mRNA_P-littoralis_Contig85.14.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI) HSP 1 Score: 177 bits (450), Expect = 4.640e-50 Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1
Query: 715 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 978
MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFE LYPSLWHCFVGRNFGC+VTHEHTKFVYLYIGQ+GVCLFSTA
Sbjct: 1 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA) HSP 1 Score: 151 bits (381), Expect = 3.390e-40 Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 1
Query: 715 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 978
MSARPVIKTSTM DMQEAAIQVAQDAI+DNNLEK+IA+A+K FE +YPS+WHCFVGRNFG +VTHE +KF+Y YIGQ+GVCLFSTA
Sbjct: 1 MSARPVIKTSTMPADMQEAAIQVAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.110e-29 Identity = 56/92 (60.87%), Postives = 73/92 (79.35%), Query Frame = 1
Query: 703 GGGTMSARP-VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 975
G TM+ R V+K S M +MQ+AA+Q+AQDAIR++ E++IA+A+K FES+Y + WHCFVGRNFGCYVTH+ FVY YIGQLG+CLF+T
Sbjct: 31 GSATMAPRGIVVKASRMEQEMQDAAVQIAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.690e-29 Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 1
Query: 703 GGGTMSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 978
G M+ARPVIK S+M PDMQE AIQ AQDAI N E++IA A++ E+++P+ WH VGRNFGC+VTHE +KF+Y YIGQ+GVC+F+TA
Sbjct: 25 GPEKMAARPVIKHSSMTPDMQEMAIQCAQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.070e-23 Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 691 LPWLGG----GTMSARP-------VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 975
L W+ G TMS + ++K + M M E AI VA AI+ N EK+ A+A+KA E+L+P +WHCFVGR FGCYVTHE +KF+Y Y+GQLGVCLFS+
Sbjct: 71 LAWVSGRAPPATMSDKKTFKLNGAIVKLNQMETVMAERAIDVALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: K3WKC4_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKC4_GLOUD) HSP 1 Score: 96.7 bits (239), Expect = 1.470e-20 Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 718 SARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPS-LWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 978
+ +PV+KTSTM PD+Q+ I VAQ A+ E+ IA VK FE Y LWHC VGRN CYVTHE +KF+Y YIGQ+ V LF+TA
Sbjct: 3 NVKPVVKTSTMDPDLQDEVILVAQHAMDTEIDEQQIAAKVKQHFEQKYHGMLWHCCVGRNVACYVTHEQSKFLYFYIGQMAVVLFATA 90
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: A0A0R3WWJ5_HYDTA (Dynein light chain n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WWJ5_HYDTA) HSP 1 Score: 96.7 bits (239), Expect = 2.610e-20 Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 724 RPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 975
+ V+K + MA DMQ+ A+ AQDA+ N+EKDIA +K F+ LY WHC VGRNFG YVTHE F+Y Y+GQ+ + LF +
Sbjct: 26 KAVVKNADMAEDMQQRAVDCAQDAMNKYNVEKDIAAHIKKEFDRLYSPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 109
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: U4LB13_PYROM (Dynein light chain n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LB13_PYROM) HSP 1 Score: 96.3 bits (238), Expect = 3.090e-20 Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1
Query: 706 GGTMSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFSTA 978
G + + +K+ MA DM AA +VA+ A+++NN+EKDIA +K F++ Y + WHC VGRNFG +VTHE F+Y Y+G L V L+ TA
Sbjct: 15 GDSAELKTTVKSVDMAEDMAAAAQEVAKKAMKENNVEKDIAQMIKKEFDAKYGNTWHCIVGRNFGSFVTHETKHFIYFYVGNLAVLLYKTA 105
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: A0A0R3WU97_HYDTA (Dynein light chain n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WU97_HYDTA) HSP 1 Score: 94.7 bits (234), Expect = 7.610e-20 Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 724 RPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 975
+ VIK + M +MQ+ A+ AQDA+ N+EKDIA +K F+ LY WHC VGRNFG YVTHE F+Y Y+GQ+ + LF +
Sbjct: 9 KAVIKNADMVDEMQQRAVDCAQDAMEKFNIEKDIAAHIKKEFDKLYSPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKS 92
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Match: A0A0R3WYJ9_HYDTA (Dynein light chain n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WYJ9_HYDTA) HSP 1 Score: 94.4 bits (233), Expect = 1.040e-19 Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 718 SARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPSLWHCFVGRNFGCYVTHEHTKFVYLYIGQLGVCLFST 975
S + VIK + M+ +MQ+ A+ AQDA+ N+EKDIA +K F+ +Y WHC VGRNFG YVTHE F+Y Y+GQ+ + LF +
Sbjct: 7 SQKAVIKNADMSEEMQQKAVDCAQDAMEKFNIEKDIAAHIKKEFDRMYNPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 92 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig85.14.1 >prot_P-littoralis_Contig85.14.1 ID=prot_P-littoralis_Contig85.14.1|Name=mRNA_P-littoralis_Contig85.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFESLYPback to top mRNA from alignment at P-littoralis_Contig85:85213..88908- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig85.14.1 ID=mRNA_P-littoralis_Contig85.14.1|Name=mRNA_P-littoralis_Contig85.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3696bp|location=Sequence derived from alignment at P-littoralis_Contig85:85213..88908- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig85:85213..88908- >mRNA_P-littoralis_Contig85.14.1 ID=mRNA_P-littoralis_Contig85.14.1|Name=mRNA_P-littoralis_Contig85.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig85:85213..88908- (Pylaiella littoralis U1_48)back to top |