mRNA_P-littoralis_Contig886.3.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 172 bits (435), Expect = 1.270e-51 Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 1
Query: 1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDVR----------ASSGSFARVYLEKT-GQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
RR DRYCTSPA ++AL+ VSI G VLDMCGG DAVA+RL +TC V+TNDV ASS SF +L GQQPDW+VTSPPYKGA+ FV AAL VA+ GVALKLPLSF+EPCADRA WLQ N P++C+ + R+
Sbjct: 65 RRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRA 207
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 167 bits (424), Expect = 4.770e-50 Identity = 86/145 (59.31%), Postives = 101/145 (69.66%), Query Frame = 1
Query: 1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDVR---------------ASSGSFARVYL-EKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFL 387
RR DRYCTSP AV+AL+ V +EG VLDMCGG DA+A RLG TC VVTND+ AS SFA +L K GQ+PDWV+TSPPYKGA+++V +AL +A GVALKLPLSF+EPCADR WLQ N P+VCVF
Sbjct: 77 RRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 157 bits (398), Expect = 3.760e-45 Identity = 84/143 (58.74%), Postives = 96/143 (67.13%), Query Frame = 1
Query: 1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDV--RASSGSFARVYL---------EKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
RR DRYCT P AV+ L V+I G VLDMCGG DAVA TC V+TNDV R S+G+ L G+QPDWVVTSPPYKGA+ FV AAL VA GVALKLPLSF+EPCADR WL +N P+VC+FLRR+
Sbjct: 123 RRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRA 265
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 154 bits (390), Expect = 5.130e-44 Identity = 84/149 (56.38%), Postives = 101/149 (67.79%), Query Frame = 1
Query: 1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDVR----------------ASSGSFARVYL-EKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
RR DRYCTS AV+AL+ V++ G VLDMCGG DAVA +L +TC VVTNDV AS +FA +L + QQP+ VV SPPYKGA+KFV AAL VA++GVALK LSF+EPC DRA WL+ N P+VCVFLRR+
Sbjct: 113 RRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRA 261
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.350e-33 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 88 MCGGRTDAVAVRLGETCTVVTNDVRASSGSFARVYLEKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
MCGG DAVA+ G TC V+TNDV + R+ G+QPDWVVTSPPYKGA+ FV A L VA GVAL+LPLSF +PCADR +WL +N P +C FLRR+
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSS------RLSPAHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRA 97
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 122 bits (306), Expect = 4.330e-33 Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 88 MCGGRTDAVAVRLGETCTVVTNDV----------RASSGSFARVYLEK-TGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
MCGG TDAVA RL TC ++TNDV AS F +L +G++P+WVVTSPPY A+ FV AA+ +A GVA K+P+ F+EPCADR WLQ N PSVCVFLRR+
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRA 114
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.150e-29 Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 163 ASSGSFARVYLEK-TGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
ASS S+A YL GQQPDWVV SPPYKGA+ FV AAL VA+ GVALKLPLSF+EPCADRA WLQEN PS+C+ + R+
Sbjct: 18 ASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRA 96
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.590e-29 Identity = 65/111 (58.56%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDVRASSGSFARVYL-EKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEP 330
RR DRYCTSPAAVDAL A V+I G VLDMCGG DAVA G TCT ++ AS F ++ + G++PDWVVTSPPYKG++ FV AAL VA GVALKL L P
Sbjct: 42 RRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTCT----NLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE) HSP 1 Score: 110 bits (276), Expect = 9.560e-29 Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 163 ASSGSFARVYLEK-TGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
ASS SFA YL GQQPDWVV+SPPY+GA+ FV AAL VA+ GVALKLPLSF+EPCADRA WLQ N P++C+ + R+
Sbjct: 19 ASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRA 97
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE) HSP 1 Score: 102 bits (254), Expect = 5.990e-25 Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 163 ASSGSFARVYLEKTG-QQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
ASS SF +L QQPDWVVT PPY GA+ FV AAL VA+ GVALKLPLSF+EPCADRA WLQ N P++C+ + R+
Sbjct: 59 ASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRA 137 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig886.3.1 >prot_P-littoralis_Contig886.3.1 ID=prot_P-littoralis_Contig886.3.1|Name=mRNA_P-littoralis_Contig886.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTback to top mRNA from alignment at P-littoralis_Contig886:9313..9926+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig886.3.1 ID=mRNA_P-littoralis_Contig886.3.1|Name=mRNA_P-littoralis_Contig886.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=614bp|location=Sequence derived from alignment at P-littoralis_Contig886:9313..9926+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig886:9313..9926+ >mRNA_P-littoralis_Contig886.3.1 ID=mRNA_P-littoralis_Contig886.3.1|Name=mRNA_P-littoralis_Contig886.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig886:9313..9926+ (Pylaiella littoralis U1_48)back to top |