mRNA_P-littoralis_Contig846.10.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig846.10.2
Unique NamemRNA_P-littoralis_Contig846.10.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.420e-57
Identity = 111/217 (51.15%), Postives = 144/217 (66.36%), Query Frame = 1
Query:  292 FSQMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDRWGDACVRGLTAGEAGVSGVLGLVGGRDVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDLSTGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHRALLN 942
            F Q LS+V+ VQ C GIS+Q V D + +  GSA V+ SVVR A+R + GDDGL+  +RW  A VRG+T G A VSGVLGLV G DVLWSK+C  +AS N    G   PRC++C++FWR  VK ++++F   A K+T    LST QK  ++  +AADLKA  E  +R ++   KY E+C E P +QGDA+H+FLI   TR LLD KLP  S+ R LLN
Sbjct:   18 FWQALSKVACVQACLGISQQRVADDKALPEGSAGVFPSVVRAAERTLGGDDGLAPPERWEHARVRGVTTGRACVSGVLGLVEGSDVLWSKDCCGMASVNRGAGGSMVPRCSRCQKFWRDNVKGRMESFHGDAAKNTAIDHLSTAQKKTRILESAADLKATQEKQQRLEQKTMKYLEECREFPDDQGDAIHKFLIADSTRTLLDKKLPAESDERTLLN 234          
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.650e-57
Identity = 113/216 (52.31%), Postives = 140/216 (64.81%), Query Frame = 1
Query:  298 QMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDRWGDACVRGLTAGEAGVSGVLGLVGGR-DVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDLSTGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHRALLN 942
            Q+L  V  V PC G +RQH+     +  GSA+ W SVVR A+R + GD     G+RW +A VRG+  G  GVSGVLG VG   DVLWSK+C  VAS  A      G RC++CK+FWR T KP+I         +T +  LS+GQK  KLS+ A  +KAANE  ERW   VK+YRE+C E P++QGDAVH+FLI  +TR+LLD KLPP SE RALLN
Sbjct:   48 QVLRIVDSVLPCLGYARQHMEYERRLPTGSAEAWGSVVRGAERALLGDHVPVMGERWRNAPVRGVLKGSGGVSGVLGTVGHTVDVLWSKDCTGVASDYA----SGGQRCSRCKKFWRDTAKPRITTLTGEPKPNTANYRLSSGQKTTKLSQLATSMKAANEPAERWHRKVKQYREECIEFPKDQGDAVHKFLIDQETRELLDKKLPPKSEQRALLN 259          
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.750e-37
Identity = 96/269 (35.69%), Postives = 150/269 (55.76%), Query Frame = 1
Query:  184 IAPDVLRGLGPILWLDVICD*DIRRPTCCVWRLVCF-----FSQMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAGEAGVSGVLGLVG-----------GRDVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDL--STGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 930
            + P  L+G+GPI    +  +    R    + R          +++L+ V    PC+G+S+QHV +  +M  G+ADV+ S+VRQAQ N+E +  L  G+R  W +A V GL +G +GVSGVLG VG           G  V W+K C  VA+        + PRC  C++F R  ++P+++N  S A    + K+L  ++ QK  KL  TAADL     A  R +E +   R++C  +P EQG+A+H+FL+  +T++++ S+LP GS+ R
Sbjct:  136 LGPTKLKGVGPIT--SITFNGHCVRNHDALRRFTAIGAEGDLTELLNVVWHTLPCQGVSQQHVREDANMPAGAADVFPSLVRQAQWNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGAHSVPGHGGVGGHKVFWAKGCVGVATPFQGL--NSVPRCQGCRDFVREALRPRLEN-ASKAESLKSSKNLYMTSAQKDHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 399          
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.190e-34
Identity = 98/282 (34.75%), Postives = 152/282 (53.90%), Query Frame = 1
Query:  184 IAPDVLRGLGPILWLDVICD*D---IRRPTCCVWRLVCFFSQMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAGEAGVSGVLGLVGGRDV-----------LWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDL--STGQKLD---------------KLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 930
            + P  L+G+GPI  ++  C  +   +RR T          +++L+ V    PC+G+S+QHV +   M  G+ADV+ S+VRQAQRN+E +  L  G+R  W +A V GL +G +GVSGVLG VGG  V            W+K C  VA+        + PRC  C+ F R  ++P+++N  S A    + K++  +  QK+D               KL  TAADL        R +E +   R++C  +P EQG+A+H+FL+  +T++++ S+LP GS+ R
Sbjct:  165 LGPTKLKGVGPITSINGHCVRNHDALRRFTAI--GAEDDLTELLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGL--NSVPRCQGCRGFVREALRPRLQN-ASKAESLKSSKNIYMTRAQKVDVTIVSAPQRVPRITSKLWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 441          
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.130e-34
Identity = 96/280 (34.29%), Postives = 150/280 (53.57%), Query Frame = 1
Query:  184 IAPDVLRGLGPILWLDVICD*DIRRPTCCVWRLVCF-----FSQMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAGEAGVSGVLGLVGGRDV-----------LWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDL--STGQKLD-----------KLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 930
            + P  L+G+GPI    +  +    R    + R          +++L+ V    PC+G+S+QHV +   M  G+ADV+ S+VRQAQRN+E +  L  G+R  W +A V GL +G +GVSGVLG VGG  V            W+K C  VA+        + PRC  C+ F R  ++P+++N  S A    + K++  ++ QK+D           KL  TAA L     A  R +E +   R++C  +P EQG+A+H+FL+  +T++++ S+LP GS+ R
Sbjct:  258 LGPTKLKGVGPIT--SITFNGHCVRNHDALRRFTAIGAEDDLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGL--NSVPRCQGCRGFVREALRPRLEN-ASKAESLKSSKNIYMTSAQKVDETIVLAPQRDHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 532          
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.460e-13
Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  334 RGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAG---DRWGDACVRGLTAGEAG-VSGVLGLVGGRDVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDK-----DLSTGQK 729
            RG+ R H+ + +D+   +   + +VVRQA R +E    +      DRW  A VRG+ AG  G VSGV+GLVG  DVLWS+ C   A+ +    G   PRC  CK+F+R  + P+  +    A KHT  K     ++ST QK
Sbjct:    5 RGVCRSHMFEDKDVPLETVAAFGTVVRQALRILEKVPAILQPHDRDRWQHADVRGVLAGPNGHVSGVMGLVGREDVLWSRKCTGFATPSYGRTGV--PRCTHCKDFYRRGMTPRTAH----AAKHTPAKKTRVSEMSTAQK 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRH8_9PHAE1.420e-5751.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.650e-5752.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I2_ECTSI2.750e-3735.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI2_ECTSI1.190e-3434.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF4_9PHAE2.130e-3434.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN5_9PHAE2.460e-1339.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig846contigP-littoralis_Contig846:93312..94481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size943
Hectar predicted targeting categoryother localisation
Exons2
Cds size642
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.2376664-UTR-P-littoralis_Contig846:93311..936111680791711.2376664-UTR-P-littoralis_Contig846:93311..93611Pylaiella littoralis U1_48UTRP-littoralis_Contig846 93312..93611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.2488396-CDS-P-littoralis_Contig846:93611..940401680791711.2488396-CDS-P-littoralis_Contig846:93611..94040Pylaiella littoralis U1_48CDSP-littoralis_Contig846 93612..94040 +
1680791711.2655444-CDS-P-littoralis_Contig846:94268..944811680791711.2655444-CDS-P-littoralis_Contig846:94268..94481Pylaiella littoralis U1_48CDSP-littoralis_Contig846 94269..94481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig846.10.2prot_P-littoralis_Contig846.10.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig846 93612..94481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig846.10.2

>prot_P-littoralis_Contig846.10.2 ID=prot_P-littoralis_Contig846.10.2|Name=mRNA_P-littoralis_Contig846.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=214bp
MLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGL
SAGDRWGDACVRGLTAGEAGVSGVLGLVGGRDVLWSKNCAAVASGNARTA
GGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDLSTGQKLDKLSRT
AADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLD
SKLPPGSEHRALLN
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mRNA from alignment at P-littoralis_Contig846:93312..94481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig846.10.2 ID=mRNA_P-littoralis_Contig846.10.2|Name=mRNA_P-littoralis_Contig846.10.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1170bp|location=Sequence derived from alignment at P-littoralis_Contig846:93312..94481+ (Pylaiella littoralis U1_48)
GGCATCGATGTGATGAACTGGATGAAAGACAATGCCCTGTCAACGGCTGA GGGACACATCTGCAAAAAGCAAGACCTGGCACTGGTGAGGAAAATATTAG CAGTTTTGTTGGCAACACAGGGTGCTCGAGTGTCGTCCATGCCGCGCTTT TTCCTGGGTAGGCTCTTCGTGGTATGCGCATACATAGCTCCCGACGTCTT GAGGGGTCTGGGTCCAATATTGTGGCTGGACGTGATCTGCGACTGAGATA TACGCCGCCCAACATGTTGCGTTTGGCGTTTGGTCTGTTTTTTCTCGCAG ATGCTTAGCGAAGTTTCTGGTGTCCAGCCTTGTCGTGGTATCTCCAGGCA GCACGTTGTGGACGCTGAAGACATGCAGGGGGGTTCTGCGGATGTTTGGC ACAGTGTGGTGCGCCAGGCTCAGCGCAATATCGAGGGCGATGACGGGTTA TCGGCGGGCGATCGCTGGGGTGACGCTTGCGTCAGGGGTTTGACGGCgGG GGAGGCCGGTGTTTCTGGGGTCCTCGGCTTGGTCGGGGGGCGAGATGTGT TGTGGTCGAAGAACTGTGCTGCTGTGGCGAGTGGAAACGCTCGCACTGCT GGGGGAGCGGGGCCGAGGTGTGCGAAGTGCAAGGAGTTCTGGCGTGTGAC CGTCAAGCCAAAGATCAAAAACTTCCTCTCTCCTGCGCACAAGCACACCA CGGACAAAGACCTCAGCACAGGTCAGAAGGTAAGTCAGGCTTCAACAAAC CAGCGTGGGCATGGCATGGAGTGGTTGGTGGAGAATGAGACCGTGGGCAA TGTGTGATACTCTTGTTGGGTAGGGGGAGGGTGAGGCCGCGGGCAATGTT TGCCGCGCTTGTTCGGGCAGGTGGGGGGGAGGCCGTGGGCAATGTTTGAT GCGTTGTTCACCGTTCACCATTCGTATGTGCTCCCTCGCGATATCGCTTG CCGGTAGTTGGACAAGCTCTCGAGGACAGCGGCAGACTTGAAGGCGGCGA ACGAAGCGAACGAGCGGTGGAAGGAGACAGTGAAGAAGTATCGGGAGAAG TGTACTGAGCTGCCGCAGGAGCAAGGGGACGCTGTCCACGAGTTTCTCAT CCACCCGGATACGAGGAAGCTGCTGGACTCGAAGCTCCCGCCGGGTAGCG AGCATAGGGCTCTCCTGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig846:93312..94481+

>mRNA_P-littoralis_Contig846.10.2 ID=mRNA_P-littoralis_Contig846.10.2|Name=mRNA_P-littoralis_Contig846.10.2|organism=Pylaiella littoralis U1_48|type=CDS|length=642bp|location=Sequence derived from alignment at P-littoralis_Contig846:93312..94481+ (Pylaiella littoralis U1_48)
ATGCTTAGCGAAGTTTCTGGTGTCCAGCCTTGTCGTGGTATCTCCAGGCA
GCACGTTGTGGACGCTGAAGACATGCAGGGGGGTTCTGCGGATGTTTGGC
ACAGTGTGGTGCGCCAGGCTCAGCGCAATATCGAGGGCGATGACGGGTTA
TCGGCGGGCGATCGCTGGGGTGACGCTTGCGTCAGGGGTTTGACGGCgGG
GGAGGCCGGTGTTTCTGGGGTCCTCGGCTTGGTCGGGGGGCGAGATGTGT
TGTGGTCGAAGAACTGTGCTGCTGTGGCGAGTGGAAACGCTCGCACTGCT
GGGGGAGCGGGGCCGAGGTGTGCGAAGTGCAAGGAGTTCTGGCGTGTGAC
CGTCAAGCCAAAGATCAAAAACTTCCTCTCTCCTGCGCACAAGCACACCA
CGGACAAAGACCTCAGCACAGGTCAGAAGTTGGACAAGCTCTCGAGGACA
GCGGCAGACTTGAAGGCGGCGAACGAAGCGAACGAGCGGTGGAAGGAGAC
AGTGAAGAAGTATCGGGAGAAGTGTACTGAGCTGCCGCAGGAGCAAGGGG
ACGCTGTCCACGAGTTTCTCATCCACCCGGATACGAGGAAGCTGCTGGAC
TCGAAGCTCCCGCCGGGTAGCGAGCATAGGGCTCTCCTGAAC
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