mRNA_P-littoralis_Contig886.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig886.3.1
Unique NamemRNA_P-littoralis_Contig886.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.270e-51
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDVR----------ASSGSFARVYLEKT-GQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
            RR  DRYCTSPA ++AL+  VSI G VLDMCGG  DAVA+RL +TC V+TNDV           ASS SF   +L    GQQPDW+VTSPPYKGA+ FV AAL VA+ GVALKLPLSF+EPCADRA WLQ N P++C+ + R+
Sbjct:   65 RRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRA 207          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 4.770e-50
Identity = 86/145 (59.31%), Postives = 101/145 (69.66%), Query Frame = 1
Query:    1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDVR---------------ASSGSFARVYL-EKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFL 387
            RR  DRYCTSP AV+AL+  V +EG VLDMCGG  DA+A RLG TC VVTND+                AS  SFA  +L  K GQ+PDWV+TSPPYKGA+++V +AL +A  GVALKLPLSF+EPCADR  WLQ N P+VCVF 
Sbjct:   77 RRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 3.760e-45
Identity = 84/143 (58.74%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDV--RASSGSFARVYL---------EKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
            RR  DRYCT P AV+ L   V+I G VLDMCGG  DAVA     TC V+TNDV  R S+G+     L            G+QPDWVVTSPPYKGA+ FV AAL VA  GVALKLPLSF+EPCADR  WL +N P+VC+FLRR+
Sbjct:  123 RRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRA 265          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.130e-44
Identity = 84/149 (56.38%), Postives = 101/149 (67.79%), Query Frame = 1
Query:    1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDVR----------------ASSGSFARVYL-EKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
            RR  DRYCTS  AV+AL+  V++ G VLDMCGG  DAVA +L +TC VVTNDV                 AS  +FA  +L +   QQP+ VV SPPYKGA+KFV AAL VA++GVALK  LSF+EPC DRA WL+ N P+VCVFLRR+
Sbjct:  113 RRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRA 261          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.350e-33
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   88 MCGGRTDAVAVRLGETCTVVTNDVRASSGSFARVYLEKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
            MCGG  DAVA+  G TC V+TNDV +      R+     G+QPDWVVTSPPYKGA+ FV A L VA  GVAL+LPLSF +PCADR +WL +N P +C FLRR+
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVSS------RLSPAHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRA 97          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 4.330e-33
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   88 MCGGRTDAVAVRLGETCTVVTNDV----------RASSGSFARVYLEK-TGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
            MCGG TDAVA RL  TC ++TNDV           AS   F   +L   +G++P+WVVTSPPY  A+ FV AA+ +A  GVA K+P+ F+EPCADR  WLQ N PSVCVFLRR+
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRA 114          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.150e-29
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  163 ASSGSFARVYLEK-TGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
            ASS S+A  YL    GQQPDWVV SPPYKGA+ FV AAL VA+ GVALKLPLSF+EPCADRA WLQEN PS+C+ + R+
Sbjct:   18 ASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRA 96          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.590e-29
Identity = 65/111 (58.56%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVTNDVRASSGSFARVYL-EKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEP 330
            RR  DRYCTSPAAVDAL A V+I G VLDMCGG  DAVA   G TCT    ++ AS   F   ++ +  G++PDWVVTSPPYKG++ FV AAL VA  GVALKL L    P
Sbjct:   42 RRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTCT----NLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 9.560e-29
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  163 ASSGSFARVYLEK-TGQQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
            ASS SFA  YL    GQQPDWVV+SPPY+GA+ FV AAL VA+ GVALKLPLSF+EPCADRA WLQ N P++C+ + R+
Sbjct:   19 ASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRA 97          
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.990e-25
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  163 ASSGSFARVYLEKTG-QQPDWVVTSPPYKGAIKFVMAALEVARYGVALKLPLSFMEPCADRATWLQENSPSVCVFLRRS 396
            ASS SF   +L     QQPDWVVT PPY GA+ FV AAL VA+ GVALKLPLSF+EPCADRA WLQ N P++C+ + R+
Sbjct:   59 ASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRA 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig886.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K049_9PHAE1.270e-5161.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI4.770e-5059.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUK3_9PHAE3.760e-4558.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE5.130e-4456.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K929_9PHAE1.350e-3359.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI4.330e-3354.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAM1_9PHAE1.150e-2969.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1N5_9PHAE1.590e-2958.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE9.560e-2967.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSV3_9PHAE5.990e-2563.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig886contigP-littoralis_Contig886:9313..9926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog102129.Lepto7375DRAFT_7442
PFAMsAcyltransferase,MMPL,Methyltransf_21,Methyltransf_25,Methyltransf_31
Model size396
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.85e-10
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1GAGN@1117|Cyanobacteria,1HHWT@1150|Oscillatoriales
DescriptionSpecifically methylates the guanine in position
Cds size396
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791773.5866454-CDS-P-littoralis_Contig886:9312..94791680791773.5866454-CDS-P-littoralis_Contig886:9312..9479Pylaiella littoralis U1_48CDSP-littoralis_Contig886 9313..9479 +
1680791773.6159866-CDS-P-littoralis_Contig886:9697..99261680791773.6159866-CDS-P-littoralis_Contig886:9697..9926Pylaiella littoralis U1_48CDSP-littoralis_Contig886 9698..9926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig886.3.1prot_P-littoralis_Contig886.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig886 9313..9926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig886.3.1

>prot_P-littoralis_Contig886.3.1 ID=prot_P-littoralis_Contig886.3.1|Name=mRNA_P-littoralis_Contig886.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
RRPYDRYCTSPAAVDALVAEVSIEGLVLDMCGGRTDAVAVRLGETCTVVT
NDVRASSGSFARVYLEKTGQQPDWVVTSPPYKGAIKFVMAALEVARYGVA
LKLPLSFMEPCADRATWLQENSPSVCVFLRRS
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mRNA from alignment at P-littoralis_Contig886:9313..9926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig886.3.1 ID=mRNA_P-littoralis_Contig886.3.1|Name=mRNA_P-littoralis_Contig886.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=614bp|location=Sequence derived from alignment at P-littoralis_Contig886:9313..9926+ (Pylaiella littoralis U1_48)
CGCAGGCCTTACGATCGCTACTGCACGTCGCCCGCGGCGGTAGACGCTTT GGTGGCCGAGGTTAGCATTGAAGGGCTGGTGCTGGACATGTGCGGGGGGC GGACGGACGCTGTGGCCGTTCGCCTCGGGGAGACCTGTACTGTCGTCACG AATGACGTGAGGGCCAGGTGAGACAAAAAAAAGATTGCAGGTTGGATATT ACTTACCTAAAAATTCCCCTGTCGACATAACGAACTCAGTTGCCAATAGA GTCGAGCGCGGCGGTGTTTTCTCGTGGCTCTATCTTGAATTGGTGTTGCC AGCAAAACGCCAGGGCCAACAGTTGTTTGTTGCGTTGTGTGTCAATATAT GCCAGCAGGTGTGCGGACACCAGCCTGGATGCAAGCAGCGGCAGCTTTGC CCGAGTGTACCTTGAGAAGACCGGCCAACAACCCGATTGGGTCGTAACAA GCCCTCCTTACAAGGGTGCCATCAAGTTTGTGATGGCGGCTTTGGAGGTA GCTCGTTACGGCGTTGCCCTGAAGTTGCCTCTCTCTTTCATGGAACCATG CGCAGACCGGGCCACATGGCTGCAAGAAAATTCTCCATCGGTCTGTGTAT TCTTGAGGAGGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig886:9313..9926+

>mRNA_P-littoralis_Contig886.3.1 ID=mRNA_P-littoralis_Contig886.3.1|Name=mRNA_P-littoralis_Contig886.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig886:9313..9926+ (Pylaiella littoralis U1_48)
CGCAGGCCTTACGATCGCTACTGCACGTCGCCCGCGGCGGTAGACGCTTT
GGTGGCCGAGGTTAGCATTGAAGGGCTGGTGCTGGACATGTGCGGGGGGC
GGACGGACGCTGTGGCCGTTCGCCTCGGGGAGACCTGTACTGTCGTCACG
AATGACGTGAGGGCCAGCAGCGGCAGCTTTGCCCGAGTGTACCTTGAGAA
GACCGGCCAACAACCCGATTGGGTCGTAACAAGCCCTCCTTACAAGGGTG
CCATCAAGTTTGTGATGGCGGCTTTGGAGGTAGCTCGTTACGGCGTTGCC
CTGAAGTTGCCTCTCTCTTTCATGGAACCATGCGCAGACCGGGCCACATG
GCTGCAAGAAAATTCTCCATCGGTCTGTGTATTCTTGAGGAGGTCA
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