mRNA_P-littoralis_Contig871.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig871.8.1
Unique NamemRNA_P-littoralis_Contig871.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.410e-49
Identity = 78/97 (80.41%), Postives = 82/97 (84.54%), Query Frame = 1
Query:   28 QLDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            +LDTR VLPWW+ TGRKMF YLAPVAQQV GNQA AAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KDIP IA KDIR CLP RF
Sbjct:   99 ELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRF 195          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.350e-48
Identity = 73/97 (75.26%), Postives = 80/97 (82.47%), Query Frame = 1
Query:   28 QLDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            +LDTR +LPWW+QTGRK F YLAPVAQQVFGNQA AAQVERDFS C NLL  NRSR+DTYWVEM+MFL  N++HIP  KDIP IA KDI  CLP RF
Sbjct:   24 ELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRF 120          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 9.720e-45
Identity = 77/97 (79.38%), Postives = 81/97 (83.51%), Query Frame = 1
Query:   28 QLDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            +LDTR VLPWW+ TGRKMF  LAPVAQQV GNQA AAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KDIP IA KDIR CLP RF
Sbjct:  497 ELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRF 593          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.040e-40
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   28 QLDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            +LD R VLPWW++TG+ +F +LAPVAQQVFGNQAA +QVERDFS  G LL  NRSR+DTYWVE++MFL  N+ HIP LK IP +A K+IR CLP RF
Sbjct:  186 ELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARF 282          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.260e-38
Identity = 65/80 (81.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query:   79 MFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            MF YLAPVAQQV GNQA AAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KDIP IA KDIR CLP RF
Sbjct:    1 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRF 80          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.930e-29
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   61 QQTGRKM--FAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            QQ  +++  F  L   A +V GNQA AAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK IPA KDIP IA KDIR CLP RF
Sbjct:  209 QQVSQELERFQALYMTAGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKCIPAFKDIPMIAAKDIRTCLPPRF 296          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.900e-28
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   25 SQLDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            + L    VL +W  TGR  F  L  VAQQ FG+Q +AA VERDFS CG  LV NRSR++ YWVEM+MFL  N+K IP   +IP I  KDIR+CLP +F
Sbjct:  725 NDLHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKF 822          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.130e-27
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   31 LDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            L    VL +W + G++MF  L  VAQQ FG+QA+AAQ+ERDFS CG    GNRSR + YW+EM+M LK NY+ IP  KDIP I  KDIR+CLP ++
Sbjct:  487 LPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRKCLPAKY 582          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.490e-26
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   25 SQLDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            S L  R VL +W+Q+GR  F  L  VAQQ FG+QA AAQ+ERDFS  G L   NR+R+D YWVEM++FLK N++ IP   DIP +  K IR CLP +F
Sbjct:  380 SDLQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKF 477          
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.560e-26
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   22 LSQLDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVERDFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRRCLPTRF 318
            ++      VL +W +TG+  F  L  VAQQ FGNQA+AA VERDFS CG  +V NRSR+D YWVEM+MFLK N+     + +IP+I  KDIR+CLP +F
Sbjct:  382 MTSCSRSEVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRI-NIPQIDPKDIRKCLPAKF 479          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig871.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JVT2_9PHAE1.410e-4980.41Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KSA7_9PHAE1.350e-4875.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE9.720e-4579.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE6.040e-4067.01Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE1.260e-3881.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBM2_9PHAE1.930e-2968.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE9.900e-2856.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE1.130e-2756.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE3.490e-2655.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE6.560e-2653.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig871contigP-littoralis_Contig871:22719..23036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15711395
Model size318
Max annot lvl400682.PAC_15711395|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000828
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size318
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791751.5542545-CDS-P-littoralis_Contig871:22718..230361680791751.5542545-CDS-P-littoralis_Contig871:22718..23036Pylaiella littoralis U1_48CDSP-littoralis_Contig871 22719..23036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig871.8.1prot_P-littoralis_Contig871.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig871 22719..23036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig871.8.1

>prot_P-littoralis_Contig871.8.1 ID=prot_P-littoralis_Contig871.8.1|Name=mRNA_P-littoralis_Contig871.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MSASVCVLSQLDTRHVLPWWQQTGRKMFAYLAPVAQQVFGNQAAAAQVER
DFSACGNLLVGNRSRIDTYWVEMLMFLKVNYKHIPALKDIPKIADKDIRR
CLPTRF
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mRNA from alignment at P-littoralis_Contig871:22719..23036-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig871.8.1 ID=mRNA_P-littoralis_Contig871.8.1|Name=mRNA_P-littoralis_Contig871.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig871:22719..23036- (Pylaiella littoralis U1_48)
ATGTCCGCGTCTGTGTGCGTTCTTTCGCAGTTGGACACTCGGCACGTACT GCCTTGGTGGCAACAGACCGGCCGGAAGATGTTCGCCTACCTCGCACCGG TGGCGCAGCAGGTGTTTGGAAACCAGGCCGCTGCGGCGCAGGTTGAGCGC GACTTCAGTGCATGCGGGAATCTGCTCGTGGGCAACAGAAGCCGCATCGA CACCTACTGGGTGGAGATGTTGATGTTCCTCAAGGTCAACTACAAGCACA TCCCCGCGTTGAAGGACATTCCCAAGATCGCCGATAAGGACATCCGCAGG TGTCTGCCGACACGGTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig871:22719..23036-

>mRNA_P-littoralis_Contig871.8.1 ID=mRNA_P-littoralis_Contig871.8.1|Name=mRNA_P-littoralis_Contig871.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig871:22719..23036- (Pylaiella littoralis U1_48)
ATGTCCGCGTCTGTGTGCGTTCTTTCGCAGTTGGACACTCGGCACGTACT
GCCTTGGTGGCAACAGACCGGCCGGAAGATGTTCGCCTACCTCGCACCGG
TGGCGCAGCAGGTGTTTGGAAACCAGGCCGCTGCGGCGCAGGTTGAGCGC
GACTTCAGTGCATGCGGGAATCTGCTCGTGGGCAACAGAAGCCGCATCGA
CACCTACTGGGTGGAGATGTTGATGTTCCTCAAGGTCAACTACAAGCACA
TCCCCGCGTTGAAGGACATTCCCAAGATCGCCGATAAGGACATCCGCAGG
TGTCTGCCGACACGGTTC
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