mRNA_P-littoralis_Contig872.27.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 392 bits (1006), Expect = 2.160e-133 Identity = 185/265 (69.81%), Postives = 214/265 (80.75%), Query Frame = 3
Query: 120 RAQDLDGPPDTRQGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKREDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLHD 914
R + D P +GNCFDD+ QLS MSKSMA TFHKFC++FA EMF+EHIYLPTGTY DEVM + +LG+TGA GSTDVTH+GW MCPFTLGRSFTGKEGFPT+A++VTVDH GR + VT GFTGATNDKTI+RYD+ V IR Y +REYKLRKA+GT+ R+GC+LIVDNGYHEWVTL+APSKYP +D AFS+ LESVRKDV CF ILK R KRE +DNIFFTCCILHNMLH+FDG+ VF+E+ DW GSAG HD
Sbjct: 34 RIRASDVPQVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF-RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHD 297
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 362 bits (930), Expect = 2.940e-120 Identity = 170/298 (57.05%), Postives = 219/298 (73.49%), Query Frame = 3
Query: 39 EVGGAVEEEEVVLRRRSGCSRP*GYPSRAQDLDGPPDTRQGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLH 911
E+ V++ + + S G P + + L +GNCF DI +S +S AAATFH+F + FA+EM+ EHI+LPTG YQ +VM Y +LGF+GA GSTDVTH+ WGMCP+ RS+TGKEG+PT+A++VTVDH R + VT GFTG+TNDK+I+RYD AV IR + +Y ++E+ + +ADGT + KGCYL+VDNGYH+WVTL+ PSKYP D +D AFSK LESVRKDVECFFGI+KGRFRILK +EDIDN+FFTCCILHNMLHS+D S +E+ +WAG+AGLH
Sbjct: 129 ELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLH 426
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 338 bits (868), Expect = 6.320e-112 Identity = 158/259 (61.00%), Postives = 195/259 (75.29%), Query Frame = 3
Query: 156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLH 911
+GN F DI +S +S A+TFH+FCK FA E+++E++YLPTG +VM+ Y ++GF GA+GSTDVTH+ WGMCP+ R +TGKEG PT+AF+VTVDH+GR + VT+GFTGATNDKTI+RYD AV IR + VY +++YKL DG +F KGCYL+VDNGYH+W TL+ PSK P D D FSK LES RKDVEC+FGILKGRFRI K +E IDN+FFTCCILHNMLHSFD E+ +WAGSAGLH
Sbjct: 93 RGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLH 351
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 335 bits (858), Expect = 6.230e-111 Identity = 163/239 (68.20%), Postives = 186/239 (77.82%), Query Frame = 3
Query: 156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHS 851
+GNCFDD+ QLS MS+S+A A FHKFC++ A EMF+EHIYLPTGTY DEVM + +LG TGA GSTDVTH+G MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT GF G TNDKT +RYD+ V IR Y +REYKLRK +GTE TR+GC+LIVDNGY+E +D AFS+ LESVRKDVECFFGILKGRFRILK RE IDNIFFTCCILHNMLH+
Sbjct: 142 KGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 338 bits (868), Expect = 1.070e-110 Identity = 158/259 (61.00%), Postives = 195/259 (75.29%), Query Frame = 3
Query: 156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLH 911
+GN F DI +S +S A+TFH+FCK FA E+++E++YLPTG +VM+ Y ++GF GA+GSTDVTH+ WGMCP+ R +TGKEG PT+AF+VTVDH+GR + VT+GFTGATNDKTI+RYD AV IR + VY +++YKL DG +F KGCYL+VDNGYH+W TL+ PSK P D D FSK LES RKDVEC+FGILKGRFRI K +E IDN+FFTCCILHNMLHSFD E+ +WAGSAGLH
Sbjct: 184 RGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLH 442
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE) HSP 1 Score: 330 bits (845), Expect = 2.700e-108 Identity = 161/260 (61.92%), Postives = 186/260 (71.54%), Query Frame = 3
Query: 156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLHD 914
+GNCFDD+ QLS MS SMA ATFHKFC++FA EMF+EHI+ PT TY DE M + +LG TGA STDVTH+ MCPFTLGRSFTGKEGFPT+A+EVTVDHA RA+ VT GFTGA NDKT++ YD+ V IR Y +R+YKLRKA+GTE TR+GC+ IVDNGYHE DVECFFGILKGRFRILK RE IDNIFFTCCI HNMLH+FDG+ +F+E+ DW GSAG HD
Sbjct: 107 KGNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHE----------------------------DVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNMLHTFDGLDLFEENTDWTGSAGHHD 338
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE) HSP 1 Score: 333 bits (853), Expect = 9.530e-107 Identity = 175/319 (54.86%), Postives = 199/319 (62.38%), Query Frame = 3
Query: 225 HKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNG----------YHE---------------WVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK----------------------------------------------------------------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGLHD 914
HKFC++FA EMF+EHIYL TGTY DEVM + +LG TGA GST+VTH+GW MCPFTLGRSFTGKEGFPT+A EVTVDHAGRA+ VT GFTGATNDKTI+RYD+ V IR Y +REYKLRKA+GTE TR+GC+LIVDNG +H+ WVTL+APSKYP +D AFS+ LESVRKDVECFFGILKGRFRILK RE IDNIFFTCCILHNMLH+FDG+ VF+E+ DW GSAG HD
Sbjct: 246 HKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTGGXFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHD 564
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 318 bits (815), Expect = 3.950e-104 Identity = 152/259 (58.69%), Postives = 186/259 (71.81%), Query Frame = 3
Query: 156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAG 905
+GNCF I Q+S MS FHKFCK+FA+EM++EHIYLP+ D VM Y +LGF+GA+GS DVTH+GW CP+ L RS+TGKEG PT+ ++VTV+HAGRAI VT+GFT +TNDKT V +DA V+ IR + Y ++ + + DGT T KGCYL+VDNGYH+W LM P+KYP +D FSK LESVRKDVECFFGILKG FRI K +E IDN+FFTCCILHNMLH+FDGM E+ W SAG
Sbjct: 108 RGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAG 366
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 315 bits (808), Expect = 3.370e-102 Identity = 153/260 (58.85%), Postives = 186/260 (71.54%), Query Frame = 3
Query: 156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGL 908
+GN F I LS MS FH+FC++FA EM++EHI+LP+ D VM Y KLGF GA+GSTDVTH+GW CP+ GRS+TGKEG PT+ ++VTV+HAGR + VT+GFTG+TNDKTI+ D AV IR +K Y ++ + + K DGT T KGCYLIVDNGYH+W L+ PSKYP D FSK LESVRKDVECFFGILK RFRILK +E +D +FFTCCILHNMLH+ DGM +EDV+W GSA L
Sbjct: 137 RGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAEL 396
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 310 bits (793), Expect = 3.690e-100 Identity = 155/288 (53.82%), Postives = 190/288 (65.97%), Query Frame = 3
Query: 156 QGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYK----------------------------DREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILK-------REDIDNIFFTCCILHNMLHSFDGMSVFKEDVDWAGSAGL 908
+GNCF I Q+S MS FHKFC++FA+EM++E I+LPT D VM Y +LGFTGA+GS DVTH+ W CP+ RS+TGKEGFPT+A++VTVDHAGRAI VT+GFTG+TNDKTIV +D AV+ I +K Y ++ + + DGT T KGCYL+VDNGYH+W L+ PSKYP +D FSK LESVRKDVECFFGILKGRFRILK +E IDN+FFTC ILHNMLH+FDGM E+ +W SAG+
Sbjct: 95 RGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGV 382 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig872.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig872.27.1 >prot_P-littoralis_Contig872.27.1 ID=prot_P-littoralis_Contig872.27.1|Name=mRNA_P-littoralis_Contig872.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp MSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIback to top mRNA from alignment at P-littoralis_Contig872:107459..109783+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig872.27.1 ID=mRNA_P-littoralis_Contig872.27.1|Name=mRNA_P-littoralis_Contig872.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2325bp|location=Sequence derived from alignment at P-littoralis_Contig872:107459..109783+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig872:107459..109783+ >mRNA_P-littoralis_Contig872.27.1 ID=mRNA_P-littoralis_Contig872.27.1|Name=mRNA_P-littoralis_Contig872.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig872:107459..109783+ (Pylaiella littoralis U1_48)back to top |