mRNA_P-littoralis_Contig848.1.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5L9J1_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J1_9PHAE) HSP 1 Score: 117 bits (293), Expect = 2.210e-29 Identity = 53/123 (43.09%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
E+PVG +++ LR YG + V +S K+W ++ KI QP Q Q+LA +PQ +RVFL + +S ER L++ W + Q ES+ DY RA A+ M+L SYGD R++ +MC+HIVRG
Sbjct: 103 EVPVGATGMDLNWLRSTYGEERVKQSRKIWTFMLAKITAQPAQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGF 225
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5JXD4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD4_9PHAE) HSP 1 Score: 118 bits (295), Expect = 3.970e-28 Identity = 51/123 (41.46%), Postives = 78/123 (63.41%), Query Frame = 1
Query: 16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
E+PVG +++ L +G + V +S K+W ++ KI QP+Q Q+LA +PQ +RVFL D+ +S ER L++ W + Q ES+ DY RA + M+L SYGD R++++MC+HIVRG
Sbjct: 213 EVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQDSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVGLWMRLRSYGDNRDETSMCRHIVRGF 335
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5JY94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY94_9PHAE) HSP 1 Score: 117 bits (292), Expect = 9.810e-28 Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 1
Query: 16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRG-LDDVRKSAD 408
E+PVG +++ L +G + V +S K+W ++ KI QP+Q Q+LA +PQ +RVFL + +S ER L++ W + Q +ES+ DY RA A+ M+L SYGD R++ +MC+HIVRG L KS D
Sbjct: 184 EVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQAESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGFLPRFEKSKD 315
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5KPN8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN8_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.360e-27 Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
E+PVG +++ L +G + V +S K+W ++ KI QP+Q Q+LA PQ +RVFL + ++S ER L++ W + Q ES+ DY RA A+ M+L SYGD R++ +MCKHIVRG
Sbjct: 139 EVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASEPPQAGYRVFLEQYSQEKSHERQTLDDAWNLIGQRQGESLKDYYGRAVALWMRLRSYGDNRDEKSMCKHIVRGF 261
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE) HSP 1 Score: 116 bits (290), Expect = 1.630e-27 Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
E+PVG +++ LR YG + V + K+W ++ KI QP+Q Q+LA +PQ +RVF+ + +S ER L++ W + Q ES+ DY RA A+ M+L SYGD R++ +MC+HIVRG
Sbjct: 5 EVPVGATGMDLNWLRSTYGEERVKQPRKIWTFMLAKITAQPVQAQILAAESPQAGYRVFIDQYSQDKSQERQNLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDYRDEKSMCRHIVRGF 127
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5JD49_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD49_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.640e-27 Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
E+PVG +++ L +G + V +S K+W ++ KI QP+Q Q+LA +PQ +RVFL + +S ER L++ W + Q ES+ DY RA A+ M+L SYGD R++ +MC+HIVRG
Sbjct: 139 EVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGF 261
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5JC40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC40_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.730e-25 Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 19 IPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
+PVG +++ L +G + V +S K+W ++ KI QP+Q Q+LA +P+ RVFL + +S ER L+ W + Q ES+ DY RA A+ M+L SYGD R++ +MC+HIVRG
Sbjct: 691 VPVGAAGVDLSWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPRAGCRVFLEQYSQDKSQERQTLDAAWDVIGQRQGESIMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGF 812 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig848.1.1 >prot_P-littoralis_Contig848.1.1 ID=prot_P-littoralis_Contig848.1.1|Name=mRNA_P-littoralis_Contig848.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp MDSQMEIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQback to top mRNA from alignment at P-littoralis_Contig848:538..951+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig848.1.1 ID=mRNA_P-littoralis_Contig848.1.1|Name=mRNA_P-littoralis_Contig848.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig848:538..951+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig848:538..951+ >mRNA_P-littoralis_Contig848.1.1 ID=mRNA_P-littoralis_Contig848.1.1|Name=mRNA_P-littoralis_Contig848.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig848:538..951+ (Pylaiella littoralis U1_48)back to top |