    R   +R  FSDG+VWL V EG+     LP LML+LA  V + I G   R P   E   +Y+K+ +E   K    +CL VAD+VWE +VV KL ETGMWVLL+TR   +V+    + V VD L + +AE+VL+  A L  + RL DDA+ ++ +CG VAMD+AFVG WS++R
Sbjct:   33 LGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRLIES-EVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKKTLDRIDQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIV--------------------RSTEVREAFSDGIVWLPVNEGA--KKRLPSLMLQLARMVHEEIGGSVGRVPSASEDSATYIKQRLEEGHKGRRLKCLVVADNVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAFVGRWSTVR 401          
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 7.710e-46
Identity = 134/374 (35.83%), Postives = 191/374 (51.07%), Query Frame = 1
Query:  145 LCDRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVAERYGKKGCCTRLAEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLVQQ---------------------RFGEILARLQPRPK-LAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGKTTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGSGDADHLPRLMLELAEGVGKVIEGV--RAPEMGEAGESYVKKIVEL----KKKQCL*VADDVWEAEVVKKLRETGMWVLLTTRSSELVEPCEQ---VFVDRLGETEAENVLRGVANLSPDGRLCDDAMKVL*ICGGVAMDIAFVGSWSSMR 1173
            L  RC  IT  VI + +  +S  +  +PL  C N +    ER  ++G  +R+ +   D E+I  L +R+     DL  A +   G  V+                          + AR+   P+ LA  P G P  ++WH  R  V  +VCD L  +GGP +  L+G SG+GKTTAAA +V                    R   +R  FSDG+VWL V +G+   + L  LM+ LA  V + I G   R P   + G +Y ++ ++     K  +CL VAD+VWE  V+ KL ETGMWVLL+TR   LV   E    V VD L E +A +VLR  + LSP+ RL D+A++++ +CG VAMD+AFVG WS++R
Sbjct:   53 LYQRCTYITGCVIVRCRKGSS-GLKATPLMECVNAVGAFVERCSRRGMLSRVLKATDDKEEIAGLKQRLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPETLATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIV--------------------RSTEVREAFSDGIVWLSVNDGA--TERLRALMMHLARVVFEDIGGSVGRRPAGLDDGAAYTRQRMQSGHGGKGLKCLVVADNVWEEAVISKLLETGMWVLLSTRDEALVRSAEGGVVVGVDELSEEDAMSVLRRASELSPELRLPDEAVELVELCGRVAMDVAFVGRWSTVR 403          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig886.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G330_ECTSI2.590e-20172.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE50_9PHAE3.260e-12055.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI2_9PHAE3.230e-10752.85NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K0A6_9PHAE3.850e-9740.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUE6_9PHAE3.470e-8053.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFN6_ECTSI4.550e-6134.88NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KRK8_9PHAE5.860e-6138.14NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZY7_ECTSI1.470e-5335.68NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FZW8_ECTSI4.360e-5035.46NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KLK9_9PHAE7.710e-4635.83NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig886contigP-littoralis_Contig886:51750..53169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFN6
PFAMsCHAT,NB-ARC,TPR_10,TPR_12
Model size1242
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.06e-36
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-24_003000.1
Descriptiondetermination of stomach left/right asymmetry
Cds size900
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791773.7665863-UTR-P-littoralis_Contig886:51749..520911680791773.7665863-UTR-P-littoralis_Contig886:51749..52091Pylaiella littoralis U1_48UTRP-littoralis_Contig886 51750..52091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791773.77978-CDS-P-littoralis_Contig886:52091..525591680791773.77978-CDS-P-littoralis_Contig886:52091..52559Pylaiella littoralis U1_48CDSP-littoralis_Contig886 52092..52559 -
1680791773.7947743-CDS-P-littoralis_Contig886:52737..531691680791773.7947743-CDS-P-littoralis_Contig886:52737..53169Pylaiella littoralis U1_48CDSP-littoralis_Contig886 52738..53169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig886.19.1prot_P-littoralis_Contig886.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig886 52092..53169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig886.19.1

>prot_P-littoralis_Contig886.19.1 ID=prot_P-littoralis_Contig886.19.1|Name=mRNA_P-littoralis_Contig886.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=300bp
MATNAIEVTTNILKIGEDMPVVGGLCTAVLNAKDMVDKASDNQVKLGKLC
DRCCGITVQVIEKLQGTTSLTINVSPLENCFNELEGVAERYGKKGCCTRL
AEFRKDDEDIRDLDKRISTAIADLTAAVVVEFGNLVQQRFGEILARLQPR
PKLAPEPPGVPKGQAWHAVRGGVEDSVCDILGVDGGPVVAVLIGRSGAGK
TTAAAAMVGNRQGSIRPRAGETEDQARTRLLRLRARFSDGVVWLRVGEGS
GDADHLPRLMLELAEGVGKVIEGVRAPEMGEAGESYVKKIVELKKKQCL*
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mRNA from alignment at P-littoralis_Contig886:51750..53169-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig886.19.1 ID=mRNA_P-littoralis_Contig886.19.1|Name=mRNA_P-littoralis_Contig886.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1420bp|location=Sequence derived from alignment at P-littoralis_Contig886:51750..53169- (Pylaiella littoralis U1_48)
ATGGCTACCAACGCGATCGAGGTTACGACAAACATACTGAAGATCGGCGA GGACATGCCAGTGGTGGGAGGTCTCTGCACAGCAGTGTTGAATGCCAAGG ACATGGTAGACAAGGCCAGTGACAACCAAGTCAAACTGGGGAAGCTTTGC GATAGGTGCTGCGGGATCACGGTGCAGGTGATCGAGAAGCTCCAGGGTAC GACGTCCCTGACGATCAACGTTTCTCCGCTCGAAAATTGTTTCAACGAGC TCGAGGGAGTGGCCGAACGCTACGGCAAAAAAGGGTGCTGCACCCGGCTA GCGGAATTCCGAAAAGATGACGAAGACATCCGAGATCTGGACAAACGAAT CAGCACCGCAATTGCCGATCTTACCGCCGCGGTGGTCGTGGAATTCGGGA ATCTCGTGCAACAGCGATTCGGGGAGATTTTGGTGAGATTGTCTACTCCG TCTACATGCGGGTCCATGATCCCTCGGAGCTAGTTTTTGACCTCTGCGCG TTTGTTTCTGTGGTTGACCAGAAGGTCGGAGTCTCTTACGCTGAGTCACG ACAAAACCGTAAAAAATAAATGCTTTTGCTCCATCTCTCACCCCACCCGG TCTTTGAAAGGCTCGTCTGCAGCCGCGACCCAAGCTAGCGCCGGAGCCGC CGGGCGTACCGAAGGGCCAGGCATGGCACGCCGTACGTGGTGGGGTGGAG GACAGCGTGTGTGATATCCTCGGTGTGGATGGAGGCCCAGTCGTTGCGGT ACTCATTGGGCGGAGCGGGGCTGGCAAAACTACCGCCGCCGCCGCGATGG TGGGGAATCGGCAGGGCTCTATCCGCCCTCGCGCCGGTGAGACGGAGGAC CAGGCGCGTACTCGCCTTCTTCGCCTCAGGGCACGCTTTTCCGACGGCGT GGTATGGCTGCGTGTGGGCGAGGGTTCAGGGGACGCAGACCACTTGCCCC GTCTGATGCTGGAGCTGGCCGAGGGGGTCGGCAAGGTGATAGAAGGCGTC CGTGCTCCGGAGATGGGGGAGGCCGGGGAGAGCTACGTGAAGAAGATAGT GGAACTAAAGAAGAAGCAATGCCTTTAGGTGGCCGACGATGTGTGGGAGG CAGAGGTGGTCAAGAAGCTGAGGGAAACGGGCATGTGGGTGCTCCTCACA ACCAGATCTTCCGAGTTGGTCGAACCTTGTGAGCAGGTCTTCGTGGACAG ACTTGGGGAGACGGAGGCGGAGAACGTGCTACGCGGCGTGGCTAATCTGT CACCCGATGGACGCTTATGTGACGATGCCATGAAAGTGCTGTAGATCTGC GGGGGTGTGGCGATGGACATTGCGTTCGTGGGGAGCTGGAGCTCCATGCG TACCCCAGATAACTGCGCACCCAAGAGCAGCAGGGCGTGGACACGTTCCG TGGAAGAAATCGAGGCCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig886:51750..53169-

>mRNA_P-littoralis_Contig886.19.1 ID=mRNA_P-littoralis_Contig886.19.1|Name=mRNA_P-littoralis_Contig886.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=900bp|location=Sequence derived from alignment at P-littoralis_Contig886:51750..53169- (Pylaiella littoralis U1_48)
ATGGCTACCAACGCGATCGAGGTTACGACAAACATACTGAAGATCGGCGA
GGACATGCCAGTGGTGGGAGGTCTCTGCACAGCAGTGTTGAATGCCAAGG
ACATGGTAGACAAGGCCAGTGACAACCAAGTCAAACTGGGGAAGCTTTGC
GATAGGTGCTGCGGGATCACGGTGCAGGTGATCGAGAAGCTCCAGGGTAC
GACGTCCCTGACGATCAACGTTTCTCCGCTCGAAAATTGTTTCAACGAGC
TCGAGGGAGTGGCCGAACGCTACGGCAAAAAAGGGTGCTGCACCCGGCTA
GCGGAATTCCGAAAAGATGACGAAGACATCCGAGATCTGGACAAACGAAT
CAGCACCGCAATTGCCGATCTTACCGCCGCGGTGGTCGTGGAATTCGGGA
ATCTCGTGCAACAGCGATTCGGGGAGATTTTGGCTCGTCTGCAGCCGCGA
CCCAAGCTAGCGCCGGAGCCGCCGGGCGTACCGAAGGGCCAGGCATGGCA
CGCCGTACGTGGTGGGGTGGAGGACAGCGTGTGTGATATCCTCGGTGTGG
ATGGAGGCCCAGTCGTTGCGGTACTCATTGGGCGGAGCGGGGCTGGCAAA
ACTACCGCCGCCGCCGCGATGGTGGGGAATCGGCAGGGCTCTATCCGCCC
TCGCGCCGGTGAGACGGAGGACCAGGCGCGTACTCGCCTTCTTCGCCTCA
GGGCACGCTTTTCCGACGGCGTGGTATGGCTGCGTGTGGGCGAGGGTTCA
GGGGACGCAGACCACTTGCCCCGTCTGATGCTGGAGCTGGCCGAGGGGGT
CGGCAAGGTGATAGAAGGCGTCCGTGCTCCGGAGATGGGGGAGGCCGGGG
AGAGCTACGTGAAGAAGATAGTGGAACTAAAGAAGAAGCAATGCCTTTAG
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