mRNA_P-littoralis_Contig85.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.52.1
Unique NamemRNA_P-littoralis_Contig85.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: M5FBY9_9HYPH (Pyridoxal-dependent decarboxylase n=1 Tax=Mesorhizobium metallidurans STM 2683 TaxID=1297569 RepID=M5FBY9_9HYPH)

HSP 1 Score: 75.9 bits (185), Expect = 2.290e-12
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  414 LDAAGYDREHRYIHVDSAHSGFVLPFLEDVDPGICVDFRRQGLSSCSASLQKALGVSAPASVFLIKKGIAN--ATFYEYIKMSDITLSCSRNGHLAFEGW 707
            L+ AG  R  RY+HVD A +G V+PFLE+V+ GI   F+ + + S SAS  K +G   P  + + ++   N  A+   Y++ +D TL  SRNGH +   W
Sbjct:  162 LEQAGVSRNRRYLHVDGALNGMVIPFLENVESGIIPSFKHE-IDSISASGHKMIGTPMPCGILVARRNHVNRIASSISYLRSNDTTLMGSRNGHASIAIW 260          
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A4Q3G922_9HYPH (Histidine decarboxylase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4Q3G922_9HYPH)

HSP 1 Score: 69.3 bits (168), Expect = 4.790e-10
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 3
Query:  408 QKLDAAGYDREHRYIHVDSAHSGFVLPFLEDVDPGICVDFRRQGLSSCSASLQKALGVSAPASVFLIKKGIAN--ATFYEYIKMSDITLSCSRNGHLAFEGWAML 716
            + LD  G+ ++ R++H+D A +G VLPFL+ V   +  +FR   +SS S S  K +G + P  V + ++      A+   Y++ +D TL  SRNGH     WA L
Sbjct:  201 EALDDCGFPQQRRFVHIDGALNGMVLPFLDGVPERLQPNFRH-AISSISTSGHKMIGTTMPCGVLVTRRHYVERVASAVAYLRSNDTTLMGSRNGHAVLALWARL 304          
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: UPI001F1F444D (histidine decarboxylase n=1 Tax=Acidocella facilis TaxID=525 RepID=UPI001F1F444D)

HSP 1 Score: 68.6 bits (166), Expect = 8.760e-10
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 3
Query:  414 LDAAGYDREHRYIHVDSAHSGFVLPFLEDVDPGICVDFRRQGLSSCSASLQKALGVSAPASVFLIKKGIAN--ATFYEYIKMSDITLSCSRNGHLAFEGW 707
            LD  GYD   RYIHVD A  G ++PF+    P I  +F+   + S S S  K +GV  P  V ++++   +   +   Y+K +D TL  SRNGH     W
Sbjct:  195 LDELGYDATRRYIHVDGALDGMIIPFVPSASPEISPNFKLP-IDSISTSGHKMVGVPMPCGVLVVRRCYIDKITSAISYLKSNDTTLMGSRNGHATLAIW 293          
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A6H9TML6_9BURK (Histidine decarboxylase n=2 Tax=Burkholderia latens TaxID=488446 RepID=A0A6H9TML6_9BURK)

HSP 1 Score: 63.5 bits (153), Expect = 4.280e-8
Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 GSPFDNGSDVSNTLDTEANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNI 396
            G PF  G+   ++ + E  ++   A LF A  DD  GYV  G +E N   +  A E           + H+S+ +A++++G  ++ V+++  GEMD D L R  A  RD+  +   V+   GTTM E  D++
Sbjct:   50 GDPFQAGTYRVDSRELEREVVKFFASLFNAGDDDYWGYVTNGGTEGNIYGLYIARELHPDGVLYCTADTHYSVSKAVRLLGLTVVTVRSQPHGEMDYDDL-RSKA--RDRLHNPAIVVANLGTTMKEGKDDV 178          
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: UPI0008295CFC (pyridoxal-dependent decarboxylase n=1 Tax=Nocardia harenae TaxID=358707 RepID=UPI0008295CFC)

HSP 1 Score: 62.8 bits (151), Expect = 7.950e-8
Identity = 40/125 (32.00%), Postives = 60/125 (48.00%), Query Frame = 1
Query:   49 EANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNIDAAIKSSMP 423
            E  ++   A L    PD+  GY+A   SE+N   +   C    +A        H+SI++A +++ REL+ V A+  G MD  AL    A CR        V+    TTM  A D++DA I ++ P
Sbjct:   88 ECAVVDAVARLANGAPDETYGYIAAAGSEANLFGLDRGCTALPAARIYCSSAAHYSIRKAARLMRRELVVVDADPTGRMDPAALA---ATCRRDAGRGAIVVATLSTTMTGAVDDVDAIIAAASP 209          
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: UPI001E2CD027 (pyridoxal-dependent decarboxylase n=1 Tax=Nocardia asteroides TaxID=1824 RepID=UPI001E2CD027)

HSP 1 Score: 59.3 bits (142), Expect = 1.180e-6
Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 1
Query:   49 EANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNIDAAIKSS 417
            E  ++   A L    PD+  GY+A   SE+N   +   C     A        H+SI++A +++ REL+ V A+  G MD  AL    A CR        V+    TTM  A D++DA + ++
Sbjct:   87 ECAVVDAVARLANGAPDETYGYIAASGSEANLFGLDRGCVALPDAKIYCSGAAHYSIRKAARLMRRELVVVAADATGRMDPAALA---AACRPGAGRGAIVVATLSTTMTGAIDDVDAIVAAA 206          
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A4V0HX30_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0HX30_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.800e-6
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 1
Query:    1 GSPFDNGSDVSNTLDTEANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNI 396
            G PF   S   +T + E  ++   A    A  +DV GYV +GS+E N   +  A E F  A      + H+S+ +A++++G E   V++     +D+D L   +   R QG   V V  V GTTM  A D++
Sbjct:   53 GDPFRTRSTGHHTHELEREVVTQFAGWASAPENDVWGYVTSGSTEGNLHGLFLAREMFPDAVVYHSADSHYSVSKAVRLLGVEARVVRSRPDARIDLDHLADEVR--RHQGRPAVVVANV-GTTMKAAIDDL 181          
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A8J3HSV1_9ACTN (Histidine decarboxylase n=2 Tax=unclassified Catellatospora TaxID=2645785 RepID=A0A8J3HSV1_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 2.370e-5
Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 1
Query:   13 DNGSDVSNTLDTEANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNIDA 402
            D G  V++T + E  ++    DLF A P D  GYV  G+SE    A+  A + +           H+S+ +A + +  +L+ V+ +  G MD+  L   LA  R++      ++   GTTM EA D++ A
Sbjct:   68 DPGHGVNHTKELEREVVTTIGDLFQA-PRDCWGYVTGGASEGTEHALDEAWQRYPDIVVYTSAAAHYSVAKAARKLKLQLVIVRTDVTGRMDVADLAGELARRRER---PAMIVATAGTTMTEAIDDVAA 193          
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A1H4ECY2_9FLAO (L-histidine carboxy-lyase (Histamine-forming) n=2 Tax=Flavobacterium TaxID=237 RepID=A0A1H4ECY2_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 5.880e-5
Identity = 37/124 (29.84%), Postives = 59/124 (47.58%), Query Frame = 1
Query:   58 LMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETF---------SSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEM-DIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNID 399
            L ++  D+F A PD  DGY+A G +E+N  AI W    +         S    I  E+ H+SI +A  ++  + L +  +    + D+ AL   +   +++G     V+   GTTM  A DN D
Sbjct:   90 LNVLAVDIFKAQPDSFDGYIAPGGTEANIQAI-WIYRNYFMYKQNAKLSEIAIIASEDTHYSIPKAANLLMLDWLNIPVDFDTRLIDVFALETSIINAKERGKKYFIVVSNMGTTMFGAVDNPD 212          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
M5FBY9_9HYPH2.290e-1239.00Pyridoxal-dependent decarboxylase n=1 Tax=Mesorhiz... [more]
A0A4Q3G922_9HYPH4.790e-1035.24Histidine decarboxylase n=1 Tax=Hyphomicrobiales b... [more]
UPI001F1F444D8.760e-1037.00histidine decarboxylase n=1 Tax=Acidocella facilis... [more]
A0A6H9TML6_9BURK4.280e-831.06Histidine decarboxylase n=2 Tax=Burkholderia laten... [more]
UPI0008295CFC7.950e-832.00pyridoxal-dependent decarboxylase n=1 Tax=Nocardia... [more]
UPI001E2CD0271.180e-630.89pyridoxal-dependent decarboxylase n=1 Tax=Nocardia... [more]
A0A4V0HX30_9BACT2.800e-631.82Uncharacterized protein n=1 Tax=Gemmataceae bacter... [more]
A0A8J3HSV1_9ACTN2.370e-530.00Histidine decarboxylase n=2 Tax=unclassified Catel... [more]
A0A1H4ECY2_9FLAO5.880e-529.84L-histidine carboxy-lyase (Histamine-forming) n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:242702..243420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1249997.JHZW01000002_gene395
Preferred namehdc
PFAMsPyridoxal_deC
Model size719
Max annot lvl976|Bacteroidetes
KEGG rclassRC00299
KEGG koko:K01590
KEGG ReactionR01167
KEGG Pathwayko00340,ko01100,ko01110,map00340,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-10
EggNOG OGsCOG0076@1|root,COG0076@2|Bacteria,4NGRW@976|Bacteroidetes,1HYSV@117743|Flavobacteriia
EC4.1.1.22
DescriptionCytochrome D ubiquinol oxidase subunit I
Cds size483
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791716.7928715-UTR-P-littoralis_Contig85:242701..2427611680791716.7928715-UTR-P-littoralis_Contig85:242701..242761Pylaiella littoralis U1_48UTRP-littoralis_Contig85 242702..242761 +
1680791716.8243036-UTR-P-littoralis_Contig85:243244..2434201680791716.8243036-UTR-P-littoralis_Contig85:243244..243420Pylaiella littoralis U1_48UTRP-littoralis_Contig85 243245..243420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791716.809849-CDS-P-littoralis_Contig85:242761..2432441680791716.809849-CDS-P-littoralis_Contig85:242761..243244Pylaiella littoralis U1_48CDSP-littoralis_Contig85 242762..243244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.52.1prot_P-littoralis_Contig85.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 242762..243244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.52.1

>prot_P-littoralis_Contig85.52.1 ID=prot_P-littoralis_Contig85.52.1|Name=mRNA_P-littoralis_Contig85.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
MMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMH
FSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLV
CGTTMGEAHDNIDAAIKSSMPRAMIANTVTSTLTVPTAGLSCRFSKTLIR
AFVWTFGVRG*
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mRNA from alignment at P-littoralis_Contig85:242702..243420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.52.1 ID=mRNA_P-littoralis_Contig85.52.1|Name=mRNA_P-littoralis_Contig85.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=719bp|location=Sequence derived from alignment at P-littoralis_Contig85:242702..243420+ (Pylaiella littoralis U1_48)
GGCAGTCCTTTTGACAATGGGTCAGACGTGAGCAATACCTTGGACACCGA AGCGAACCTCATGATGATGTGTGCCGACTTGTTTGGCGCGGACCCGGATG ACGTGGACGGGTACGTGGCGACGGGCAGCTCCGAGAGCAACGCGTGCGCC ATCAGGTGGGCGTGTGAAACGTTTTCGAGCGCTCCGTTTATTGGAGGAGA AAACATGCATTTCTCGATCAAGCGAGCGATAAAGGTCGTGGGTCGTGAGC TTCTTCAGGTGAAGGCGGAGAAGGGCGGTGAAATGGACATAGACGCCCTG GGGCGCGGCCTTGCCGGGTGCAGGGACCAGGGGGTGAGCGAGGTGTGCGT GATGTTGGTGTGCGGCACGACAATGGGCGAAGCGCACGACAACATTGACG CGGCCATCAAAAGCTCGATGCCGCGGGCTATGATCGCGAACACCGTTACA TCCACGTTGACAGTGCCCACAGCGGGTTTGTCCTGCCGTTTCTCGAAGAC GTTGATCCGGGCATTTGTGTGGACTTTCGGCGTCAGGGGCTGAGCAGCTG CTCGGCTTCTCTGCAGAAGGCCTTGGGAGTGTCTGCCCCCGCTTCGGTGT TTCTAATCAAGAAGGGCATTGCAAACGCGACGTTCTACGAGTACATTAAG ATGTCGGACATCACTCTCTCCTGCAGCCGGAACGGCCATCTCGCTTTCGA AGGGTGGGCCATGCTCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig85:242702..243420+

>mRNA_P-littoralis_Contig85.52.1 ID=mRNA_P-littoralis_Contig85.52.1|Name=mRNA_P-littoralis_Contig85.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig85:242702..243420+ (Pylaiella littoralis U1_48)
ATGATGATGTGTGCCGACTTGTTTGGCGCGGACCCGGATGACGTGGACGG
GTACGTGGCGACGGGCAGCTCCGAGAGCAACGCGTGCGCCATCAGGTGGG
CGTGTGAAACGTTTTCGAGCGCTCCGTTTATTGGAGGAGAAAACATGCAT
TTCTCGATCAAGCGAGCGATAAAGGTCGTGGGTCGTGAGCTTCTTCAGGT
GAAGGCGGAGAAGGGCGGTGAAATGGACATAGACGCCCTGGGGCGCGGCC
TTGCCGGGTGCAGGGACCAGGGGGTGAGCGAGGTGTGCGTGATGTTGGTG
TGCGGCACGACAATGGGCGAAGCGCACGACAACATTGACGCGGCCATCAA
AAGCTCGATGCCGCGGGCTATGATCGCGAACACCGTTACATCCACGTTGA
CAGTGCCCACAGCGGGTTTGTCCTGCCGTTTCTCGAAGACGTTGATCCGG
GCATTTGTGTGGACTTTCGGCGTCAGGGGCTGA
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