mRNA_P-littoralis_Contig874.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig874.7.1
Unique NamemRNA_P-littoralis_Contig874.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: A0A6H5L680_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L680_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.340e-23
Identity = 63/122 (51.64%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  112 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTPV 477
            G +Y+VADL+  M+ ED  E A   GGS+ +G++ S GG      XXXXX     T ERKGPHCMMRLVGIL ED +RPL+++SRLQA R +LD SA G R+ +W   ++RF DP + V  V
Sbjct:   16 GVDYSVADLYNAMEKEDQTELADSAGGSAPTGSS-STGGAVGPDGXXXXXGSGSNT-ERKGPHCMMRLVGILCEDSIRPLVMNSRLQATRQELDTSAGGPRNNLWTEVTDRFRDPGYHVRKV 135          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: D7FSJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 8.340e-23
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  112 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGT-AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTPV 477
            G +Y+ ADL+  MD ED  E    G  +  S  TGS    XXXXXXXXXXXXX G+  ERKGPHCMMRLVGIL ED +RPLLIDSR QA R +LD S VG R+++W   ++RF DPDH+V  +
Sbjct:   91 GVDYSAADLYDAMDKEDEEELGDFGDSAGGSAPTGSXXXXXXXXXXXXXXXXXSGSNTERKGPHCMMRLVGILCEDFIRPLLIDSRFQATRQELDTSTVGPRNDLWTEVTDRFRDPDHKVRKI 213          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: A0A6H5K6G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.720e-20
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 1
Query:  118 EYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTPV 477
            EY+ ADLF  +  ED    A   GGS+ +G  GS    XXXXXXXXXXXX     ER GPHCMMRLVGIL ED +RPLL +SRLQA R  LD S+VG R+++W   + RF DPDH+V  +
Sbjct:  291 EYSAADLFDALAEEDEAATADSAGGSAPTG--GSSXXXXXXXXXXXXXXXSGSNTERNGPHCMMRLVGILCEDVIRPLLTESRLQATRQDLDTSSVGPRNDLWTEVTARFRDPDHQVRKI 408          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: A0A6H5KTC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.350e-19
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  280 AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEV 468
            AERKGPHCMMRLVGIL ED +RPLLI+SRLQA R  L  S+VG R+++W   + RF DPDH+V
Sbjct:   90 AERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLHTSSVGPRNDMWTEVTTRFRDPDHQV 152          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: D8LJH4_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.380e-19
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  283 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTPV 477
            ERKGPHCMMRLVGIL ED +RPLLI+SRLQA R  LD S+VG R+E+W   + RF DPDH+V  +
Sbjct:  299 ERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKI 363          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 6.320e-19
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  283 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTPV 477
            ERKGPHCMMRLVGIL ED +RPLLI+SRLQA R  LD S+VG R+E+W   + RF DPDH+V  +
Sbjct:  176 ERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKI 240          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 9.600e-19
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  283 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTPV 477
            ERKGPHCMMRLVGIL ED +RPLLI+SRLQA R  LD S+VG R+E+W   + RF DPDH+V  +
Sbjct:  299 ERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKI 363          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: A0A6H5K7K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.120e-18
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  283 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTP-VEGE 486
            ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD SAVG R  +W   ++RF DP H V   V+GE
Sbjct:  208 ERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHHVRKIVDGE 276          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.010e-18
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  283 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTPV 477
            ERKGPHCMMRLVGIL ED +RPLLI+SRLQA R  LD S+VG R+++W   + RF DPDH+V  +
Sbjct:  411 ERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNDLWTEVTTRFRDPDHQVRKI 475          
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.850e-18
Identity = 64/122 (52.46%), Postives = 77/122 (63.11%), Query Frame = 1
Query:  112 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFTDPDHEVTPV 477
            G +Y+VADL+  M+ ED  E         +S         XXXXXXXXXXXX     ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD SAVG R  +W   ++RF DP H V  +
Sbjct:   23 GVDYSVADLYDAMEKEDKPEL-------EDSAGXXXXXXXXXXXXXXXXXXXSGNITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKNLWPEVTDRFRDPRHNVRKI 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig874.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L680_9PHAE4.340e-2351.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ6_ECTSI8.340e-2357.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6G9_9PHAE4.720e-2055.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTC6_9PHAE1.350e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJH4_ECTSI4.380e-1966.15Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
D7FJ39_ECTSI6.320e-1966.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU69_ECTSI9.600e-1966.15Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K7K9_9PHAE2.120e-1863.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE3.010e-1864.62Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KQ52_9PHAE6.850e-1852.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig874contigP-littoralis_Contig874:20757..21429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIC6
Model size673
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.71e-21
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791755.3818402-UTR-P-littoralis_Contig874:20756..209251680791755.3818402-UTR-P-littoralis_Contig874:20756..20925Pylaiella littoralis U1_48UTRP-littoralis_Contig874 20757..20925 -
1680791755.4064722-UTR-P-littoralis_Contig874:21282..214291680791755.4064722-UTR-P-littoralis_Contig874:21282..21429Pylaiella littoralis U1_48UTRP-littoralis_Contig874 21283..21429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791755.3947837-CDS-P-littoralis_Contig874:20925..212821680791755.3947837-CDS-P-littoralis_Contig874:20925..21282Pylaiella littoralis U1_48CDSP-littoralis_Contig874 20926..21282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig874.7.1prot_P-littoralis_Contig874.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig874 20926..21282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig874.7.1

>prot_P-littoralis_Contig874.7.1 ID=prot_P-littoralis_Contig874.7.1|Name=mRNA_P-littoralis_Contig874.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MDAEDAVEAAAEGGGSSESGATGSCGGTAAGAGGGGAAGAGVGTAERKGP
HCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERF
TDPDHEVTPVEGEHPLRR*
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mRNA from alignment at P-littoralis_Contig874:20757..21429-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig874.7.1 ID=mRNA_P-littoralis_Contig874.7.1|Name=mRNA_P-littoralis_Contig874.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=673bp|location=Sequence derived from alignment at P-littoralis_Contig874:20757..21429- (Pylaiella littoralis U1_48)
CCCGCAAGAACTCCACGGACGAGGCAATCCCCGCCGAGGTAGTTCTCGCG CTCCGGGCCACGTTGACGCTGGTTCGCGTCGACCGCAACTCGAGTACGCC CTTCAAGTTCGGGCCGAGAGTACAACGTAGCCGACCTCTTCGCCATCATG GACGCCGAAGACGCCGTCGAGGCTGCGGCAGAGGGCGGAGGAAGTTCCGA GAGTGGTGCCACCGGGTCGTGCGGCGGCACTGCTGCGGGGGCGGGGGGTG GCGGCGCCGCTGGAGCGGGGGTTGGCACCGCGGAGCGGAAAGGGCCGCAC TGCATGATGCGGCTCGTCGGCATTCTCGTAGAGGACGACGTTCGCCCGCT GCTCATAGACAGTCGGCTTCAGGCGAATCGTGCTCAGCTTGATGCCTCTG CGGTGGGATCACGCAGCGAAGTGTGGCAAGTCGCCTCGGAACGCTTCACG GACCCTGACCACGAGGTAACACCAGTGGAGGGGGAACACCCCCTCCGCCG GTAGTGACGATGGCATGAATATGTGATGTGCCAACTTGTTTTATTGCGCT GCACCCAGTAAGCCGTGTGTATACATTGTTTTGTTTTCATCACAGCGGTT CCAGGGGCAGGTCTGACCCCGGTTGGTCATCGGCACCCAGATTCGTGTAG CACAGACACACGCGAAATTTCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig874:20757..21429-

>mRNA_P-littoralis_Contig874.7.1 ID=mRNA_P-littoralis_Contig874.7.1|Name=mRNA_P-littoralis_Contig874.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig874:20757..21429- (Pylaiella littoralis U1_48)
ATGGACGCCGAAGACGCCGTCGAGGCTGCGGCAGAGGGCGGAGGAAGTTC
CGAGAGTGGTGCCACCGGGTCGTGCGGCGGCACTGCTGCGGGGGCGGGGG
GTGGCGGCGCCGCTGGAGCGGGGGTTGGCACCGCGGAGCGGAAAGGGCCG
CACTGCATGATGCGGCTCGTCGGCATTCTCGTAGAGGACGACGTTCGCCC
GCTGCTCATAGACAGTCGGCTTCAGGCGAATCGTGCTCAGCTTGATGCCT
CTGCGGTGGGATCACGCAGCGAAGTGTGGCAAGTCGCCTCGGAACGCTTC
ACGGACCCTGACCACGAGGTAACACCAGTGGAGGGGGAACACCCCCTCCG
CCGGTAG
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