mRNA_P-littoralis_Contig120.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.65.1
Unique NamemRNA_P-littoralis_Contig120.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.610e-21
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    7 NGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKLQQAISNA 183
            NG+ ++S QP+AR  YV  MGGVDVADQRL AHAH H+PMT+FWRRVFDQKL  A+SNA
Sbjct:  281 NGEKVSSSQPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNA 339          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.580e-21
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    7 NGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKLQQAISN 180
            NG+ ++S+QP+AR +YV  MGGVDVADQRL +HAH H+PMT+FWRRVFDQK  QA+SN
Sbjct:  253 NGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSN 310          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.110e-20
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    7 NGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKLQQAISNA 183
            NG+ ++S QP+AR ++V  MGGVDVADQ L AHAH H+PMT+FWRRVFDQK  QA+SNA
Sbjct:  297 NGEKVSSSQPLARKEHVKNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSNA 355          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.670e-20
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    7 NGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKLQQAISNA 183
            NG+ ++S QP+AR +YV  MGGVDVADQRL AHA  H+PMT+FWRRVF QK  QA+SNA
Sbjct:  303 NGEKVSSSQPLARKEYVKNMGGVDVADQRLGAHARTHRPMTFFWRRVFAQKFSQAVSNA 361          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.080e-19
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    7 NGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKLQQAISNA 183
            NG  + S QP+AR +YV  +GGVDVADQRL+AHAH H+PMT+FW RV DQK  QA+SNA
Sbjct:  174 NGDKVPSHQPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQKFAQAVSNA 232          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5K972_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K972_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.320e-18
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    7 NGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKLQQAISNA 183
            +G  ++S QP+AR DYV  MGGVDVADQRL  H H HK  T+FWRRVFDQK  QAISNA
Sbjct:  302 DGNSVSSLQPLARLDYVVRMGGVDVADQRLMTHQHGHKQKTFFWRRVFDQKFAQAISNA 360          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5JTJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.330e-16
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    7 NGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKL 162
            NG+ ++S QP+AR +YV  +GG++VADQRL AHAH H+PMT+FWR VFDQK 
Sbjct:  395 NGEKVSSSQPLARKEYVKNIGGLEVADQRLGAHAHTHRPMTFFWRSVFDQKF 446          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.090e-15
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 GQNGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKLQQAISNA 183
            G+NG+ L  +QP  R DYV  M GVD+ADQ+  +H HDHK  T FWRRV+D KL+QA++NA
Sbjct:  597 GRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNA 657          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.820e-15
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 GQNGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVFDQKLQQAISNA 183
            G+NG+ L  +QP  R DY   M GVD+ADQ+  +H HDHK  T FWRRV+D KL+QA++NA
Sbjct:  273 GRNGEPLDLQQPWTRMDYFLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNA 333          
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.090e-12
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 1
Query:    7 NGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYF 135
            NG+ ++S+QP+AR +YV  MGGVDVADQRL+AHAH H+PMT+F
Sbjct:  215 NGEKVSSQQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JDZ7_9PHAE1.610e-2171.19DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KQZ5_9PHAE2.580e-2168.97DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JC56_9PHAE1.110e-2067.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHH7_9PHAE6.670e-2067.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGW0_9PHAE1.080e-1966.10DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K972_9PHAE1.320e-1867.80DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5JTJ5_9PHAE5.330e-1663.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEE0_9PHAE1.090e-1557.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JER6_9PHAE6.820e-1555.74DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KG44_9PHAE3.090e-1267.44DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:387326..387510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.4659226-CDS-P-littoralis_Contig120:387325..3875081680789515.4659226-CDS-P-littoralis_Contig120:387325..387508Pylaiella littoralis U1_48CDSP-littoralis_Contig120 387326..387508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.65.1prot_P-littoralis_Contig120.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 387326..387508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.65.1

>prot_P-littoralis_Contig120.65.1 ID=prot_P-littoralis_Contig120.65.1|Name=mRNA_P-littoralis_Contig120.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
GQNGQVLTSKQPVARFDYVGGMGGVDVADQRLNAHAHDHKPMTYFWRRVF
DQKLQQAISNA
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mRNA from alignment at P-littoralis_Contig120:387326..387510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.65.1 ID=mRNA_P-littoralis_Contig120.65.1|Name=mRNA_P-littoralis_Contig120.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=185bp|location=Sequence derived from alignment at P-littoralis_Contig120:387326..387510+ (Pylaiella littoralis U1_48)
GGCCAAAACGGGCAGGTGCTAACGAGCAAGCAGCCGGTTGCTCGTTTCGA CTACGTgGGGGGCATGGGTGGTGTAGACGTCGCCGATCAGCGCTTAAACG CGCACGCCCACGACCACAAGCCCATGACGTACTTCTGGCGGCGTGTGTTC GACCAGAAATTGCAACAAGCCATCAGCAACGCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:387326..387510+

>mRNA_P-littoralis_Contig120.65.1 ID=mRNA_P-littoralis_Contig120.65.1|Name=mRNA_P-littoralis_Contig120.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig120:387326..387510+ (Pylaiella littoralis U1_48)
GGCCAAAACGGGCAGGTGCTAACGAGCAAGCAGCCGGTTGCTCGTTTCGA
CTACGTgGGGGGCATGGGTGGTGTAGACGTCGCCGATCAGCGCTTAAACG
CGCACGCCCACGACCACAAGCCCATGACGTACTTCTGGCGGCGTGTGTTC
GACCAGAAATTGCAACAAGCCATCAGCAACGCG
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