mRNA_P-littoralis_Contig885.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 204 bits (519), Expect = 2.960e-63 Identity = 100/142 (70.42%), Postives = 115/142 (80.99%), Query Frame = 2
Query: 206 LDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSP-----DTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
LDRYCTSP+AV ALLGAV + GCVLDMCGGPGDA+ATRL C+V+TND+++R SP DTNLD + SF+ DFL A G++PDWV+TSPPYK AL VK+ LS+A KGVALKL LSFLEPC DRGGWLQANPPAVCVF
Sbjct: 80 LDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 202 bits (514), Expect = 2.110e-62 Identity = 97/137 (70.80%), Postives = 110/137 (80.29%), Query Frame = 2
Query: 206 LDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
+DRYCTSP + ALLG VSI+GCVLDMCGG DAVA RLR C+V+TNDV R SP TNLD +S SF+DDFL A G+QPDW+VTSPPYK AL VKA L+VA KGVALKL LSFLEPC DR GWLQANPPA+C+ +
Sbjct: 68 VDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMM 204
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 194 bits (492), Expect = 1.940e-59 Identity = 92/137 (67.15%), Postives = 107/137 (78.10%), Query Frame = 2
Query: 206 LDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
LDRYCTSP+A+ A LGAV ITGCVLDMCGGP DAVATRLR CE++TNDV+S DTNLD + SF +DFL A GK+P+WV TSPPY ALT VKA +S+A KGV K+ + FLEPC D GGWLQ NPP++CVFL
Sbjct: 27 LDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFL 163
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 196 bits (499), Expect = 3.600e-59 Identity = 97/139 (69.78%), Postives = 108/139 (77.70%), Query Frame = 2
Query: 200 KHLDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
+ LDRYCT P+AV L AV+I GCVLDMCGGP DAVA R CEV+TNDV+SR S TNLD + +SF D+F KA GKQPDWVVTSPPYK A+ VKA L+VA KGVALKL LSFLEPC DRGGWL NPPAVC+FL
Sbjct: 124 RRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFL 262
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 173 bits (439), Expect = 3.240e-50 Identity = 90/145 (62.07%), Postives = 106/145 (73.10%), Query Frame = 2
Query: 200 KHLDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFS------PDTNLDVTSVSFSDDFLK-ALGKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
+HLDRYCTS AV ALL AV+++G VLDMCGGP DAVA +LR CEV+TNDV+SR S PDT+LD + +F+ +FL +QP+ VV SPPYK A+ VKA L VA GVALK SLSFLEPC DR WL+ANPP VCVFL
Sbjct: 114 RHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFL 258
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 154 bits (390), Expect = 1.070e-44 Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 2
Query: 284 MCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
MCGGP DAVATRLR CE++TNDV+S DTNL+ + F +DFL A GK+P+WVVTSPPY ALT VKA +S+A KGVA K+ + FLEPC DRGGWLQ NPP+VCVFL
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFL 111
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.150e-40 Identity = 75/109 (68.81%), Postives = 87/109 (79.82%), Query Frame = 2
Query: 206 LDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVAL 529
LDRYCTSP+AV ALLGAVSITGC+LD+CGGP DAVATRL CEV+TNDV+S DTNLD + SF DDF A GK+PDWVVTSP YK+ALT VKA +S+A +GV +
Sbjct: 93 LDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTV 201
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: D7G7B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B0_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.150e-35 Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query: 284 MCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWL 580
MCGGP DAVATRLR CE++TNDV+S DTNLD + F ++FL A GK+P+WVV SPPY ALT VKA +S+A KGVA K+ + FLEPC DRGGWL
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLELFPENFLAAYSGKRPEWVVISPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWL 100
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.420e-33 Identity = 77/138 (55.80%), Postives = 86/138 (62.32%), Query Frame = 2
Query: 146 ATAGCGALPRNL*GI*NAKHLDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEP 556
ATAG GA NL + LDRYCTSP AV AL AV+ITGCVLDMCGGP DAVA G C TNLD + V F D+F+K GK+PDWVVTSPPYK ++ V A L+VA KGVALKLSL P
Sbjct: 26 ATAGPGAPLLNLSRT-TRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTC--------------TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.820e-33 Identity = 64/110 (58.18%), Postives = 71/110 (64.55%), Query Frame = 2
Query: 284 MCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKALGKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
MCGGP DAVA G CEV+TNDV+SR SP GKQPDWVVTSPPYK A+ VKA L+VA KGVAL+L LSF +PC DRG WL NPP +C FL
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSPAHP----------------GKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFL 94 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig885.3.1 >prot_P-littoralis_Contig885.3.1 ID=prot_P-littoralis_Contig885.3.1|Name=mRNA_P-littoralis_Contig885.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp MCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKALGback to top mRNA from alignment at P-littoralis_Contig885:19364..20930+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig885.3.1 ID=mRNA_P-littoralis_Contig885.3.1|Name=mRNA_P-littoralis_Contig885.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1567bp|location=Sequence derived from alignment at P-littoralis_Contig885:19364..20930+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig885:19364..20930+ >mRNA_P-littoralis_Contig885.3.1 ID=mRNA_P-littoralis_Contig885.3.1|Name=mRNA_P-littoralis_Contig885.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig885:19364..20930+ (Pylaiella littoralis U1_48)back to top |