mRNA_P-littoralis_Contig847.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig847.15.1
Unique NamemRNA_P-littoralis_Contig847.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.180e-60
Identity = 120/270 (44.44%), Postives = 171/270 (63.33%), Query Frame = 1
Query:    1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSP---AKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARGKAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYS----SMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKL 789
            MAPRHRK  V+AE +CVDL  +LEP+ A    LL LA +  D  V  Y+Q  E VS    A+L  +++  +D+   SPY  ++GE+Q+EWR K  R  +  A  DT   +V+P+G+ES+QH+ RE VV LLKQ LN+  FFKFGLKLYSL QN+NFR +++  D+R+R  D+W T    ++K    D+IL  LVEKT EAVEM+ + + E+     +M+   +   RDS+  + ++ YE+ RNKGLD IAV++  R+  L  W  K++ L
Sbjct:    1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWIT----VSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTL 266          
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 188 bits (477), Expect = 5.250e-54
Identity = 116/270 (42.96%), Postives = 165/270 (61.11%), Query Frame = 1
Query:    1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSPAKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARG-KAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADE-WTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYS----SMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKLV 792
            MA R+RK  ++A L+C DLST+LE +R +   L+ L    +D  V+ Y+Q  E +S   L    +  + I+  S Y    GE+Q+EWR+KP RG K +  K DT A  V+P+G ES+QH+    V  LL+ +  ID F+KFGLKLYSL QN+NFRA++  K+ R+  + + W T    + +    D+IL+ LVEKT EAV MF + IP Y      MY+  I A++DS   + R+ YE+ RNK L+NIAV++TD +  +  WS KK KLV
Sbjct:   99 MALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWIT----VPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLV 364          
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.170e-53
Identity = 113/261 (43.30%), Postives = 164/261 (62.84%), Query Frame = 1
Query:   28 VQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSP---AKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARGKAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYS----SMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKL 789
            V+AE +CVDL  +LEP+ A    LL LA +  D  V  Y+Q  E VS    A+L  +++  +D+   SPY  ++GE+Q+EWR K  R  +  A  DT   +V+P+G+ES+QH+ RE VV LLKQ LN+  FFKFGLKLYSL QN+NFR +++  D+R+R  D+W T    ++K    D+IL  LVEKT EAVEM+ + + E+     +M+   +   RDS   + ++ YE++RNKGLD IAV++  R+  L  W  K++ L
Sbjct: 2138 VRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWIT----VSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKRVTL 2394          
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.070e-51
Identity = 114/270 (42.22%), Postives = 162/270 (60.00%), Query Frame = 1
Query:    1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSPAKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARG-KAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADE-WTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYS----SMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKLV 792
            M  R+RK  ++A L+C DLST+LE +R +   L+ L    +D  V+ Y+Q  E +S   L    +  + I   S Y    GE+Q+EWR+KP RG K I  K DT A  V+P+G ES++H+    V  LL+ +  ID F+KFGLKLYSL QN+NFRA++  K+ R+  + + W T    + +    D+IL+ LVEKT EAV MF + IP Y      M++  I A +DS   + R+ YE+ RNK L+NIAV++TD +  +  WS KK KLV
Sbjct:    1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWIT----VPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLV 266          
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 8.390e-39
Identity = 104/266 (39.10%), Postives = 147/266 (55.26%), Query Frame = 1
Query:    1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSPAKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARG-KAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADE-WTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYSSMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKLV 792
            MA R+RK  V+A L+C DL T+LE +R +   L+ L    +D  V+ Y Q  E +S   L    +  I     S +     E Q+EWR+KP  G K I  K +T A  VHP+G ES+QH   + +  LL+ +  ID F KFGLKLYSL QN+NFR ++  K+ R+  + + W T  +E   Y   D+IL+ LV+KT EAV +               I A +DS   + R+ YE  R + L+NIAV++TD ++ +  WS KK KLV
Sbjct:    1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPRE-EAY---DEILQILVKKTREAVSI---------------ILAYKDSAFPEQRKLYE--RRRILNNIAVSVTDNMRRMSGWSDKKRKLV 245          
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 8.690e-20
Identity = 76/253 (30.04%), Postives = 115/253 (45.45%), Query Frame = 1
Query:    1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSPAKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARGKAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYSSMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWL 759
            +A  HRK +VQA+ +C DLST+LEP+R ++ +L+ L     D  V+ Y+Q  E +S  KL S  KD + I   +PY            S P  G    +            GD  +     E +  LL  +  +D F+KFG+KLY L+QN+NFRA++  K +                          + V  +C           ++    A  I  ++DS   + R+ YE+ RNK L+NIAV +TD +  L
Sbjct:    6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPY------------SIPLLGSCNRS------------GDPRL-----EFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV--------------------------SGVLPSCHI---------DHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRL 194          
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.590e-6
Identity = 48/166 (28.92%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  319 IVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDI--RLRAADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIP-------EYSSMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKL 789
            IV+P+G ES+ H+  E +  LL      D  F+FG KLY+L++NMNF+       I  RL     W T+     K +    +LENL +   EAV+ + + IP       E    Y   IF  ++   +     Y +    G + +A  + ++++ +   + KK+KL
Sbjct:  131 IVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLEEDSAWVTQ----RKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQEDMPV-----YRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KC66_9PHAE2.180e-6044.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
Q8QN59_ESV1K5.250e-5442.96EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JH58_9PHAE2.170e-5343.30Reverse transcriptase domain-containing protein n=... [more]
D8LP42_ECTSI1.070e-5142.22EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K0V6_9PHAE8.390e-3939.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K135_9PHAE8.690e-2030.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA4_9PHAE1.590e-628.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig847contigP-littoralis_Contig847:69785..70579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size795
Hectar predicted targeting categoryother localisation
Exons1
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.13832-UTR-P-littoralis_Contig847:69784..701291680791712.13832-UTR-P-littoralis_Contig847:69784..70129Pylaiella littoralis U1_48UTRP-littoralis_Contig847 69785..70129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.1546323-CDS-P-littoralis_Contig847:70129..705791680791712.1546323-CDS-P-littoralis_Contig847:70129..70579Pylaiella littoralis U1_48CDSP-littoralis_Contig847 70130..70579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig847.15.1prot_P-littoralis_Contig847.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig847 70130..70579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig847.15.1

>prot_P-littoralis_Contig847.15.1 ID=prot_P-littoralis_Contig847.15.1|Name=mRNA_P-littoralis_Contig847.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp
MQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLR
AADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYSSMYAHD
IFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKLV*
back to top

mRNA from alignment at P-littoralis_Contig847:69785..70579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig847.15.1 ID=mRNA_P-littoralis_Contig847.15.1|Name=mRNA_P-littoralis_Contig847.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig847:69785..70579+ (Pylaiella littoralis U1_48)
ATGGCGCCGCGTCACAGAAAGCAAAAGGTACAGGCGGAACTTGCTTGTGT TGATTTGAGCACCATGCTAGAACCTCTCCGCGCGAAGTTCCAACACCTCC TCCGTTTAGCGACATCCTCTAAGGATGATTAGGTGTGGTGTTATATTCAA TTCAAGGAGTTCGTGTCCCCTGCCAAACTCAGAAGTGTTTGGAAGGACGA CATAGACATTATTTAAACCTCCCCGTATATTAAGGTGGACGGTGAAATCC AGGATGAATGGCGGTCGAAACCAGCGCGTGGAAAGGCAATCATCGCCAAG CCAGACACCCACGCCAGAATCGTGCACCCCGTGGGCGACGAATCTATGCA ACACGTCCCGCGAGAGGACGTGGTGGGCCTTCTGAAACAAATGCTCAACA TCGATGCTTTCTTCAAGTTTGGGCTAAAACTGTACTCGCTCGACCAAAAC ATGAACTTTCGGGCACAGAGACACCGTAAGGACATCCGACTCCGTGCTGC TGATGAATGGACCACCAAAGACCAAGAACTCAACAAGTACATCGTGAACG ATGATATTTTGGAAAACCTAGTCGAGAAGACATGCGAGGCTGTCGAAATG TTCGGGGAAGACATCCCGGAGTACTCCAGCATGTATGCACATGACATATT TGCAAACAGGGACTCAACCCACCTCAAGAGTAGGGAGGCATATGAGCAAG CTCGCAACAAGGGATTGGACAACATAGCCGTGACGATTACGGACAGAGTA AAGTGGCTGCGTAGCTGGAGTGCCAAAAAAATAAAGCTCGTCTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig847:69785..70579+

>mRNA_P-littoralis_Contig847.15.1 ID=mRNA_P-littoralis_Contig847.15.1|Name=mRNA_P-littoralis_Contig847.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig847:69785..70579+ (Pylaiella littoralis U1_48)
ATGCAACACGTCCCGCGAGAGGACGTGGTGGGCCTTCTGAAACAAATGCT
CAACATCGATGCTTTCTTCAAGTTTGGGCTAAAACTGTACTCGCTCGACC
AAAACATGAACTTTCGGGCACAGAGACACCGTAAGGACATCCGACTCCGT
GCTGCTGATGAATGGACCACCAAAGACCAAGAACTCAACAAGTACATCGT
GAACGATGATATTTTGGAAAACCTAGTCGAGAAGACATGCGAGGCTGTCG
AAATGTTCGGGGAAGACATCCCGGAGTACTCCAGCATGTATGCACATGAC
ATATTTGCAAACAGGGACTCAACCCACCTCAAGAGTAGGGAGGCATATGA
GCAAGCTCGCAACAAGGGATTGGACAACATAGCCGTGACGATTACGGACA
GAGTAAAGTGGCTGCGTAGCTGGAGTGCCAAAAAAATAAAGCTCGTCTAA
back to top