mRNA_P-littoralis_Contig878.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig878.2.1
Unique NamemRNA_P-littoralis_Contig878.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: A0A6H5KZH8_9PHAE (GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZH8_9PHAE)

HSP 1 Score: 421 bits (1082), Expect = 2.040e-147
Identity = 199/249 (79.92%), Postives = 219/249 (87.95%), Query Frame = 1
Query:   43 MVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQTKRKALQDAADEVVEVEPIAIPVQKDAGHVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQMKVG 789
            MVT+DDFVIGAEVLLHSLREHC               LVVMVT+GVSQ KR+AL+  +DEV+EVEPIA+P+++ AGHVP+W  VGYTKLRVWGL Q++RVVY+DADALVM D+DELFDREVDFAAAPDVFPPD FNAGVMVV PSL+VLEDM+SKVEELPSYDGGDTGFLNAYF DWFSRPAAARLPFAYNALRTVYWTTH+KNPGYWEAIGPVKIIHFCSSPKPWEE  RKGDLEM WWQR +QMK+G
Sbjct:    1 MVTSDDFVIGAEVLLHSLREHC-------GGSTRRPALVVMVTSGVSQLKRQALKVVSDEVIEVEPIAVPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMVDIDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRCVQMKMG 242          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: A0A7S2Y0F1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F1_9STRA)

HSP 1 Score: 298 bits (763), Expect = 7.450e-99
Identity = 144/252 (57.14%), Postives = 178/252 (70.63%), Query Frame = 1
Query:   31 AFVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQTKRKALQDAADEVVEVEPIAIPVQKDAGHVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQMKV 786
            AFVT++TND F +G EVLL SL +                 +V++VT  VSQ  R  L  +   + ++EPI  P  +   HV  W   GY KLR+WGL +Y RVVY+DAD LVME + ELF+RE DFAAAPDVFPPD FNAGV+V+ P   V EDMLSK+  LPSYDGGDTGFLNAYFPDWFS PAA+RLPFA+NA RT++W T  +NPGYW+A GP KIIH+ S+PKPW+   +KG+LEMIWWQ YL+ ++
Sbjct:    2 AFVTILTNDSFKMGVEVLLFSLEQTSMQDNVD---------VVILVTPQVSQFTRNQLVRSNRRIKQIEPIENPNAE--AHVQGWVDSGYAKLRLWGLLEYSRVVYLDADCLVMEPIHELFEREADFAAAPDVFPPDKFNAGVLVLKPDQAVYEDMLSKLNALPSYDGGDTGFLNAYFPDWFSCPAASRLPFAFNAQRTLHWLTAARNPGYWQAAGPHKIIHYSSNPKPWDSGAKKGELEMIWWQYYLRSRM 242          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: A0A835YMF4_9STRA (Glycosyltransferase, family GT8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMF4_9STRA)

HSP 1 Score: 295 bits (756), Expect = 1.380e-97
Identity = 140/261 (53.64%), Postives = 185/261 (70.88%), Query Frame = 1
Query:   19 SDHEAFVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQTKRKALQDAADEVVEVEPIAIPVQKDAG-HVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYW-EAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQMKVGSM 795
            S+  A+ T+VT D++ IGAEVLL SL+E   +              VV++T  VS + R  LQ    EV+EV P+++     A  HV  W +VGYTKLR+WGL QY ++ Y+DAD LV+  ++++F R+VDFAAAPDVFPPD FNAGV++V P+  + +DM+ K+ ELPSYDGGDTGFLNAYFP+WF+  A ARLPF YNA RT+YW TH+K P YW EA+ P+KIIHFCSSPKPWE  K+KGDLEM+WW +++  +   +
Sbjct:    5 SERYAYATLVTTDEYAIGAEVLLQSLKEFSSNAAIHR---------VVLITPNVSTSARARLQRVGCEVLEVMPLSMASCPSASDHVSGWAEVGYTKLRIWGLVQYTKIFYIDADCLVVGAVEDVFKRDVDFAAAPDVFPPDKFNAGVLLVKPNEAIFQDMMRKIPELPSYDGGDTGFLNAYFPNWFTYAAEARLPFGYNAQRTMYWMTHEKAPAYWNEAVKPLKIIHFCSSPKPWEG-KKKGDLEMLWWAKFVTAQSSDL 255          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: A0A7S3NMD1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMD1_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.680e-91
Identity = 135/263 (51.33%), Postives = 180/263 (68.44%), Query Frame = 1
Query:   19 SDHEAFVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQTKRKALQDAADEVVEVEPIAIPVQKDAGHVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQMKVGSMPGMG 807
            S  EA+ T++T++DFV G EVLLHSL++   D             L+V+VT+ + +T R+ L   A  + EVEPIA P ++      SW   GYTKLR+W L +Y+ +VY+DADA+V+ ++DELF  E  FAAAPD+FPPD FNAGV+V+ P L V + M+  V    ++DGGDTGFLN+YF DWFS PA ARLPF YNA RT++W TH K PGYW +I P+KI+HF SSPKPW++ K KG++E+IWWQ  L ++    PG G
Sbjct:   12 STREAYATLITSEDFVDGGEVLLHSLKKTGTDRD-----------LIVVVTSDICKTSRQRLSRIAQRICEVEPIANPFERQDA---SWKGSGYTKLRLWTLVEYRCIVYIDADAVVLSNIDELFFLETHFAAAPDLFPPDKFNAGVLVLRPDLDVFQQMMETVPLAKTHDGGDTGFLNSYFHDWFSYPANARLPFRYNAQRTLFWMTHQKTPGYWNSIKPIKILHFVSSPKPWQDTKSKGEIELIWWQFALDLRS---PGGG 257          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: A0A2D4CD68_PYTIN (Glycosyltransferase putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD68_PYTIN)

HSP 1 Score: 269 bits (688), Expect = 2.960e-87
Identity = 134/262 (51.15%), Postives = 177/262 (67.56%), Query Frame = 1
Query:   31 AFVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVS-----QTKR--KALQDAAD-EVVEVEPIAIPVQKDAG--HVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQMKV 786
            A+VT++T+D F IG E L +SL                  PLVV+ T  VS     + +R   ALQ      +  V  I IP    AG  HV  W   GY+KL V+ L +++++VY+DAD LV+E++D+LF+RE DFAAAPDVFPPD FNAGV+VV PS V  E++ +++  L SYDGGDTGFLNA+F DWF   AA+RLPF YNA RT+YW  +DKNPGYW+A+ P+KI+HF S+PKPW++P+RKGDLEM+WWQ Y + + 
Sbjct:    4 AYVTLLTSDAFSIGVEALAYSL-----------FRTRPRYPLVVLHTPQVSAACCAKLERFFAALQSQLPISLRRVPDIGIPELTPAGSVHVAGWVNSGYSKLHVFALEEFEKIVYIDADCLVLENVDDLFERETDFAAAPDVFPPDRFNAGVLVVTPSAVRFEELHARINTLKSYDGGDTGFLNAFFRDWFCSDAASRLPFRYNAQRTMYWLVNDKNPGYWDAVQPIKILHFSSNPKPWDDPRRKGDLEMLWWQLYTESRA 254          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: A0A7S4N210_GUITH (Hypothetical protein n=4 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N210_GUITH)

HSP 1 Score: 268 bits (685), Expect = 1.060e-86
Identity = 129/253 (50.99%), Postives = 173/253 (68.38%), Query Frame = 1
Query:   28 EAFVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQTKRKALQDAADEVVEVEPIAIPVQKDAGHVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQMKV 786
            EA++TMVT+D +++GA VL HS+ +                P+  MVT  VS   RKAL+ A   ++ VE I+    K++  + +W + GYTKL +W LT++ ++VYVDAD LVME +D+LF RE  FAAAPD FPPD FNAGV+VV PSL V EDM+S++  + SYDGGDTGFLN+YF DWF+   A+RLPF YNALRT+YW T  K PGYW A+G V+ +HFCS PKPW++   KG+LE  WW  + + ++
Sbjct:   11 EAYITMVTSDSYLMGALVLAHSILK--------TQDKSNQRPICCMVTDEVSADSRKALEQAGLRIIMVESIS---SKESSGIDAWDQSGYTKLNIWKLTEFSKLVYVDADCLVMESIDDLFSRETRFAAAPDTFPPDRFNAGVLVVEPSLEVFEDMISRIGVMHSYDGGDTGFLNSYFHDWFTMGEASRLPFRYNALRTMYWLT-QKKPGYWNAVGAVRCLHFCSFPKPWDQAP-KGELEQKWWVAFAECQL 250          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: W7TND6_9STRA (Unidentified vitellogenin-linked transcript family member (Uvt-5) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TND6_9STRA)

HSP 1 Score: 268 bits (684), Expect = 5.340e-86
Identity = 140/282 (49.65%), Postives = 182/282 (64.54%), Query Frame = 1
Query:   31 AFVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQTKRKALQDAADEVVEVEPIAIPVQKDAGHVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEE--LPSYDGGDTGFLNAYFPDWFSRP-----------------------AAARLPFAYNALRTVYWTTHDKNPGYWEAIGP-VKIIHFCSSPKPWEEP--KRKGDLEMIWWQRYLQMKVGS 792
            AFVT++T D F  GA+VLLHSLR                  +VV+VT  +S+  RK L+   DE++ VEPIA P  +++ HV  W   G+TKL++WGLTQ++RVVY+DAD LV+ED+ ELF  +VDFAAAPD+FPPD FNAGVM+V P+L V EDML  V+   LPSYDGGDTGFLNA+FP W+S P                       + ARLPF +NA RT++W TH   PGYW A+   VKI+HF SSPKPWE    ++KG+LE+ WW  +++M +  
Sbjct:   25 AFVTLLTTDSFGPGAQVLLHSLRT---SISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENS-HVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHMAK 302          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: K3WC47_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC47_GLOUD)

HSP 1 Score: 266 bits (679), Expect = 8.630e-86
Identity = 127/269 (47.21%), Postives = 176/269 (65.43%), Query Frame = 1
Query:   31 AFVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQ-TKRKALQDAAD--------EVVEVEPIAIP---VQKDAGHVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQMKVGSMPG 801
            A+ T++T+D +V+G E L++SL +                PLVV+ ++ V+Q T  K  +  A             V  I IP     +   HVP W   GYTKL ++ +  ++++VY+DADA+V++++DELFDR   FAAAPDVFPPD FNAGV+V+ P+  +  D+L+K +EL SYDGGDTGFLNA+FP WF   AA+RLPF YNA RT+YW  + KNPGYW A+ P+KI+H+ S+PKPWE+P RKGDLE++WWQ Y + +  S  G
Sbjct:    9 AYATLITSDAYVMGVEALVYSLFK-----------ARVAFPLVVLHSSQVTQPTVAKLTRFCAPFQSSTWRISFRSVPDIGIPDEVTDRSTVHVPGWVNSGYTKLHIFAMDDFEQIVYIDADAIVLQNVDELFDRSTSFAAAPDVFPPDRFNAGVLVIRPNKQLFADLLAKAKELKSYDGGDTGFLNAFFPKWFESDAASRLPFGYNAQRTMYWLVNGKNPGYWNAVQPLKILHYSSNPKPWEDPSRKGDLEILWWQMYTESRCMSFLG 266          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: A0A485KJZ5_9STRA (Aste57867_8336 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJZ5_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.730e-84
Identity = 122/253 (48.22%), Postives = 170/253 (67.19%), Query Frame = 1
Query:   34 FVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQTKRKALQDAADEVVEVEPI-AIPVQKDAGHVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREV---DFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQM 780
            + T+VT+D+FVIG EVL +SLR++               PL+V+ T  +S    + LQ           + A+P      HVP W   GYTKL V+ L ++ +V Y+D+DA V+ ++D++F+R++    FAAAPD+FPPD FNAGV++V PS  +  D++ ++  LPSYDGGDTG+LNA+FPDWF+  + ARLPFAYNA RT++W THD  PGYW+A+G VKI+H  SSPKPWE P +KG+LEM+WW  Y +M
Sbjct:    7 YATLVTSDEFVIGVEVLAYSLRKY-----------GAKFPLLVLYTDQLSAHGVQKLQRIDPATTTPRRVDALPNPNVEVHVPGWVNSGYTKLHVFNLVEFAKVFYIDSDAFVLANVDDMFERDIAPYPFAAAPDIFPPDRFNAGVLLVQPSAALFRDLMDQIALLPSYDGGDTGYLNAFFPDWFTSDSRARLPFAYNAQRTMHWLTHDTKPGYWDAVGRVKILHCSSSPKPWENPAKKGELEMLWWHYYTEM 248          
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Match: F0WEL0_9STRA (Glycosyltransferase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEL0_9STRA)

HSP 1 Score: 261 bits (666), Expect = 5.990e-84
Identity = 123/264 (46.59%), Postives = 170/264 (64.39%), Query Frame = 1
Query:   28 EAFVTMVTNDDFVIGAEVLLHSLREHCCDXXXXXXXXXXXXPLVVMVTAGVSQTKRKALQDAADEV--------VEVEPIAIPVQKD---AGHVPSWTKVGYTKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFNAGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARLPFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLEMIWWQRYLQMKV 786
            +A+ TM+T+DDF +G E LL+S                     +++ T+ VS+     L    + +        + V+ I IP       + HV SW    YTKL ++GL +Y+++VY+DADAL++ ++DELF+ +  FAAAPD+FPPD FNAGV+V+ P   V E++L+K + + SYDGGDTGFLN  F DWF R AA+RLPF YNA RT+YW  + KNPGYW+A+ P+KI+HF SSPKPWEEP R GDLEMIWW  Y + ++
Sbjct:    2 QAYATMITSDDFQMGVEALLYS-----------WSCTHSSINFLILYTSQVSKRVLDKLHRFLETLRMSERIKWMRVDSIPIPASSSDPPSSHVESWLNSAYTKLNIFGLEEYQKIVYIDADALILTNIDELFEMDTSFAAAPDIFPPDRFNAGVLVIKPGKDVFENLLAKAKTIKSYDGGDTGFLNLVFSDWFQRDAASRLPFRYNAQRTMYWMVNSKNPGYWKAVEPLKILHFSSSPKPWEEPNRIGDLEMIWWMYYTKAQI 254          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig878.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZH8_9PHAE2.040e-14779.92GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2Y0F1_9STRA7.450e-9957.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YMF4_9STRA1.380e-9753.64Glycosyltransferase, family GT8 n=1 Tax=Tribonema ... [more]
A0A7S3NMD1_9STRA1.680e-9151.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2D4CD68_PYTIN2.960e-8751.15Glycosyltransferase putative n=2 Tax=Pythium insid... [more]
A0A7S4N210_GUITH1.060e-8650.99Hypothetical protein n=4 Tax=Guillardia theta TaxI... [more]
W7TND6_9STRA5.340e-8649.65Unidentified vitellogenin-linked transcript family... [more]
K3WC47_GLOUD8.630e-8647.21Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A485KJZ5_9STRA1.730e-8448.22Aste57867_8336 protein n=1 Tax=Aphanomyces stellat... [more]
F0WEL0_9STRA5.990e-8446.59Glycosyltransferase putative n=1 Tax=Albugo laibac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig878contigP-littoralis_Contig878:2212..4988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FV93
PFAMsGlyco_transf_8
Model size816
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00171
KEGG koko:K00750
KEGG ReactionR00292,R03681
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.63e-154
EggNOG OGsCOG5597@1|root,KOG1950@2759|Eukaryota
Ec32 ortholog descriptionGlycosyltransferase, family GT8
Ec32 orthologEc-14_000240.1
EC2.4.1.186
Descriptionglycogenin glucosyltransferase activity
Cds size816
COG categoryM
CAZyGT8
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig878.2.1prot_P-littoralis_Contig878.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig878 2212..4988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.8043253-CDS-P-littoralis_Contig878:2211..23401680791758.8043253-CDS-P-littoralis_Contig878:2211..2340Pylaiella littoralis U1_48CDSP-littoralis_Contig878 2212..2340 -
1680791758.81685-CDS-P-littoralis_Contig878:2893..30361680791758.81685-CDS-P-littoralis_Contig878:2893..3036Pylaiella littoralis U1_48CDSP-littoralis_Contig878 2894..3036 -
1680791758.828436-CDS-P-littoralis_Contig878:3338..34951680791758.828436-CDS-P-littoralis_Contig878:3338..3495Pylaiella littoralis U1_48CDSP-littoralis_Contig878 3339..3495 -
1680791758.8411179-CDS-P-littoralis_Contig878:3755..38471680791758.8411179-CDS-P-littoralis_Contig878:3755..3847Pylaiella littoralis U1_48CDSP-littoralis_Contig878 3756..3847 -
1680791758.8526132-CDS-P-littoralis_Contig878:4164..42281680791758.8526132-CDS-P-littoralis_Contig878:4164..4228Pylaiella littoralis U1_48CDSP-littoralis_Contig878 4165..4228 -
1680791758.8656-CDS-P-littoralis_Contig878:4757..49881680791758.8656-CDS-P-littoralis_Contig878:4757..4988Pylaiella littoralis U1_48CDSP-littoralis_Contig878 4758..4988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig878.2.1

>prot_P-littoralis_Contig878.2.1 ID=prot_P-littoralis_Contig878.2.1|Name=mRNA_P-littoralis_Contig878.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=272bp
GHETRPSDHEAFVTMVTNDDFVIGAEVLLHSLREHCCDNSSSSSSKTRRR
PLVVMVTAGVSQTKRKALQDAADEVVEVEPIAIPVQKDAGHVPSWTKVGY
TKLRVWGLTQYKRVVYVDADALVMEDLDELFDREVDFAAAPDVFPPDNFN
AGVMVVAPSLVVLEDMLSKVEELPSYDGGDTGFLNAYFPDWFSRPAAARL
PFAYNALRTVYWTTHDKNPGYWEAIGPVKIIHFCSSPKPWEEPKRKGDLE
MIWWQRYLQMKVGSMPGMGGF*
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mRNA from alignment at P-littoralis_Contig878:2212..4988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig878.2.1 ID=mRNA_P-littoralis_Contig878.2.1|Name=mRNA_P-littoralis_Contig878.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2777bp|location=Sequence derived from alignment at P-littoralis_Contig878:2212..4988- (Pylaiella littoralis U1_48)
GGCCATGAAACTAGACCTAGCGATCATGAGGCTTTCGTTACGATGGTAAC GAACGACGACTTTGTCATCGGGGCCGAGGTGTTGCTCCATTCTCTCCGGG AGCATTGTTGTGACAACAGCAGCAGCAGCAGCAGCAAGACTCGACGACGA CCGTTGGTGGTCATGGTCACCGCTGGAGTGTCTCAGACTAAGAGGAAAGC TCTGCAGGATGCAGCGGATGAGGTTGTGGAGGTGAACCACTGCGCGTAAG CCATTTTCGTCAACCTGTGACCATTTCAATCTCCATTTTACAAGAGCGGT TTGGTCGAGTGTTTTTCGCGGCACTGTCAACTATTCGTGGATGAATCATG TACTCCGGAGTACCATACTTTTGCTGCAACGCTCGTTCCTCCCGCAACTC TGTGCTCCTGGTACATGATGTCACATGATAGAGTGTCTTCAACTGTTGTA TCTTGAAGGCTACAGTACAGGAAAACACCCAGCGTGGTATTGAACAACAC ATTATCATAGCGATATTTTTTCGTGTCGTTGGCTTTGAAGGTATTTTAGA GTTTTAGAGCCAACAAGTTTGTTCGCATCACAACACATTATCATATCATA GCGATATTTTTTCGTGTCGTTGGCTTTGAAGGTATTTTAGAGTTTAAGAG CCAACAAGTTTGTTCGCATCAACACCGACCGCACGACTCAGCTCTGAAGG TCTTCATGGTTACATAATCATGATGGTGACCTTTTCGGGCTTTTCCCCAT GAAACGGCAGGTGGAACCGATTGCGATACCAGTCCAGAAGGACGCGGGTC ACGTACCGTCATGGACAAAAGTAGGTGGGACAGCCTTGTTTGCTCTTTCG CGATCACAATACTCTACCGTAAACACCGTTCATTCCATAGCTGCGGATCA AGGAACGTTCACGACTTCACCACCTGGGGTGGAGAACTCTGGACTGGCAT CGTCGTAGACTGATCTTCAACTAGGCGATGAACGTGCTGGCCAGTCTGCC GTTCGAGTCCCGAGCGGCACCGCTCTCTGGGGTAGGGATGGCGAGAGGGT AACGGCTAATGTACCATCCGCTCGTTTCGTGCGCATCCATCCTAATCGCC ATCCTCCATGCGCCGCTGCCACCGCCACCCCGATGTTCAAGGTTACACGA AGCTGCGTGTGTGGGGATTGACGCAGTACAAGCGAGTGGTTTATGTTGAT GCGGACGCATTGGTGATGGAGGATCTTGATGAGGTGATGAAATATATATA TATATATATACCATGATACTAACGTCCAGAGTTGGCGCGAAAGCGAAAGA GGTATACTACACTGACGTCGTCCCTCCCTGGATTCCAACCGTGCTTTCTT GGTCTCTTCCGGATGTACCCGCGGGCTTTCACCGCTTACCAGAACAGTCC CACCATTGCTGGCGCATAGACTGCCTGCTGCTTTTTTGAAGCCTTGAACT CGGCGAATCGTTTGCATGTTTATCTTTGCCCGCCCGAGGACAGCTGTTCG ATCGGGAGGTGGACTTCGCCGCGGCCCCGGATGTGTTTCCGCCGGACAAC TTCAACGCCGGGGTTATGGTAGTGGCACCGTCGCTAGTTGTCCTGGAAGA CATGCTGTCCAAGGTGGAAGAGCTTCCTTCGTATGACGGCGGCGACACCG GTGAGATAACCGGGCGGGCATGGGGAGCGAGGCAACGAGAGCTCTTGTAC CGTGTTGCTGCACTGCTGTTGTGACGGCCTAGGCTAACCTCAATATCCGT TTTTGTCAGCACAGCGTCGCTGAGTGCTGGAGCTCTGGGGTGTCCTAGCC CCGCTTATGCGTTTTCAAGCGGTATGATAGGCAGCAAGTAGTGTATCTCC AATGCAGCAGCAGGCTAGACATGGTCCTCCCACTCCTCGTGCATGTGCGT GCTCATCCTCGTGCACCATGTTCTGCTCTGTCACACCGACCTCCTGCTGC AGGGTTCTTGAACGCTTATTTTCCAGATTGGTTCTCGAGGCCAGCGGCTG CCCGGCTACCCTTCGCATACAACGCGCTCCGCACAGTGTATTGGACGACC CACGACAAGAACCCTGGGTACTGGGAAGCGATCGGTCCAGTGAAGGTGCC CCTCCCGCCTCCCTCTTGTGCCATTTTGTTGTCAGATTGCTCGTTCACCG GAGTGAGATGCTCCTCGATACCGCGACTTGAAGTGCACCGCGCGCTCGGA ACTGCGGTTCGTGTGTGTCCTGGACAGTCTCGGGGGGTGTGGCGCTTGTG CCCCAGGCTTGGCCGTTTGAATGCCTCGGTTTATCCAAGACTGACGTGAA ATCGTTCGGTCTCCTTGAGTGCAATGTTGTTGGAATTACGTGATGAGTTT GTGTGTGGCTATCCAGACCAACAACGACCGTCTTCTTTCGAGCACACCAT GTTTTGTGTACTGCTTATAGCGCGAGAGGCGTTTTTTGTTTCCGTACTCA ACCAGGTATGATGGGACGGGCACCAGTCGCTCCTACGTTGTTGCCGTTTC CAGGTTTCGCTAGTTGTTGTGTGTTGCAATCATGCAGCGAATCATGCGCT CCTTCTCGGCCCACCTTCCTCCTGATGCGCGGCACGCGCTTGACGTTTTC GTCGCTCTGGCCTGCTTACTTGCTTGTCCCTCGCCGGTGAACCTACAGAT CATCCACTTCTGCAGCAGCCCCAAGCCTTGGGAAGAACCCAAACGCAAGG GGGACCTCGAAATGATTTGGTGGCAGCGCTATTTGCAGATGAAAGTGGGC TCGATGCCTGGCATGGGAGGGTTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig878:2212..4988-

>mRNA_P-littoralis_Contig878.2.1 ID=mRNA_P-littoralis_Contig878.2.1|Name=mRNA_P-littoralis_Contig878.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=816bp|location=Sequence derived from alignment at P-littoralis_Contig878:2212..4988- (Pylaiella littoralis U1_48)
GGCCATGAAACTAGACCTAGCGATCATGAGGCTTTCGTTACGATGGTAAC
GAACGACGACTTTGTCATCGGGGCCGAGGTGTTGCTCCATTCTCTCCGGG
AGCATTGTTGTGACAACAGCAGCAGCAGCAGCAGCAAGACTCGACGACGA
CCGTTGGTGGTCATGGTCACCGCTGGAGTGTCTCAGACTAAGAGGAAAGC
TCTGCAGGATGCAGCGGATGAGGTTGTGGAGGTGGAACCGATTGCGATAC
CAGTCCAGAAGGACGCGGGTCACGTACCGTCATGGACAAAAGTAGGTTAC
ACGAAGCTGCGTGTGTGGGGATTGACGCAGTACAAGCGAGTGGTTTATGT
TGATGCGGACGCATTGGTGATGGAGGATCTTGATGAGCTGTTCGATCGGG
AGGTGGACTTCGCCGCGGCCCCGGATGTGTTTCCGCCGGACAACTTCAAC
GCCGGGGTTATGGTAGTGGCACCGTCGCTAGTTGTCCTGGAAGACATGCT
GTCCAAGGTGGAAGAGCTTCCTTCGTATGACGGCGGCGACACCGGGTTCT
TGAACGCTTATTTTCCAGATTGGTTCTCGAGGCCAGCGGCTGCCCGGCTA
CCCTTCGCATACAACGCGCTCCGCACAGTGTATTGGACGACCCACGACAA
GAACCCTGGGTACTGGGAAGCGATCGGTCCAGTGAAGATCATCCACTTCT
GCAGCAGCCCCAAGCCTTGGGAAGAACCCAAACGCAAGGGGGACCTCGAA
ATGATTTGGTGGCAGCGCTATTTGCAGATGAAAGTGGGCTCGATGCCTGG
CATGGGAGGGTTCTGA
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