mRNA_P-littoralis_Contig874.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig874.5.1
Unique NamemRNA_P-littoralis_Contig874.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: A0A6H5JXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 5.530e-54
Identity = 94/145 (64.83%), Postives = 114/145 (78.62%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 435
            N+I QPNISAEK++KMW+  KAKWN P ANW+  SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAERRA+AKREG RL+  NR G K+ KK  R QSVA+AT  A+ +A+  + PLL
Sbjct:  115 NIIQQPNISAEKITKMWSAAKAKWNTPIANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQ-KKQGRRQSVAEATSVAMKTALLDIEPLL 258          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 4.640e-51
Identity = 93/145 (64.14%), Postives = 112/145 (77.24%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 435
            N+I QPNISAEKLS+MWA  KAKWNQP+A+W+  SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDDGTG      GGA+RRA+AKREG RLH  NR GKK+  K    QSVA+AT  A+ +AI  M PLL
Sbjct:  252 NIIQQPNISAEKLSRMWATAKAKWNQPYADWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVGTGGADRRAAAKREGARLHEQNRRGKKQKNKGV-GQSVAEATSAAMKTAIKDMEPLL 395          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: A0A6H5KNY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY9_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.020e-50
Identity = 92/145 (63.45%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 435
            N+I QPNISAEK++KMW+  KAKWN P+ANW+  SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAER A+AKREG RL+  NR G  + KK  R QSVA+AT  A+ +A+  + PLL
Sbjct:  279 NIIQQPNISAEKITKMWSAAKAKWNTPNANWKRESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGDGNGCTGGAERLAAAKREGARLYEQNRRGTMQKKKGGR-QSVAEATSVAMKTALLEVEPLL 422          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.270e-49
Identity = 91/145 (62.76%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 435
            N+I QPNISAEK++KMW+  KAKWN P+ANW+  SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN  LP D QREDDGTG   G  GGAERRASAKREG RL   NR G K+ KK    Q+VA+AT  A+ +A+  + PLL
Sbjct:  273 NIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQNVAEATSVAMKTALLDIEPLL 416          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: A0A6H5KFU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU0_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 6.380e-48
Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 435
            N+I QPNISAEK++KMW+  KAKWN P+ANW+  SGNNQPW++F QGD+D +++G AI+KYPELDQVCN  LP D QREDDGTG   G  GGAERRASAKREG RL   NR G K+ KK    QSVA+AT  A+ +A+  + PLL
Sbjct:  435 NIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFAQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQSVAEATSVAMKTALLDIEPLL 578          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.350e-47
Identity = 91/145 (62.76%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 435
            N+I QPNISAEKLS+MWA  KAKWNQP+ANW+  SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDDGTG      GGA+RRA+AKREG RL+  NR GKK   K    QSVA+AT  A+ +A+  + PLL
Sbjct:  487 NIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVCTGGADRRAAAKREGARLNEQNRRGKKPKNKGV-GQSVAEATSAAMKTALKDIEPLL 630          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.010e-44
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKK 345
            N+I QPNISAEKLS+MWA  KAKWNQP+ANW+  SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDD TG      GGA+RRA+AKREG RLH  NR GKK
Sbjct:  375 NIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDWTGEGIVGTGGADRRAAAKREGARLHEQNRRGKK 489          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: A0A6H5KNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM0_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 5.020e-44
Identity = 86/135 (63.70%), Postives = 107/135 (79.26%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGT-SGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAV 402
            N+I QP+I AEK++K W+  KAKWN P+ANW+ + SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAERRA+AKREG RL+  NR G K+ K+  R QSVA+AT  A+
Sbjct:  809 NIIQQPDIFAEKITKTWSAAKAKWNTPNANWKKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQKKEGGR-QSVAEATSVAM 942          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: A0A6H5JSN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN7_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 9.870e-38
Identity = 78/145 (53.79%), Postives = 97/145 (66.90%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 435
            N+I QPN SAEK++  W+  +A WN P+ANW   SGNNQPWV+F QGD+D +++G A +KYPELDQVCN LLPED QREDDGTG      GGAERR +AKREG RL   N             +SVA+A   A+ +A+  + PLL
Sbjct:  410 NIIQQPNRSAEKITNTWSAARANWNTPYANWTSESGNNQPWVSFSQGDTDTYILGCAFEKYPELDQVCNNLLPEDAQREDDGTGEGDACTGGAERRTAAKREGARLDEQNXXXXXXXXXXX-GKSVAEAMSVAMKTALLDIEPLL 553          
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.070e-37
Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    1 NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 435
            N+I QPNISAEK++ M +  KAKWN P+ANW+   GNNQPW++FCQGD+D +++G A++KYPELDQVCN LLPED QREDD TG   G                  +  NR G K+ KK  R QSVA+AT  A+ +A+  + PLL
Sbjct:  149 NIIQQPNISAEKITPMRSAAKAKWNTPNANWKSEPGNNQPWLSFCQGDTDTYILGCAVEKYPELDQVCNNLLPEDAQREDDRTGEGDG--------------WREAYEQNRRGTKQKKKGGR-QSVAEATSVAMKTALLDIEPLL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig874.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXZ6_9PHAE5.530e-5464.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ39_ECTSI4.640e-5164.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNY9_9PHAE2.020e-5063.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZX9_9PHAE1.270e-4962.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFU0_9PHAE6.380e-4862.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE2.350e-4762.76Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7FU69_ECTSI1.010e-4468.70Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KNM0_9PHAE5.020e-4463.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSN7_9PHAE9.870e-3853.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ52_9PHAE3.070e-3751.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig874contigP-littoralis_Contig874:18887..20657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIC6
Model size543
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.94e-51
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791755.3254445-CDS-P-littoralis_Contig874:18886..192901680791755.3254445-CDS-P-littoralis_Contig874:18886..19290Pylaiella littoralis U1_48CDSP-littoralis_Contig874 18887..19290 -
1680791755.3461144-CDS-P-littoralis_Contig874:20518..206571680791755.3461144-CDS-P-littoralis_Contig874:20518..20657Pylaiella littoralis U1_48CDSP-littoralis_Contig874 20519..20657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig874.5.1prot_P-littoralis_Contig874.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig874 18887..20657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig874.5.1

>prot_P-littoralis_Contig874.5.1 ID=prot_P-littoralis_Contig874.5.1|Name=mRNA_P-littoralis_Contig874.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp
NVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSD
IFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAK
REGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLLASMKP
DTANGRPQTDDPERQVAEIVLADECMTAHEN
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mRNA from alignment at P-littoralis_Contig874:18887..20657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig874.5.1 ID=mRNA_P-littoralis_Contig874.5.1|Name=mRNA_P-littoralis_Contig874.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1771bp|location=Sequence derived from alignment at P-littoralis_Contig874:18887..20657- (Pylaiella littoralis U1_48)
AACGTAATCCACCAACCGAACATTTCCGCGGAAAAGCTCTCCAAAATGTG GGCGGGGGTGAAGGCGAAGTGGAATCAGCCCCACGCAAACTGGAGGGGCA CGTCTGGCAACAATCAGCCTTGGGTGAACTTCTGCCAAGGTAAGAATGCC GTTCGAGAGTGGGAGGGAAACTCACATGCGTAGATTAAACGTTGTAAAGG GGCCTTCGGCATAAACTGTTCAGCGTGTCAATTTTCTTGTCGGCCGTAGG CGAGACGCTGCCTTACCGGTCTTGTTTAGGTGATTCGATTCTGCACCGGT TCGTTTGTGTTTCTCATTTCACCTTGTACTTCGGGTGCAAGGGAACAAGT TGGGCTCACCATCCGGGTTTAGACGATCGTCAGGTCAACAAACGTTTTTT TGCAAGGGTGTACATAGACTGCTGCCGGGCCGATTGTTCCCGGATTTTGA CGGAAGTGCTGGTGATTTCGGCCCGTCCCGGCAAAAACATAAAAATAACC GGCCCGTCCCGGCCCCCGGAAAGAAAATAAAAAAACATTATACCCGCCCG TCCCGGCACATGAGGAAAAAAAAACGGCCCGGCCCGGCGCGTGAAAAAAC CTCCATTCCCGGCACGTGAAAAAAAAACGTCCGCCCGGCCCGGCAAGTGG ACACAAAATTATCGCTCTATCCCGGCCATGTGAATACAAAAACTACAGAA TACTCGCGGTAAAGGCACAATGCAAAAAACAACAATTTGCGTGCGATTGG TCACACCCTCGTCGTATCCAGTATACACTCCGCAAATGTCCCGGTGCTGA AAATGAAAACTACCGGCCCGTCCCGGCACGTGAAAGCAAAAACTACTGGC TCGTCCCGGCACGTGAAAACAAAAACAACCGGCCCGGCCCGGCACGTGAA AAGAAAAAATCGGCTCGGCCCGGGTGGAATATTCCCGGCAAAACTACCGT CCCGGCAAGAATTAAAACCAAGTTTTGGCACTCCGGCGCTACCGTTTTTT TTTTTTGTCGTCCACCCGAATTCTCCTCCCGGCCCGGCAAATTCCAATTT TAGCAGGCCATGTACACCCTTGCTTTTTTGTTCGCCTTCCTCGTGCGGTG CTCGCCAATGACCTCGTTTCCCCTCACGATTAATTCTGTGAGCTTAAACC CCCTTCATCAGCATTCGACCTCCTGACCTAGCTGTAACATCTAATCGAGG TTACAGACTAAACAACCGGGGCGGCTCTGGGTGCATTTGAATCTTGGAAA ATTTCAGCACATGTAGACGTACATGGGGTGAGGCGTAGTTCTGACGAATA GCCTGTGCGCTATGCTTGGCCCCTGCTGCCTGCCCCCCCCCCCCCCCCCC CCGCTTTGACCGTCCAGGCGATTCCGACATTTTCCTCGTCGGTGAAGCTA TTAAAAAGTACCCCGAATTAGACCAGGTGTGCAACGCGCTATTACCAGAA GACGTCCAGCGAGAAGACGACGGGACCGGAGCAGCAGCTGGGGAGGCGGG CGGCGCGGAACGCAGGGCGTCAGCCAAGCGCGAGGGCGAGCGGCTACACG GTATGAACCGTGCCGGCAAGAAGAAGGCTAAAAAGGACGAGAGGGCGCAG AGCGTGGCCGACGCTACGGAGAAGGCCGTGAGTTCGGCCATTGCGGGGAT GGCACCGTTGCTGGCATCGATGAAGCCGGACACCGCAAACGGGCGTCCCC AAACTGATGATCCGGAGCGCCAGGTTGCAGAAATCGTCCTCGCCGACGAA TGCATGACCGCCCATGAAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig874:18887..20657-

>mRNA_P-littoralis_Contig874.5.1 ID=mRNA_P-littoralis_Contig874.5.1|Name=mRNA_P-littoralis_Contig874.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig874:18887..20657- (Pylaiella littoralis U1_48)
AACGTAATCCACCAACCGAACATTTCCGCGGAAAAGCTCTCCAAAATGTG
GGCGGGGGTGAAGGCGAAGTGGAATCAGCCCCACGCAAACTGGAGGGGCA
CGTCTGGCAACAATCAGCCTTGGGTGAACTTCTGCCAAGGCGATTCCGAC
ATTTTCCTCGTCGGTGAAGCTATTAAAAAGTACCCCGAATTAGACCAGGT
GTGCAACGCGCTATTACCAGAAGACGTCCAGCGAGAAGACGACGGGACCG
GAGCAGCAGCTGGGGAGGCGGGCGGCGCGGAACGCAGGGCGTCAGCCAAG
CGCGAGGGCGAGCGGCTACACGGTATGAACCGTGCCGGCAAGAAGAAGGC
TAAAAAGGACGAGAGGGCGCAGAGCGTGGCCGACGCTACGGAGAAGGCCG
TGAGTTCGGCCATTGCGGGGATGGCACCGTTGCTGGCATCGATGAAGCCG
GACACCGCAAACGGGCGTCCCCAAACTGATGATCCGGAGCGCCAGGTTGC
AGAAATCGTCCTCGCCGACGAATGCATGACCGCCCATGAAAAT
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