mRNA_P-littoralis_Contig885.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig885.3.1
Unique NamemRNA_P-littoralis_Contig885.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.960e-63
Identity = 100/142 (70.42%), Postives = 115/142 (80.99%), Query Frame = 2
Query:  206 LDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSP-----DTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
            LDRYCTSP+AV ALLGAV + GCVLDMCGGPGDA+ATRL   C+V+TND+++R SP     DTNLD +  SF+ DFL A  G++PDWV+TSPPYK AL  VK+ LS+A KGVALKL LSFLEPC DRGGWLQANPPAVCVF 
Sbjct:   80 LDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.110e-62
Identity = 97/137 (70.80%), Postives = 110/137 (80.29%), Query Frame = 2
Query:  206 LDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
            +DRYCTSP  + ALLG VSI+GCVLDMCGG  DAVA RLR  C+V+TNDV  R SP TNLD +S SF+DDFL A  G+QPDW+VTSPPYK AL  VKA L+VA KGVALKL LSFLEPC DR GWLQANPPA+C+ +
Sbjct:   68 VDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMM 204          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.940e-59
Identity = 92/137 (67.15%), Postives = 107/137 (78.10%), Query Frame = 2
Query:  206 LDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
            LDRYCTSP+A+ A LGAV ITGCVLDMCGGP DAVATRLR  CE++TNDV+S    DTNLD +  SF +DFL A  GK+P+WV TSPPY  ALT VKA +S+A KGV  K+ + FLEPC D GGWLQ NPP++CVFL
Sbjct:   27 LDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFL 163          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 3.600e-59
Identity = 97/139 (69.78%), Postives = 108/139 (77.70%), Query Frame = 2
Query:  200 KHLDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
            + LDRYCT P+AV  L  AV+I GCVLDMCGGP DAVA   R  CEV+TNDV+SR S  TNLD + +SF D+F KA  GKQPDWVVTSPPYK A+  VKA L+VA KGVALKL LSFLEPC DRGGWL  NPPAVC+FL
Sbjct:  124 RRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFL 262          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.240e-50
Identity = 90/145 (62.07%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  200 KHLDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFS------PDTNLDVTSVSFSDDFLK-ALGKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
            +HLDRYCTS  AV ALL AV+++G VLDMCGGP DAVA +LR  CEV+TNDV+SR S      PDT+LD +  +F+ +FL     +QP+ VV SPPYK A+  VKA L VA  GVALK SLSFLEPC DR  WL+ANPP VCVFL
Sbjct:  114 RHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFL 258          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.070e-44
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 2
Query:  284 MCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
            MCGGP DAVATRLR  CE++TNDV+S    DTNL+ +   F +DFL A  GK+P+WVVTSPPY  ALT VKA +S+A KGVA K+ + FLEPC DRGGWLQ NPP+VCVFL
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFL 111          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.150e-40
Identity = 75/109 (68.81%), Postives = 87/109 (79.82%), Query Frame = 2
Query:  206 LDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVAL 529
            LDRYCTSP+AV ALLGAVSITGC+LD+CGGP DAVATRL   CEV+TNDV+S    DTNLD +  SF DDF  A  GK+PDWVVTSP YK+ALT VKA +S+A +GV +
Sbjct:   93 LDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTV 201          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: D7G7B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.150e-35
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  284 MCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWL 580
            MCGGP DAVATRLR  CE++TNDV+S    DTNLD +   F ++FL A  GK+P+WVV SPPY  ALT VKA +S+A KGVA K+ + FLEPC DRGGWL
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLELFPENFLAAYSGKRPEWVVISPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWL 100          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.420e-33
Identity = 77/138 (55.80%), Postives = 86/138 (62.32%), Query Frame = 2
Query:  146 ATAGCGALPRNL*GI*NAKHLDRYCTSPKAVGALLGAVSITGCVLDMCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEP 556
            ATAG GA   NL      + LDRYCTSP AV AL  AV+ITGCVLDMCGGP DAVA    G C              TNLD + V F D+F+K   GK+PDWVVTSPPYK ++  V A L+VA KGVALKLSL    P
Sbjct:   26 ATAGPGAPLLNLSRT-TRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTC--------------TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148          
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.820e-33
Identity = 64/110 (58.18%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  284 MCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKALGKQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQANPPAVCVFL 613
            MCGGP DAVA    G CEV+TNDV+SR SP                   GKQPDWVVTSPPYK A+  VKA L+VA KGVAL+L LSF +PC DRG WL  NPP +C FL
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSPAHP----------------GKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFL 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig885.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJU4_ECTSI2.960e-6370.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K049_9PHAE2.110e-6270.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G0Y0_ECTSI1.940e-5967.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUK3_9PHAE3.600e-5969.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE3.240e-5062.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI1.070e-4465.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD58_9PHAE1.150e-4068.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7B0_ECTSI1.150e-3563.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1N5_9PHAE1.420e-3355.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K929_9PHAE2.820e-3358.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig885contigP-littoralis_Contig885:19364..20930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1041138.KB890222_gene740
Model size613
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.75e-05
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1QYWA@1224|Proteobacteria,2TY0H@28211|Alphaproteobacteria
DescriptionSpecifically methylates the guanine in position
Cds size330
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.8310306-UTR-P-littoralis_Contig885:19363..196461680791772.8310306-UTR-P-littoralis_Contig885:19363..19646Pylaiella littoralis U1_48UTRP-littoralis_Contig885 19364..19646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.8509593-CDS-P-littoralis_Contig885:19646..197261680791772.8509593-CDS-P-littoralis_Contig885:19646..19726Pylaiella littoralis U1_48CDSP-littoralis_Contig885 19647..19726 +
1680791772.864178-CDS-P-littoralis_Contig885:20680..209301680791772.864178-CDS-P-littoralis_Contig885:20680..20930Pylaiella littoralis U1_48CDSP-littoralis_Contig885 20681..20930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig885.3.1prot_P-littoralis_Contig885.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig885 19647..20930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig885.3.1

>prot_P-littoralis_Contig885.3.1 ID=prot_P-littoralis_Contig885.3.1|Name=mRNA_P-littoralis_Contig885.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MCGGPGDAVATRLRGACEVITNDVNSRFSPDTNLDVTSVSFSDDFLKALG
KQPDWVVTSPPYKNALTCVKATLSVANKGVALKLSLSFLEPCHDRGGWLQ
ANPPAVCVFL
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mRNA from alignment at P-littoralis_Contig885:19364..20930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig885.3.1 ID=mRNA_P-littoralis_Contig885.3.1|Name=mRNA_P-littoralis_Contig885.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1567bp|location=Sequence derived from alignment at P-littoralis_Contig885:19364..20930+ (Pylaiella littoralis U1_48)
AGGTTTCCACGCTTGCAGTCGAAGGACCTATCCACAAACATGCTGGCACT GTGTAAACGCGAGGACTGTTTGTTGCCACTGTACAAGAAGCACGAGCAGG AGGAGAGCAAGGAGCGAGTAAGACGCAAAACGAAGCGGAAGCCACGCCAC AGCAGGGTGTGGAGCGCTGCCCCGGAACCTGTGAGGCATTTGAAACGCCA AGCATCTTGACCGCTACTGTACTTCACCTAAGGCGGTGGGCGCTTTGCTG GGTGCTGTTTCTATTACAGGGTGTGTATTAGACATGTGCGGCGGGCCTGG AGACGCCGTGGCGACGCGGCTTCGAGGGGCGTGCGAAGTCATAACGAACG ACGTGAACTCACGGTAAGGCTACATCTTATGTGACGAGAACAGCAATACT TTTTGGGGGCCTTTTGGATAACGTTTCGGACAGGACGTTTTGGAGCGCTC GACCTTATACGTCAAAGCTTAACAGCAGGTGGTTCAGAAAACAAATTCCG AAAAAATAAAAGTCTCTCCTGTTCCTTTGAGGCGGTTTGATGGTTGACAA ATTGACAAAATTGACATTGCACTGCTGTAACCGGTTCGCTCTTCTGGTCA CCACTCTCGAACGAATAAAGCCACAGCAATGCTAAAGCCATGCCTCGCGA GCTGTGTACATGGTCCTTCTTCTGCGGTGGGCATCTGAGGCCGCGAGGTG TCGATAGGCTAGCGAAATATTTTGCAGGCATCATCGACGACGTGTGAAGA AGAGAAAAAATATCAAAACAGCTCCCAGTAGGTGGTGTTGATTTCTTCTT TTTCCCACACGTCGTCGATTCATGCAATCCTTCTTTACTAGCCTATCGAT GCCTCGCTGCTTCAGATTACCACCGCAGGAGAAAGACCTTGTACACAGCT CGCGAGGCATGGCTTTACCATTGCTGTGGCTTCTTTCGTTCGAGAGTGAT GAACGAAATTTAGACAAGCGTGAAAGTGTTTACTTGCCCCACCAAATAAT ATAGCACTATAATGACGAAGGAGGACAAAAAAAAGTGGACGAGTGTTTTT ATGGAGTGCTGAATATCAGTGTCGTCCTACACTTATTTGGCAACATGTGA TGAGACGTTTGTCGCCTCCTCAGAACTCTTTGCCGCAAGGTTGTCTTTCG GTTGCAATGACTCGTATCCCCCCCCTGTTTGATACTTTGGCAGGAGGGTA AAGGATATTACATCCTCTAAGGTTCCTCGACAACCGCGCATGCAGAAATT CCGTTCTTTTGTGATGCTGTCGTACTTGTCTGTGACTGTTCGTTTCGCTG TTTTCCCTACATGCTAGATTTTCACCGGATACGAACCTGGACGTGACCTC GGTGTCATTTTCGGACGACTTTCTGAAAGCTCTCGGAAAACAACCTGACT GGGTGGTGACGAGCCCTCCGTACAAGAATGCTCTCACATGTGTCAAGGCC ACCTTGTCGGTGGCGAACAAAGGCGTGGCGCTCAAACTGTCTTTGTCTTT TCTGGAACCTTGCCACGACCGTGGAGGCTGGCTTCAAGCGAACCCCCCAG CTGTGTGTGTGTTTCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig885:19364..20930+

>mRNA_P-littoralis_Contig885.3.1 ID=mRNA_P-littoralis_Contig885.3.1|Name=mRNA_P-littoralis_Contig885.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig885:19364..20930+ (Pylaiella littoralis U1_48)
ATGTGCGGCGGGCCTGGAGACGCCGTGGCGACGCGGCTTCGAGGGGCGTG
CGAAGTCATAACGAACGACGTGAACTCACGATTTTCACCGGATACGAACC
TGGACGTGACCTCGGTGTCATTTTCGGACGACTTTCTGAAAGCTCTCGGA
AAACAACCTGACTGGGTGGTGACGAGCCCTCCGTACAAGAATGCTCTCAC
ATGTGTCAAGGCCACCTTGTCGGTGGCGAACAAAGGCGTGGCGCTCAAAC
TGTCTTTGTCTTTTCTGGAACCTTGCCACGACCGTGGAGGCTGGCTTCAA
GCGAACCCCCCAGCTGTGTGTGTGTTTCTA
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