mRNA_P-littoralis_Contig848.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig848.1.1
Unique NamemRNA_P-littoralis_Contig848.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5L9J1_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J1_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.210e-29
Identity = 53/123 (43.09%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
            E+PVG   +++  LR  YG + V +S K+W  ++ KI  QP Q Q+LA  +PQ  +RVFL   +  +S ER  L++ W  + Q   ES+ DY  RA A+ M+L SYGD R++ +MC+HIVRG 
Sbjct:  103 EVPVGATGMDLNWLRSTYGEERVKQSRKIWTFMLAKITAQPAQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGF 225          
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5JXD4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.970e-28
Identity = 51/123 (41.46%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
            E+PVG   +++  L   +G + V +S K+W  ++ KI  QP+Q Q+LA  +PQ  +RVFL  D+  +S ER  L++ W  + Q   ES+ DY  RA  + M+L SYGD R++++MC+HIVRG 
Sbjct:  213 EVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQDSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVGLWMRLRSYGDNRDETSMCRHIVRGF 335          
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5JY94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY94_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 9.810e-28
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 1
Query:   16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRG-LDDVRKSAD 408
            E+PVG   +++  L   +G + V +S K+W  ++ KI  QP+Q Q+LA  +PQ  +RVFL   +  +S ER  L++ W  + Q  +ES+ DY  RA A+ M+L SYGD R++ +MC+HIVRG L    KS D
Sbjct:  184 EVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQAESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGFLPRFEKSKD 315          
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5KPN8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.360e-27
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
            E+PVG   +++  L   +G + V +S K+W  ++ KI  QP+Q Q+LA   PQ  +RVFL   + ++S ER  L++ W  + Q   ES+ DY  RA A+ M+L SYGD R++ +MCKHIVRG 
Sbjct:  139 EVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASEPPQAGYRVFLEQYSQEKSHERQTLDDAWNLIGQRQGESLKDYYGRAVALWMRLRSYGDNRDEKSMCKHIVRGF 261          
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.630e-27
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
            E+PVG   +++  LR  YG + V +  K+W  ++ KI  QP+Q Q+LA  +PQ  +RVF+   +  +S ER  L++ W  + Q   ES+ DY  RA A+ M+L SYGD R++ +MC+HIVRG 
Sbjct:    5 EVPVGATGMDLNWLRSTYGEERVKQPRKIWTFMLAKITAQPVQAQILAAESPQAGYRVFIDQYSQDKSQERQNLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDYRDEKSMCRHIVRGF 127          
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5JD49_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD49_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.640e-27
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   16 EIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
            E+PVG   +++  L   +G + V +S K+W  ++ KI  QP+Q Q+LA  +PQ  +RVFL   +  +S ER  L++ W  + Q   ES+ DY  RA A+ M+L SYGD R++ +MC+HIVRG 
Sbjct:  139 EVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGF 261          
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Match: A0A6H5JC40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC40_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.730e-25
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   19 IPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSRASAIRMKLGSYGDTREDSTMCKHIVRGL 384
            +PVG   +++  L   +G + V +S K+W  ++ KI  QP+Q Q+LA  +P+   RVFL   +  +S ER  L+  W  + Q   ES+ DY  RA A+ M+L SYGD R++ +MC+HIVRG 
Sbjct:  691 VPVGAAGVDLSWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPRAGCRVFLEQYSQDKSQERQTLDAAWDVIGQRQGESIMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGF 812          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig848.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L9J1_9PHAE2.210e-2943.09Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JXD4_9PHAE3.970e-2841.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JY94_9PHAE9.810e-2841.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPN8_9PHAE1.360e-2742.28Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQJ6_9PHAE1.630e-2741.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JD49_9PHAE1.640e-2741.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JC40_9PHAE2.730e-2540.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig848contigP-littoralis_Contig848:538..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog102107.XP_008245036.1
PFAMsRetrotran_gag_2
Model size414
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.36e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V25@33090|Viridiplantae,3GJ8R@35493|Streptophyta
Descriptiongag-polypeptide of LTR copia-type
Cds size414
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.5621958-CDS-P-littoralis_Contig848:537..9511680791712.5621958-CDS-P-littoralis_Contig848:537..951Pylaiella littoralis U1_48CDSP-littoralis_Contig848 538..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig848.1.1prot_P-littoralis_Contig848.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig848 538..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig848.1.1

>prot_P-littoralis_Contig848.1.1 ID=prot_P-littoralis_Contig848.1.1|Name=mRNA_P-littoralis_Contig848.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MDSQMEIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQ
VLACRTPQQAWRVFLSHDAVKRSDERNQLEEEWTYLKQGDSESVTDYLSR
ASAIRMKLGSYGDTREDSTMCKHIVRGLDDVRKSADW*
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mRNA from alignment at P-littoralis_Contig848:538..951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig848.1.1 ID=mRNA_P-littoralis_Contig848.1.1|Name=mRNA_P-littoralis_Contig848.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig848:538..951+ (Pylaiella littoralis U1_48)
ATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAAAACATCAACATGCA ACAACTCAGACTTGACTATGGTAGTGATAACGTCACAAAATCCCTCAAAG TGTGGAACATGCTCATCCAAAAAATCTGCTGCCAGCCTATCCAGCAACAG GTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGCGTGTGTTTTTGTCTCA TGACGCAGTGAAGAGGTCGGACGAGAGAAACCAGCTAGAAGAGGAATGGA CTTATCTGAAGCAGGGAGACAGCGAGAGTGTGACGGACTATCTGTCTAGG GCTAGTGCAATTCGGATGAAACTAGGGTCGTATGGTGACACACGTGAAGA TTCAACAATGTGCAAACACATCGTTCGTGGCCTTGATGATGTCCGTAAGA GCGCGGATTGGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig848:538..951+

>mRNA_P-littoralis_Contig848.1.1 ID=mRNA_P-littoralis_Contig848.1.1|Name=mRNA_P-littoralis_Contig848.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig848:538..951+ (Pylaiella littoralis U1_48)
ATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAAAACATCAACATGCA
ACAACTCAGACTTGACTATGGTAGTGATAACGTCACAAAATCCCTCAAAG
TGTGGAACATGCTCATCCAAAAAATCTGCTGCCAGCCTATCCAGCAACAG
GTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGCGTGTGTTTTTGTCTCA
TGACGCAGTGAAGAGGTCGGACGAGAGAAACCAGCTAGAAGAGGAATGGA
CTTATCTGAAGCAGGGAGACAGCGAGAGTGTGACGGACTATCTGTCTAGG
GCTAGTGCAATTCGGATGAAACTAGGGTCGTATGGTGACACACGTGAAGA
TTCAACAATGTGCAAACACATCGTTCGTGGCCTTGATGATGTCCGTAAGA
GCGCGGATTGGTAG
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