mRNA_P-littoralis_Contig1201.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1201.7.1
Unique NamemRNA_P-littoralis_Contig1201.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.020e-60
Identity = 98/173 (56.65%), Postives = 124/173 (71.68%), Query Frame = 1
Query:    1 RRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQ 519
            RR+RRSW  Y++P++ DG+FR  FRM + EF +L DMLRP+LERN  MG LRNG +PVE+Q+   LR+LAGG + ++  G+VIA+STAY    RV+ AIN  +ELD  WP+ +         +R RSTNGV+  CVGAMDGLF+RMT+P  R    P SFYSGHKKGFGMNFQ
Sbjct:   47 RRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 3.600e-56
Identity = 92/178 (51.69%), Postives = 123/178 (69.10%), Query Frame = 1
Query:    4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQT-----EFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
            R+RR +  Y +P+L D +F   FRM +D+F VLVD LRP L++N   G LRNGA+PVEYQV  TLRWLAGG + +   GHVIA+STAY   + V+ A+NAC EL+ +WP+ +       F++ A      +   V+ KCVGAMDGLF+RM +P +++  EPN +Y+GHKKGFGMNFQV
Sbjct:   52 RERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATA------ALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 3.130e-54
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 1
Query:    4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQ 519
            R+RRS+  Y  P++ D +FR  FRM + +FM L D+LRP+L+R+  MG LRNGA+PVE+Q+  TLR+LAGG + ++   +VIAKSTAY    RV+ AIN  ++L+ +WP      A  AE +R RSTNGV+ +CVGAMDGLF+R+  P  +    P SFYSGHKK FGMNFQ
Sbjct:   52 RERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQ-AELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.920e-50
Identity = 82/144 (56.94%), Postives = 109/144 (75.69%), Query Frame = 1
Query:   94 MVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQVM 525
            +VLVD LRP L++N+ MG LRNGA+PVE QV  TLRWLAGG + +   GHVIA+STAY   + V+ A+NAC EL+ +WP+ + + A  AE FR+RS+  V+ KCVGA DGLF+RM +P +++  EPN +Y+GHKKGFGMNFQ +
Sbjct:   71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAV 213          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 9.440e-49
Identity = 79/166 (47.59%), Postives = 111/166 (66.87%), Query Frame = 1
Query:    4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKG 501
            R+RR +  + +P+L D +F   FRM +D+F VL+D LRP L +N  MG LR GA+PVEYQ+  TLRWLAGG + +   GHVIA+STAY   + V+ A+NAC EL+ +WP+ + +               V+ KCVGAMDGLF+RM +P +++  EPN +Y+GH+KG
Sbjct:   52 RERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.970e-46
Identity = 74/127 (58.27%), Postives = 96/127 (75.59%), Query Frame = 1
Query:  142 MGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
            MG LRNGA+PVE QV  TLRWLAGG + +   GHVIA+STAY   + V+ A+NAC EL+ +WP+ + + A  AE FR+RS+  V+ KCVGAMD LF+RM +P +++  EPN +Y+GHKKGFGMNFQV
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.770e-25
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINA 303
            R RR +  Y +P+L D +F   FRM +D+F VLVD LRP L++N  MG LRNGA+PVEYQV  TLRWLAGG   +   GHVIA+STAY         I A
Sbjct:   52 RVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMA 151          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.370e-23
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  142 MGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGA 414
            MG LRNGA+PVEYQV  TLRWLAGG + +   GHVIA+STAY   + V+ A+NAC EL+ +WP+ + + A  AE FR+RS+ G   +  G+
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGS 90          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.100e-23
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  241 HVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
            HVIA+STAY   + V+ A+NAC E++ +WP+ + + A  AE FR+RS+  V+ KCVGAMDG F+RM +P +++  EPN   +GHKKGFG NFQ 
Sbjct:    4 HVIARSTAYHETSTVINALNACSEVNCKWPEGE-DAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQA 96          
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.180e-22
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  211 GGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQVM 525
            GG + ++  G V AKSTAY    RV+ AIN  +E D  WP+           +R RSTN V+  CVGAMDGLF+ +  P  R    P  FYSGHKKGFGMNFQ +
Sbjct:   51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGV-YRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE1.020e-6056.65DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE3.600e-5651.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M2_9PHAE3.130e-5452.91DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.920e-5056.94DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE9.440e-4947.59DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE1.970e-4658.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE4.770e-2554.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE1.370e-2352.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYU2_9PHAE2.100e-2352.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCG0_9PHAE3.180e-2248.57DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1201contigP-littoralis_Contig1201:43753..44277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog72019.SARC_10743T0
Model size525
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.72e-23
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.267765-CDS-P-littoralis_Contig1201:43752..442771680789516.267765-CDS-P-littoralis_Contig1201:43752..44277Pylaiella littoralis U1_48CDSP-littoralis_Contig1201 43753..44277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1201.7.1prot_P-littoralis_Contig1201.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1201 43753..44277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1201.7.1

>prot_P-littoralis_Contig1201.7.1 ID=prot_P-littoralis_Contig1201.7.1|Name=mRNA_P-littoralis_Contig1201.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
RRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGR
LRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAIN
ACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPI
SRDTHEPNSFYSGHKKGFGMNFQVM
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mRNA from alignment at P-littoralis_Contig1201:43753..44277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1201.7.1 ID=mRNA_P-littoralis_Contig1201.7.1|Name=mRNA_P-littoralis_Contig1201.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig1201:43753..44277+ (Pylaiella littoralis U1_48)
CGGCGTGACCGGCGAAGTTGGGCTGTGTACAGCGAGCCCATATTGGCAGA CGGGAGCTTTAGACCGAGTTTCCGCATGGGCCACGACGAGTTCATGGTTC TGGTGGATATGCTTCGCCCCGAACTGGAAAGAAACCGTCACATGGGCCGC CTCCGCAATGGCGCTCTCCCAGTAGAGTACCAGGTCGGAAATACTCTGCG ATGGTTGGCGGGCGGTGAAATGCGCGACATAAAGCAAGGCCACGTGATCG CCAAGAGTACGGCGTATCAGACAGCAGCCCGCGTCATGAAGGCCATCAAT GCCTGCAAGGAGTTGGATTTCCGGTGGCCCAAGAACCAGACGGAGTTCGC CAGCATCGCGGAGGGGTTCAGGGACCGCAGCACAAACGGTGTGATGGCCA AGTGCGTGGGAGCCATGGATGGGCTTTTCATCCGCATGACGAGGCCGATC TCTCGCGACACCCACGAGCCCAACTCCTTCTACAGCGGCCACAAGAAGGG TTTCGGGATGAATTTTCAGGTAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1201:43753..44277+

>mRNA_P-littoralis_Contig1201.7.1 ID=mRNA_P-littoralis_Contig1201.7.1|Name=mRNA_P-littoralis_Contig1201.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig1201:43753..44277+ (Pylaiella littoralis U1_48)
CGGCGTGACCGGCGAAGTTGGGCTGTGTACAGCGAGCCCATATTGGCAGA
CGGGAGCTTTAGACCGAGTTTCCGCATGGGCCACGACGAGTTCATGGTTC
TGGTGGATATGCTTCGCCCCGAACTGGAAAGAAACCGTCACATGGGCCGC
CTCCGCAATGGCGCTCTCCCAGTAGAGTACCAGGTCGGAAATACTCTGCG
ATGGTTGGCGGGCGGTGAAATGCGCGACATAAAGCAAGGCCACGTGATCG
CCAAGAGTACGGCGTATCAGACAGCAGCCCGCGTCATGAAGGCCATCAAT
GCCTGCAAGGAGTTGGATTTCCGGTGGCCCAAGAACCAGACGGAGTTCGC
CAGCATCGCGGAGGGGTTCAGGGACCGCAGCACAAACGGTGTGATGGCCA
AGTGCGTGGGAGCCATGGATGGGCTTTTCATCCGCATGACGAGGCCGATC
TCTCGCGACACCCACGAGCCCAACTCCTTCTACAGCGGCCACAAGAAGGG
TTTCGGGATGAATTTTCAGGTAATG
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