mRNA_P-littoralis_Contig85.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.53.1
Unique NamemRNA_P-littoralis_Contig85.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig85.53.1 vs. uniprot
Match: A0A6H5J6J5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6J5_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 1.310e-107
Identity = 268/370 (72.43%), Postives = 300/370 (81.08%), Query Frame = 3 
Query:  228 SATEATPPT--------TSGFGATKGNKAVSKRRHVIGLHSKNFVQKVQCMRPMDWRKVLLELEAAEEASDADPKTCGITTYMYASCISRMAKARRWKEALGILERMRARGLKPSSYCMXXXXXXXXXXXXXXXXXXXXXLRRKDLGEKAG-DDXXXXXXXXXXXXXXXXXXXXXXXEEMKAGGNTPHPYXXXXXXXXXXXXXXXXXXXXXXXXXRQARVHVDGFIDAFCVKTTIAALAKSGKWKQALKIYVEMVEVLPRNRDGIAGANLGINALREASLACGRVGNWKASLKLLDEMRATAITPESGCYEAAMKSCVRNKKWERAISLMDEMVDVYGVQPELGAXNVAISAAGSASLWPKAVKMLGQAR 1310
            SA  +T PT        T+G  A +    V KR ++ GLHSKNFVQKVQCMRP DWR VL EL+ AEEASDA P    ITT+MYASCISRMAKARRW+EAL IL+RMRARGL+P+SYC+   XXXXXXXXXXXXXXXXXX RR+DLGE +  D+XXXXXXXXXXXXXXXXXXXXXXX E+K GG TPHP+XXXXXXXXXXXXXXXXXXXXXXXX RQARV  DGFID +CVKTTI ALAKSGKWKQALKIY+EM++VLP N D    ANL ++ALR+AS ACGR G+WKASLKLLDEMRA AITPESGCY+AAM+SCVRN++WERA  L+DEM   YG+ P+L    VAISAAG ASLWPKA KML Q R
Sbjct:    3 SAGTSTSPTPTQPLSEDTAGSSAAR-RLGVIKRANIAGLHSKNFVQKVQCMRPTDWRGVLRELQIAEEASDAQPSESRITTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSAXXXXXXXXXXXXXXXXXXXRREDLGEGSPVDEXXXXXXXXXXXXXXXXXXXXXXXXELKVGGKTPHPFXXXXXXXXXXXXXXXXXXXXXXXXMRQARVRTDGFIDVYCVKTTITALAKSGKWKQALKIYLEMLDVLPANSDS-PEANLNLDALRDASFACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNRQWERATCLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMR 370
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J6J5_9PHAE1.310e-10772.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:255370..258758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTR1
Model size3389
Max annot lvl2880.D7FTR1|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.02e-99
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-14_001160.1
Descriptionendonuclease activity
Cds size2592
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.096173-UTR-P-littoralis_Contig85:255369..2553921680791714.096173-UTR-P-littoralis_Contig85:255369..255392Pylaiella littoralis U1_48UTRP-littoralis_Contig85 255370..255392 +
1680791714.1260047-UTR-P-littoralis_Contig85:257984..2587581680791714.1260047-UTR-P-littoralis_Contig85:257984..258758Pylaiella littoralis U1_48UTRP-littoralis_Contig85 257985..258758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.1110208-CDS-P-littoralis_Contig85:255392..2579841680791714.1110208-CDS-P-littoralis_Contig85:255392..257984Pylaiella littoralis U1_48CDSP-littoralis_Contig85 255393..257984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.53.1prot_P-littoralis_Contig85.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 255393..257984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.53.1

>prot_P-littoralis_Contig85.53.1 ID=prot_P-littoralis_Contig85.53.1|Name=mRNA_P-littoralis_Contig85.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=864bp
MAFVTSPATHSEYPWLPNLPQWRSAAAVRAHVTVRGARQLVAAAPAAATA
SVATSTTTTPTAASPTPLSATEATPPTTSGFGATKGNKAVSKRRHVIGLH
SKNFVQKVQCMRPMDWRKVLLELEAAEEASDADPKTCGITTYMYASCISR
MAKARRWKEALGILERMRARGLKPSSYCMSSAIKACGAKKQWKEALKLLE
LRRKDLGEKAGDDYCMSAAIYACGNSGETEKALELLEEMKAGGNTPHPYA
YTAAISSCGNSMLDDKATQLFEEMRQARVHVDGFIDAFCVKTTIAALAKS
GKWKQALKIYVEMVEVLPRNRDGIAGANLGINALREASLACGRVGNWKAS
LKLLDEMRATAITPESGCYEAAMKSCVRNKKWERAISLMDEMVDVYGVQP
ELGAYNVAISAAGSASLWPKAVKMLGQARHYGLQPDPTTYSAVVTACGKA
GAWQESLRLLEDMREVGVEPNCYNFRAAMTACGKAGQWQRAVGLLGEMKG
GGLELDVSAYNTAIMACIGSVRGAEASALLGEMRAAGVEPSADTYRLVII
ACGKSGMWEQSTAHLREMVEQGLSPNSLIYASIITGFGHAKEWDNALEFL
AGMPAAGVEPNLHHFNAALQACDWSGQGEAAARLLRGMEEEYGVRPDWNS
YAFAVSACAFGGQDELALELLGETKKLSASGAPPRSRLYESALRACGNSP
GGSQWRQAKELLDEARGTGVALSVRAYNNAMKAAAAAGEVDEVVARLAEV
REAGGGLKPDCVSFSWALPALASQERWDETLELVEELRGGGLLRGRFSYA
VVVTALAAAGRWEETCVALEAMLVTGVSMNDDTAAEIAGSMEGRDGSEKA
YELLGKVKAAAAS*
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mRNA from alignment at P-littoralis_Contig85:255370..258758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.53.1 ID=mRNA_P-littoralis_Contig85.53.1|Name=mRNA_P-littoralis_Contig85.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3389bp|location=Sequence derived from alignment at P-littoralis_Contig85:255370..258758+ (Pylaiella littoralis U1_48)
CTCATGTTCGGGGGACATCCATCATGGCCTTCGTTACATCTCCCGCTACG
CACTCCGAGTACCCATGGCTCCCGAATCTGCCACAATGGCGCTCGGCCGC
TGCCGTCAGAGCTCACGTCACTGTCCGTGGTGCCCGTCAACTCGTAGCAG
CCGCACCAGCAGCAGCGACAGCATCAGTAGCAACGTCAACAACAACGACA
CCAACAGCGGCTTCGCCAACACCACTCTCTGCCACAGAGGCGACGCCGCC
GACGACCTCAGGATTTGGAGCCACAAAGGGTAATAAAGCGGTTTCCAAGA
GGAGGCACGTGATCGGGCTCCACTCGAAGAACTTCGTTCAGAAGGTGCAG
TGTATGCGTCCGATGGACTGGAGGAAGGTGCTACTGGAGCTCGAGGCCGC
GGAGGAAGCCTCCGACGCCGATCCGAAGACGTGTGGCATCACCACCTACA
TGTACGCAAGCTGCATCTCGCGGATGGCCAAGGCGCGGAGATGGAAAGAG
GCCCTGGGCATCTTGGAGAGGATGAGGGCGCGAGGCCTGAAGCCATCCTC
GTACTGCATGAGCTCAGCGATCAAGGCGTGCGGCGCAAAGAAGCAGTGGA
AGGAGGCGCTCAAGCTGCTAGAGCTGCGGCGGAAGGACCTCGGGGAGAAG
GCTGGAGATGATTACTGCATGAGCGCGGCGATCTACGCCTGTGGCAACTC
GGGGGAGACCGAGAAGGCGCTGGAGCTGCTGGAAGAGATGAAGGCGGGAG
GGAATACGCCGCACCCGTACGCTTACACGGCAGCCATATCGAGCTGCGGG
AACAGCATGTTGGACGACAAGGCTACGCAGCTGTTCGAGGAGATGCGACA
GGCCAGGGTGCACGTCGACGGCTTCATCGACGCCTTTTGCGTCAAGACAA
CTATAGCGGCCCTCGCCAAGAGCGGAAAGTGGAAGCAAGCGCTCAAGATC
TATGTCGAAATGGTGGAAGTCCTGCCCAGGAACAGGGACGGCATCGCCGG
CGCAAACCTCGGTATAAACGCCTTGCGAGAGGCCAGCCTCGCATGCGGGC
GTGTTGGGAACTGGAAGGCTTCCCTGAAACTGCTGGACGAGATGCGCGCA
ACGGCTATTACTCCCGAGAGCGGCTGCTACGAGGCCGCCATGAAGTCCTG
CGTTCGCAACAAAAAGTGGGAACGGGCGATCAGCCTCATGGATGAGATGG
TGGACGTGTACGGGGTGCAGCCCGAGTTGGGGGCCTACAACGTGGCCATC
AGCGCCGCGGGAAGTGCATCCTTGTGGCCCAAGGCCGTGAAGATGCTCGG
CCAGGCGCGGCACTACGGGCTGCAGCCGGACCCCACAACCTACAGCGCGG
TCGTCACCGCCTGCGGCAAGGCCGGGGCGTGGCAGGAGTCCCTACGGCTG
CTGGAGGACATGCGTGAAGTCGGGGTGGAGCCTAACTGCTACAACTTCAG
GGCGGCCATGACGGCGTGCGGCAAGGCGGGCCAGTGGCAGCGTGCCGTGG
GGCTCCTCGGGGAGATGAAGGGCGGCGGGCTCGAGCTAGACGTCTCCGCG
TACAACACCGCCATTATGGCGTGCATCGGCTCCGTCCGCGGGGCGGAGGC
CTCGGCGCTGCTCGGAGAGATGCGGGCGGCCGGGGTAGAGCCCAGCGCGG
ACACCTATCGCCTCGTCATCATCGCGTGCGGGAAGTCAGGCATGTGGGAG
CAGTCGACAGCGCACCTGCGGGAAATGGTCGAGCAGGGGTTGAGCCCGAA
CAGCCTCATTTACGCCTCTATCATCACCGGCTTCGGCCACGCCAAGGAGT
GGGACAATGCGCTGGAGTTTCTCGCCGGGATGCCGGCCGCCGGGGTCGAA
CCCAATCTCCACCACTTCAACGCTGCGCTCCAAGCCTGCGACTGGTCGGG
TCAAGGAGAGGCGGCCGCGAGACTGCTGCGGGGGATGGAGGAAGAATATG
GGGTGCGCCCCGATTGGAACAGTTACGCTTTCGCCGTCTCTGCCTGCGCG
TTCGGAGGCCAGGACGAGCTCGCGCTGGAGCTGCTTGGGGAGACGAAGAA
ATTGTCGGCGTCGGGGGCTCCGCCGCGCTCCCGGCTGTACGAGTCAGCGC
TCCGAGCGTGCGGCAACTCCCCCGGCGGGTCGCAATGGCGACAGGCCAAG
GAGCTCCTCGATGAAGCGCGCGGGACGGGGGTCGCTCTCAGCGTGCGCGC
GTACAACAACGCCATGAAGGCGGCGGCCGCGGCGGGGGAGGTGGACGAGG
TGGTAGCTCGTTTGGCCGAGGTGAGGGAGGCCGGCGGCGGCCTCAAGCCG
GACTGCGTCAGCTTCAGCTGGGCGCTGCCGGCGCTGGCAAGCCAGGAGCG
GTGGGACGAAACTCTGGAGCTAGTGGAGGAGCTCCGGGGGGGCGGGCTGT
TGCGAGGCCGGTTCTCGTACGCCGTCGTCGTGACGGCTCTAGCTGCCGCC
GGCCGATGGGAGGAGACCTGCGTCGCGCTCGAGGCCATGCTGGTGACAGG
CGTGTCCATGAACGACGACACCGCGGCGGAAATCGCTGGGTCGATGGAGG
GGCGGGATGGGTCGGAGAAAGCGTATGAGCTGCTGGGAAAAGTTAAGGCT
GCTGCTGCTTCCTGAGGCGAAACAAGCCTGAGTAGCTACATGGATGACGC
TCCGGGTGGGGAAGAGCGTTGGAGCTGCTGGAAAGGGTAAAGGCTGGTGA
TGCTGCTGCCTCCAAGACGAACGAGACTTTCGTAGCTGGGCAAATATTTG
CTGGCGATGGTGTTGGAGATGGGGGCTAAGGAGAGGGGCGATGTTTTCAC
GTTTTTGCCCCTCGGGGTTAGGTTTTTCGGGTGCTGTGTTTTTGTATATC
GTTTGAAATGATGCACGCGTATTTTTTGTGTGTTTGTGTTTGTGTGAGGG
TGGGGAAGGGCTTCCTTGGATGTGTGGACTCGCACTAGTATGTACGAAGT
ACAGCAGCAGCACTATGCTTCGTCGTTGGGTTCGAGAATTAATTTATCTT
GACTATTTTTGGAGTTGTTACGCCAAAAATTCGTTGGACGGAAAGCTGTG
CAGTGCTTTGCTCAGCCTTTATTTTCCATATCATCATCTGCGTGCCGCCG
TGATAGTGAAGCCAGCAGCGGCATACTCGCCTTGCAACATTGAGGCCGGC
TTGCAGACAAATCCAATGTTTACTCCCGGTTCTTGATTGGGCTGGCAAAA
GCTTTGGAGCTTTGGCCCATTTTTATCCGCGACGTTTGGCACGACAGACA
ACTGATGTTGGTTGTCGACCGTTGCCTGTGTTGTCTTTTTAATCAGGTAT
CGCAAACCATTCCTTTTGAACAATTTTTGCTCTGTTTCTCTGACATAACA
TTTTTTAATCGGGATGCTCTGTGGCAAGTACGTGAACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig85:255370..258758+

>mRNA_P-littoralis_Contig85.53.1 ID=mRNA_P-littoralis_Contig85.53.1|Name=mRNA_P-littoralis_Contig85.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2592bp|location=Sequence derived from alignment at P-littoralis_Contig85:255370..258758+ (Pylaiella littoralis U1_48)
ATGGCCTTCGTTACATCTCCCGCTACGCACTCCGAGTACCCATGGCTCCC
GAATCTGCCACAATGGCGCTCGGCCGCTGCCGTCAGAGCTCACGTCACTG
TCCGTGGTGCCCGTCAACTCGTAGCAGCCGCACCAGCAGCAGCGACAGCA
TCAGTAGCAACGTCAACAACAACGACACCAACAGCGGCTTCGCCAACACC
ACTCTCTGCCACAGAGGCGACGCCGCCGACGACCTCAGGATTTGGAGCCA
CAAAGGGTAATAAAGCGGTTTCCAAGAGGAGGCACGTGATCGGGCTCCAC
TCGAAGAACTTCGTTCAGAAGGTGCAGTGTATGCGTCCGATGGACTGGAG
GAAGGTGCTACTGGAGCTCGAGGCCGCGGAGGAAGCCTCCGACGCCGATC
CGAAGACGTGTGGCATCACCACCTACATGTACGCAAGCTGCATCTCGCGG
ATGGCCAAGGCGCGGAGATGGAAAGAGGCCCTGGGCATCTTGGAGAGGAT
GAGGGCGCGAGGCCTGAAGCCATCCTCGTACTGCATGAGCTCAGCGATCA
AGGCGTGCGGCGCAAAGAAGCAGTGGAAGGAGGCGCTCAAGCTGCTAGAG
CTGCGGCGGAAGGACCTCGGGGAGAAGGCTGGAGATGATTACTGCATGAG
CGCGGCGATCTACGCCTGTGGCAACTCGGGGGAGACCGAGAAGGCGCTGG
AGCTGCTGGAAGAGATGAAGGCGGGAGGGAATACGCCGCACCCGTACGCT
TACACGGCAGCCATATCGAGCTGCGGGAACAGCATGTTGGACGACAAGGC
TACGCAGCTGTTCGAGGAGATGCGACAGGCCAGGGTGCACGTCGACGGCT
TCATCGACGCCTTTTGCGTCAAGACAACTATAGCGGCCCTCGCCAAGAGC
GGAAAGTGGAAGCAAGCGCTCAAGATCTATGTCGAAATGGTGGAAGTCCT
GCCCAGGAACAGGGACGGCATCGCCGGCGCAAACCTCGGTATAAACGCCT
TGCGAGAGGCCAGCCTCGCATGCGGGCGTGTTGGGAACTGGAAGGCTTCC
CTGAAACTGCTGGACGAGATGCGCGCAACGGCTATTACTCCCGAGAGCGG
CTGCTACGAGGCCGCCATGAAGTCCTGCGTTCGCAACAAAAAGTGGGAAC
GGGCGATCAGCCTCATGGATGAGATGGTGGACGTGTACGGGGTGCAGCCC
GAGTTGGGGGCCTACAACGTGGCCATCAGCGCCGCGGGAAGTGCATCCTT
GTGGCCCAAGGCCGTGAAGATGCTCGGCCAGGCGCGGCACTACGGGCTGC
AGCCGGACCCCACAACCTACAGCGCGGTCGTCACCGCCTGCGGCAAGGCC
GGGGCGTGGCAGGAGTCCCTACGGCTGCTGGAGGACATGCGTGAAGTCGG
GGTGGAGCCTAACTGCTACAACTTCAGGGCGGCCATGACGGCGTGCGGCA
AGGCGGGCCAGTGGCAGCGTGCCGTGGGGCTCCTCGGGGAGATGAAGGGC
GGCGGGCTCGAGCTAGACGTCTCCGCGTACAACACCGCCATTATGGCGTG
CATCGGCTCCGTCCGCGGGGCGGAGGCCTCGGCGCTGCTCGGAGAGATGC
GGGCGGCCGGGGTAGAGCCCAGCGCGGACACCTATCGCCTCGTCATCATC
GCGTGCGGGAAGTCAGGCATGTGGGAGCAGTCGACAGCGCACCTGCGGGA
AATGGTCGAGCAGGGGTTGAGCCCGAACAGCCTCATTTACGCCTCTATCA
TCACCGGCTTCGGCCACGCCAAGGAGTGGGACAATGCGCTGGAGTTTCTC
GCCGGGATGCCGGCCGCCGGGGTCGAACCCAATCTCCACCACTTCAACGC
TGCGCTCCAAGCCTGCGACTGGTCGGGTCAAGGAGAGGCGGCCGCGAGAC
TGCTGCGGGGGATGGAGGAAGAATATGGGGTGCGCCCCGATTGGAACAGT
TACGCTTTCGCCGTCTCTGCCTGCGCGTTCGGAGGCCAGGACGAGCTCGC
GCTGGAGCTGCTTGGGGAGACGAAGAAATTGTCGGCGTCGGGGGCTCCGC
CGCGCTCCCGGCTGTACGAGTCAGCGCTCCGAGCGTGCGGCAACTCCCCC
GGCGGGTCGCAATGGCGACAGGCCAAGGAGCTCCTCGATGAAGCGCGCGG
GACGGGGGTCGCTCTCAGCGTGCGCGCGTACAACAACGCCATGAAGGCGG
CGGCCGCGGCGGGGGAGGTGGACGAGGTGGTAGCTCGTTTGGCCGAGGTG
AGGGAGGCCGGCGGCGGCCTCAAGCCGGACTGCGTCAGCTTCAGCTGGGC
GCTGCCGGCGCTGGCAAGCCAGGAGCGGTGGGACGAAACTCTGGAGCTAG
TGGAGGAGCTCCGGGGGGGCGGGCTGTTGCGAGGCCGGTTCTCGTACGCC
GTCGTCGTGACGGCTCTAGCTGCCGCCGGCCGATGGGAGGAGACCTGCGT
CGCGCTCGAGGCCATGCTGGTGACAGGCGTGTCCATGAACGACGACACCG
CGGCGGAAATCGCTGGGTCGATGGAGGGGCGGGATGGGTCGGAGAAAGCG
TATGAGCTGCTGGGAAAAGTTAAGGCTGCTGCTGCTTCCTGA
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