mRNA_P-littoralis_Contig1201.7.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 202 bits (515), Expect = 1.020e-60 Identity = 98/173 (56.65%), Postives = 124/173 (71.68%), Query Frame = 1
Query: 1 RRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQ 519
RR+RRSW Y++P++ DG+FR FRM + EF +L DMLRP+LERN MG LRNG +PVE+Q+ LR+LAGG + ++ G+VIA+STAY RV+ AIN +ELD WP+ + +R RSTNGV+ CVGAMDGLF+RMT+P R P SFYSGHKKGFGMNFQ
Sbjct: 47 RRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 190 bits (483), Expect = 3.600e-56 Identity = 92/178 (51.69%), Postives = 123/178 (69.10%), Query Frame = 1
Query: 4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQT-----EFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
R+RR + Y +P+L D +F FRM +D+F VLVD LRP L++N G LRNGA+PVEYQV TLRWLAGG + + GHVIA+STAY + V+ A+NAC EL+ +WP+ + F++ A + V+ KCVGAMDGLF+RM +P +++ EPN +Y+GHKKGFGMNFQV
Sbjct: 52 RERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATA------ALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 186 bits (472), Expect = 3.130e-54 Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 1
Query: 4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQ 519
R+RRS+ Y P++ D +FR FRM + +FM L D+LRP+L+R+ MG LRNGA+PVE+Q+ TLR+LAGG + ++ +VIAKSTAY RV+ AIN ++L+ +WP A AE +R RSTNGV+ +CVGAMDGLF+R+ P + P SFYSGHKK FGMNFQ
Sbjct: 52 RERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQ-AELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 176 bits (446), Expect = 1.920e-50 Identity = 82/144 (56.94%), Postives = 109/144 (75.69%), Query Frame = 1
Query: 94 MVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQVM 525
+VLVD LRP L++N+ MG LRNGA+PVE QV TLRWLAGG + + GHVIA+STAY + V+ A+NAC EL+ +WP+ + + A AE FR+RS+ V+ KCVGA DGLF+RM +P +++ EPN +Y+GHKKGFGMNFQ +
Sbjct: 71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAV 213
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 169 bits (429), Expect = 9.440e-49 Identity = 79/166 (47.59%), Postives = 111/166 (66.87%), Query Frame = 1
Query: 4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKG 501
R+RR + + +P+L D +F FRM +D+F VL+D LRP L +N MG LR GA+PVEYQ+ TLRWLAGG + + GHVIA+STAY + V+ A+NAC EL+ +WP+ + + V+ KCVGAMDGLF+RM +P +++ EPN +Y+GH+KG
Sbjct: 52 RERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.970e-46 Identity = 74/127 (58.27%), Postives = 96/127 (75.59%), Query Frame = 1
Query: 142 MGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
MG LRNGA+PVE QV TLRWLAGG + + GHVIA+STAY + V+ A+NAC EL+ +WP+ + + A AE FR+RS+ V+ KCVGAMD LF+RM +P +++ EPN +Y+GHKKGFGMNFQV
Sbjct: 1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.770e-25 Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINA 303
R RR + Y +P+L D +F FRM +D+F VLVD LRP L++N MG LRNGA+PVEYQV TLRWLAGG + GHVIA+STAY I A
Sbjct: 52 RVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMA 151
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.370e-23 Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 142 MGRLRNGALPVEYQVGNTLRWLAGGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGA 414
MG LRNGA+PVEYQV TLRWLAGG + + GHVIA+STAY + V+ A+NAC EL+ +WP+ + + A AE FR+RS+ G + G+
Sbjct: 1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGS 90
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.100e-23 Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1
Query: 241 HVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
HVIA+STAY + V+ A+NAC E++ +WP+ + + A AE FR+RS+ V+ KCVGAMDG F+RM +P +++ EPN +GHKKGFG NFQ
Sbjct: 4 HVIARSTAYHETSTVINALNACSEVNCKWPEGE-DAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQA 96
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.180e-22 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 211 GGEMRDIKQGHVIAKSTAYQTAARVMKAINACKELDFRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQVM 525
GG + ++ G V AKSTAY RV+ AIN +E D WP+ +R RSTN V+ CVGAMDGLF+ + P R P FYSGHKKGFGMNFQ +
Sbjct: 51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGV-YRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAV 154 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1201.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1201.7.1 >prot_P-littoralis_Contig1201.7.1 ID=prot_P-littoralis_Contig1201.7.1|Name=mRNA_P-littoralis_Contig1201.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp RRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNRHMGRback to top mRNA from alignment at P-littoralis_Contig1201:43753..44277+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1201.7.1 ID=mRNA_P-littoralis_Contig1201.7.1|Name=mRNA_P-littoralis_Contig1201.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig1201:43753..44277+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1201:43753..44277+ >mRNA_P-littoralis_Contig1201.7.1 ID=mRNA_P-littoralis_Contig1201.7.1|Name=mRNA_P-littoralis_Contig1201.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig1201:43753..44277+ (Pylaiella littoralis U1_48)back to top |