mRNA_P-littoralis_Contig872.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig872.27.1
Unique NamemRNA_P-littoralis_Contig872.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 392 bits (1006), Expect = 2.160e-133
Identity = 185/265 (69.81%), Postives = 214/265 (80.75%), Query Frame = 3
Query:  120 RAQDLDGPPDTRQGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKREDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLHD 914
            R +  D P    +GNCFDD+ QLS MSKSMA  TFHKFC++FA EMF+EHIYLPTGTY DEVM  + +LG+TGA GSTDVTH+GW MCPFTLGRSFTGKEGFPT+A++VTVDH GR + VT GFTGATNDKTI+RYD+ V  IR    Y +REYKLRKA+GT+  R+GC+LIVDNGYHEWVTL+APSKYP   +D AFS+ LESVRKDV CF  ILK R    KRE +DNIFFTCCILHNMLH+FDG+ VF+E+ DW GSAG HD
Sbjct:   34 RIRASDVPQVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF-RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHD 297          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 2.940e-120
Identity = 170/298 (57.05%), Postives = 219/298 (73.49%), Query Frame = 3
Query:   39 EVGGAVEEEEVVLRRRSGCSRP*GYPSRAQDLDGPPDTRQGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLH 911
            E+   V++ +     +   S   G P + + L       +GNCF DI  +S +S   AAATFH+F + FA+EM+ EHI+LPTG YQ +VM  Y +LGF+GA GSTDVTH+ WGMCP+   RS+TGKEG+PT+A++VTVDH  R + VT GFTG+TNDK+I+RYD AV  IR + +Y ++E+ + +ADGT +  KGCYL+VDNGYH+WVTL+ PSKYP D +D AFSK LESVRKDVECFFGI+KGRFRILK       +EDIDN+FFTCCILHNMLHS+D  S  +E+ +WAG+AGLH
Sbjct:  129 ELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLH 426          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 6.320e-112
Identity = 158/259 (61.00%), Postives = 195/259 (75.29%), Query Frame = 3
Query:  156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLH 911
            +GN F DI  +S +S    A+TFH+FCK FA E+++E++YLPTG    +VM+ Y ++GF GA+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+GFTGATNDKTI+RYD AV  IR + VY +++YKL   DG +F  KGCYL+VDNGYH+W TL+ PSK P D  D  FSK LES RKDVEC+FGILKGRFRI K       +E IDN+FFTCCILHNMLHSFD      E+ +WAGSAGLH
Sbjct:   93 RGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLH 351          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 6.230e-111
Identity = 163/239 (68.20%), Postives = 186/239 (77.82%), Query Frame = 3
Query:  156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHS 851
            +GNCFDD+ QLS MS+S+A A FHKFC++ A EMF+EHIYLPTGTY DEVM  + +LG TGA GSTDVTH+G  MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT GF G TNDKT +RYD+ V  IR    Y +REYKLRK +GTE TR+GC+LIVDNGY+E              +D AFS+ LESVRKDVECFFGILKGRFRILK       RE IDNIFFTCCILHNMLH+
Sbjct:  142 KGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 1.070e-110
Identity = 158/259 (61.00%), Postives = 195/259 (75.29%), Query Frame = 3
Query:  156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLH 911
            +GN F DI  +S +S    A+TFH+FCK FA E+++E++YLPTG    +VM+ Y ++GF GA+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+GFTGATNDKTI+RYD AV  IR + VY +++YKL   DG +F  KGCYL+VDNGYH+W TL+ PSK P D  D  FSK LES RKDVEC+FGILKGRFRI K       +E IDN+FFTCCILHNMLHSFD      E+ +WAGSAGLH
Sbjct:  184 RGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLH 442          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 2.700e-108
Identity = 161/260 (61.92%), Postives = 186/260 (71.54%), Query Frame = 3
Query:  156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLHD 914
            +GNCFDD+ QLS MS SMA ATFHKFC++FA EMF+EHI+ PT TY DE M  + +LG TGA  STDVTH+   MCPFTLGRSFTGKEGFPT+A+EVTVDHA RA+ VT GFTGA NDKT++ YD+ V  IR    Y +R+YKLRKA+GTE TR+GC+ IVDNGYHE                            DVECFFGILKGRFRILK       RE IDNIFFTCCI HNMLH+FDG+ +F+E+ DW GSAG HD
Sbjct:  107 KGNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHE----------------------------DVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNMLHTFDGLDLFEENTDWTGSAGHHD 338          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 9.530e-107
Identity = 175/319 (54.86%), Postives = 199/319 (62.38%), Query Frame = 3
Query:  225 HKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNG----------YHE---------------WVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK----------------------------------------------------------------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLHD 914
            HKFC++FA EMF+EHIYL TGTY DEVM  + +LG TGA GST+VTH+GW MCPFTLGRSFTGKEGFPT+A EVTVDHAGRA+ VT GFTGATNDKTI+RYD+ V  IR    Y +REYKLRKA+GTE TR+GC+LIVDNG          +H+               WVTL+APSKYP   +D AFS+ LESVRKDVECFFGILKGRFRILK                                                                RE IDNIFFTCCILHNMLH+FDG+ VF+E+ DW GSAG HD
Sbjct:  246 HKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTGGXFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHD 564          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 3.950e-104
Identity = 152/259 (58.69%), Postives = 186/259 (71.81%), Query Frame = 3
Query:  156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAG 905
            +GNCF  I Q+S MS       FHKFCK+FA+EM++EHIYLP+      D VM  Y +LGF+GA+GS DVTH+GW  CP+ L RS+TGKEG PT+ ++VTV+HAGRAI VT+GFT +TNDKT V +DA V+ IR +  Y ++ + +   DGT  T KGCYL+VDNGYH+W  LM P+KYP   +D  FSK LESVRKDVECFFGILKG FRI K       +E IDN+FFTCCILHNMLH+FDGM    E+  W  SAG
Sbjct:  108 RGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAG 366          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 3.370e-102
Identity = 153/260 (58.85%), Postives = 186/260 (71.54%), Query Frame = 3
Query:  156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGL 908
            +GN F  I  LS MS       FH+FC++FA EM++EHI+LP+      D VM  Y KLGF GA+GSTDVTH+GW  CP+  GRS+TGKEG PT+ ++VTV+HAGR + VT+GFTG+TNDKTI+  D AV  IR +K Y ++ + + K DGT  T KGCYLIVDNGYH+W  L+ PSKYP    D  FSK LESVRKDVECFFGILK RFRILK       +E +D +FFTCCILHNMLH+ DGM   +EDV+W GSA L
Sbjct:  137 RGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAEL 396          
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 3.690e-100
Identity = 155/288 (53.82%), Postives = 190/288 (65.97%), Query Frame = 3
Query:  156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYK----------------------------DREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGL 908
            +GNCF  I Q+S MS       FHKFC++FA+EM++E I+LPT      D VM  Y +LGFTGA+GS DVTH+ W  CP+   RS+TGKEGFPT+A++VTVDHAGRAI VT+GFTG+TNDKTIV +D AV+ I  +K Y                             ++ + +   DGT  T KGCYL+VDNGYH+W  L+ PSKYP   +D  FSK LESVRKDVECFFGILKGRFRILK       +E IDN+FFTC ILHNMLH+FDGM    E+ +W  SAG+
Sbjct:   95 RGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGV 382          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K796_9PHAE2.160e-13369.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE2.940e-12057.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE6.320e-11261.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE6.230e-11168.20DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JPH7_9PHAE1.070e-11061.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE2.700e-10861.92DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KEB6_9PHAE9.530e-10754.86DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE3.950e-10458.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE3.370e-10258.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE3.690e-10053.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig872contigP-littoralis_Contig872:107459..109783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size914
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.15e-95
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size720
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791754.393201-UTR-P-littoralis_Contig872:107458..1075871680791754.393201-UTR-P-littoralis_Contig872:107458..107587Pylaiella littoralis U1_48UTRP-littoralis_Contig872 107459..107587 +
1680791754.407433-UTR-P-littoralis_Contig872:108431..1084961680791754.407433-UTR-P-littoralis_Contig872:108431..108496Pylaiella littoralis U1_48UTRP-littoralis_Contig872 108432..108496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791754.4209416-CDS-P-littoralis_Contig872:108496..1089581680791754.4209416-CDS-P-littoralis_Contig872:108496..108958Pylaiella littoralis U1_48CDSP-littoralis_Contig872 108497..108958 +
1680791754.4327211-CDS-P-littoralis_Contig872:109525..1097831680791754.4327211-CDS-P-littoralis_Contig872:109525..109783Pylaiella littoralis U1_48CDSP-littoralis_Contig872 109526..109783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig872.27.1prot_P-littoralis_Contig872.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig872 108497..109783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig872.27.1

>prot_P-littoralis_Contig872.27.1 ID=prot_P-littoralis_Contig872.27.1|Name=mRNA_P-littoralis_Contig872.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
MSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAI
GSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFT
GATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDN
GYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKR
EDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLHD
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mRNA from alignment at P-littoralis_Contig872:107459..109783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig872.27.1 ID=mRNA_P-littoralis_Contig872.27.1|Name=mRNA_P-littoralis_Contig872.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2325bp|location=Sequence derived from alignment at P-littoralis_Contig872:107459..109783+ (Pylaiella littoralis U1_48)
TTCCGAGAGCGCTTTCGCGTGCCTCACGCCTTCTTCCTGAGGTTGGTGGA GCTGTCGAGGAAGAAGAAGTGGTTCTCAGACGGAGGAGCGGATGCAGCAG GCCGTGAGGGTATCCCAGTAGAGCTCAAGGTGCACTTGAAAATGACACTT CGTACGAAGCATAACATACTGGAAAATAATATAGATGGTATGTGTACAAG TACAAAATACAGCAGCTTTCCACTGCTGTACATCACACAACTGCTGTCCA CACACCGCCGTCCACCTCATGACTGCAGCACAACTGCTGCACTTGATGAA AGTCTGCATGCCTTTCGGGGCCGGTATATTTGTGAAGCACTTGCAGCTGT AGGGTATGCGAGACCAATCAAGTGCGCAACGATTTTTGTGGGTCGGCTCG ACGAGGACTAGCGAATGAACTTATTCTGGATAACAAAGTGCCGCAGACGG ATATCATCACAGCAGTGTGTGTTGCTGATGCTGCCGAAGATACCGCTGCA GGTTTTTGGGTACTCTTCTGTGCCCCACTCCTGGGTCGGTGGTTATTACG AGGTACTTATATTCCGAACCTTTCTTGATTGGTCGTTTCGGGTCGAGTGG GTGCGGAAACACGGGAATGCAACCATACATGACTGCTGTACTGCTGTAGA CTGGCGTGCAGAATAGATGGGATGGCAATACAACACAACAGTATTTATTA CGCTTTCACGTAAAAAAAAACATGCCGTTGCTGCGCCACCACGTGACGCT ATTCCGACACAACAGCTGTCACGATGTGTGTATGTGAAAGTCAAAACATC ATCCGTAATACGAAATCATGTATCTGCCTGATTCGTATACACGGACTATT TAAAATGGTAGTTGTCCAGCCGAGCGAATCGGGCAACAGCAACTACTTGA CTGATGGACACTCCCGCCCCCCTTTTCTCCCCGCCGCCGCGCGCGCTCCC CTCCCCCTGACATTATTCGACAGATCTTGACGGCCCTCCAGATACTCGGC AGGGCAACTGCTTCGACGACATCAACCAGCTGTCGTTAATGAGCAAATCG ATGGCGGCAGCAACGTTCCACAAGTTCTGCAAGAACTTCGCGAAGGAGAT GTTCGAGGAGCATATCTACCTTCCAACAGGAACGTACCAAGACGAAGTGA TGGACTGCTACCGCAAACTGGGTTTTACTGGAGCAATCGGTTCTACCGAC GTCACTCACGTCGGTTGGGGCATGTGTCCGTTCACCCTTGGCCGTTCTTT CACGGGCAAGGAGGGGTTTCCAACCCTGGCGTTCGAGGTTACCGTCGACC ACGCGGGCCGCGCCATTGGCGTCACCCAAGGGTTCACCGGTGCGACCAAC GACAAGACGATCGTCCGCTACGACGCAGCCGTACAGACCATCAGGAACAA CAAAGTGTACAAGGATCGAGAGTACAAGCTCAGGAAGGCGGATGGCACGG AGTTCACCCGGAAAGGATGCTATTTGATCGTCGACAACGGCTATCACGAG GTGAGTGTATTGGGGGCGTGGGGAGTATTAGAATATCCGAACGTAGTGCG TGCTCCGTGACGCTTCGGGTTGATGTGAAGCCCGAAAAATACACGCCGGT ACACCGAAAGCAGACCAATGCCATATTTGTCGGTACTGGACGAGGATATT TATGGCATGTCGGCCCCGTGCATCGGGCGTCGACCTTACGCAGCGGCACA CCAAGGTGAAAAACGTTTTGCCGCTTCGCGTTCCTTCTATTTGTAGTTGT TTTCGTGCTGGTTCCGTTTGGACGGTTGCGTTCACTTTTTTACATTTCGA GCATACATCACCCCATTTATAACACCAAAGGTTTTAACAAACAAATCTGC TCAGGGGTGGTCAGATGGCAAATATTGTACTTCGAAGTACAAAGTTGTAG GCATCTGTGTTGCCCACATGTCCACACGGTTCCTCGTTCCCCCGAGGAGT TTGATCGTGAAAATATGTGCGTCGGGGCCTGAGGTTTCCAGAGCCTTTCC GTAGCTCACCAGTCGTCCCTTTCGACCCCCCCTGCTACTGTTGTGCCGTC GTGTGCCAAATCAACAGTGGGTCACCCTCATGGCCCCATCGAAGTACCCG GGTGACGTGGATGACGCGGCCTTCTCCAAGATGCTTGAGAGTGTGCGCAA GGATGTGGAGTGTTTCTTCGGCATTCTGAAAGGGCGCTTCAGAATCCTGA AGCGGGAAGACATCGATAACATCTTCTTCACGTGCTGCATTCTCCACAAC ATGCTCCACTCCTTCGACGGCATGAGCGTGTTCAAGGAGGACGTCGACTG GGCAGGCAGTGCTGGTCTGCACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig872:107459..109783+

>mRNA_P-littoralis_Contig872.27.1 ID=mRNA_P-littoralis_Contig872.27.1|Name=mRNA_P-littoralis_Contig872.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig872:107459..109783+ (Pylaiella littoralis U1_48)
ATGAGCAAATCGATGGCGGCAGCAACGTTCCACAAGTTCTGCAAGAACTT
CGCGAAGGAGATGTTCGAGGAGCATATCTACCTTCCAACAGGAACGTACC
AAGACGAAGTGATGGACTGCTACCGCAAACTGGGTTTTACTGGAGCAATC
GGTTCTACCGACGTCACTCACGTCGGTTGGGGCATGTGTCCGTTCACCCT
TGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCAACCCTGGCGTTCGAGG
TTACCGTCGACCACGCGGGCCGCGCCATTGGCGTCACCCAAGGGTTCACC
GGTGCGACCAACGACAAGACGATCGTCCGCTACGACGCAGCCGTACAGAC
CATCAGGAACAACAAAGTGTACAAGGATCGAGAGTACAAGCTCAGGAAGG
CGGATGGCACGGAGTTCACCCGGAAAGGATGCTATTTGATCGTCGACAAC
GGCTATCACGAGTGGGTCACCCTCATGGCCCCATCGAAGTACCCGGGTGA
CGTGGATGACGCGGCCTTCTCCAAGATGCTTGAGAGTGTGCGCAAGGATG
TGGAGTGTTTCTTCGGCATTCTGAAAGGGCGCTTCAGAATCCTGAAGCGG
GAAGACATCGATAACATCTTCTTCACGTGCTGCATTCTCCACAACATGCT
CCACTCCTTCGACGGCATGAGCGTGTTCAAGGAGGACGTCGACTGGGCAG
GCAGTGCTGGTCTGCACGAC
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