mRNA_P-littoralis_Contig846.10.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.420e-57 Identity = 111/217 (51.15%), Postives = 144/217 (66.36%), Query Frame = 1
Query: 292 FSQMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDRWGDACVRGLTAGEAGVSGVLGLVGGRDVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDLSTGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHRALLN 942
F Q LS+V+ VQ C GIS+Q V D + + GSA V+ SVVR A+R + GDDGL+ +RW A VRG+T G A VSGVLGLV G DVLWSK+C +AS N G PRC++C++FWR VK ++++F A K+T LST QK ++ +AADLKA E +R ++ KY E+C E P +QGDA+H+FLI TR LLD KLP S+ R LLN
Sbjct: 18 FWQALSKVACVQACLGISQQRVADDKALPEGSAGVFPSVVRAAERTLGGDDGLAPPERWEHARVRGVTTGRACVSGVLGLVEGSDVLWSKDCCGMASVNRGAGGSMVPRCSRCQKFWRDNVKGRMESFHGDAAKNTAIDHLSTAQKKTRILESAADLKATQEKQQRLEQKTMKYLEECREFPDDQGDAIHKFLIADSTRTLLDKKLPAESDERTLLN 234
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.650e-57 Identity = 113/216 (52.31%), Postives = 140/216 (64.81%), Query Frame = 1
Query: 298 QMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDRWGDACVRGLTAGEAGVSGVLGLVGGR-DVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDLSTGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHRALLN 942
Q+L V V PC G +RQH+ + GSA+ W SVVR A+R + GD G+RW +A VRG+ G GVSGVLG VG DVLWSK+C VAS A G RC++CK+FWR T KP+I +T + LS+GQK KLS+ A +KAANE ERW VK+YRE+C E P++QGDAVH+FLI +TR+LLD KLPP SE RALLN
Sbjct: 48 QVLRIVDSVLPCLGYARQHMEYERRLPTGSAEAWGSVVRGAERALLGDHVPVMGERWRNAPVRGVLKGSGGVSGVLGTVGHTVDVLWSKDCTGVASDYA----SGGQRCSRCKKFWRDTAKPRITTLTGEPKPNTANYRLSSGQKTTKLSQLATSMKAANEPAERWHRKVKQYREECIEFPKDQGDAVHKFLIDQETRELLDKKLPPKSEQRALLN 259
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI) HSP 1 Score: 149 bits (376), Expect = 2.750e-37 Identity = 96/269 (35.69%), Postives = 150/269 (55.76%), Query Frame = 1
Query: 184 IAPDVLRGLGPILWLDVICD*DIRRPTCCVWRLVCF-----FSQMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAGEAGVSGVLGLVG-----------GRDVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDL--STGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 930
+ P L+G+GPI + + R + R +++L+ V PC+G+S+QHV + +M G+ADV+ S+VRQAQ N+E + L G+R W +A V GL +G +GVSGVLG VG G V W+K C VA+ + PRC C++F R ++P+++N S A + K+L ++ QK KL TAADL A R +E + R++C +P EQG+A+H+FL+ +T++++ S+LP GS+ R
Sbjct: 136 LGPTKLKGVGPIT--SITFNGHCVRNHDALRRFTAIGAEGDLTELLNVVWHTLPCQGVSQQHVREDANMPAGAADVFPSLVRQAQWNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGAHSVPGHGGVGGHKVFWAKGCVGVATPFQGL--NSVPRCQGCRDFVREALRPRLEN-ASKAESLKSSKNLYMTSAQKDHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 399
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 144 bits (362), Expect = 1.190e-34 Identity = 98/282 (34.75%), Postives = 152/282 (53.90%), Query Frame = 1
Query: 184 IAPDVLRGLGPILWLDVICD*D---IRRPTCCVWRLVCFFSQMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAGEAGVSGVLGLVGGRDV-----------LWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDL--STGQKLD---------------KLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 930
+ P L+G+GPI ++ C + +RR T +++L+ V PC+G+S+QHV + M G+ADV+ S+VRQAQRN+E + L G+R W +A V GL +G +GVSGVLG VGG V W+K C VA+ + PRC C+ F R ++P+++N S A + K++ + QK+D KL TAADL R +E + R++C +P EQG+A+H+FL+ +T++++ S+LP GS+ R
Sbjct: 165 LGPTKLKGVGPITSINGHCVRNHDALRRFTAI--GAEDDLTELLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGL--NSVPRCQGCRGFVREALRPRLQN-ASKAESLKSSKNIYMTRAQKVDVTIVSAPQRVPRITSKLWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 441
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 143 bits (360), Expect = 2.130e-34 Identity = 96/280 (34.29%), Postives = 150/280 (53.57%), Query Frame = 1
Query: 184 IAPDVLRGLGPILWLDVICD*DIRRPTCCVWRLVCF-----FSQMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAGEAGVSGVLGLVGGRDV-----------LWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDL--STGQKLD-----------KLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 930
+ P L+G+GPI + + R + R +++L+ V PC+G+S+QHV + M G+ADV+ S+VRQAQRN+E + L G+R W +A V GL +G +GVSGVLG VGG V W+K C VA+ + PRC C+ F R ++P+++N S A + K++ ++ QK+D KL TAA L A R +E + R++C +P EQG+A+H+FL+ +T++++ S+LP GS+ R
Sbjct: 258 LGPTKLKGVGPIT--SITFNGHCVRNHDALRRFTAIGAEDDLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGL--NSVPRCQGCRGFVREALRPRLEN-ASKAESLKSSKNIYMTSAQKVDETIVLAPQRDHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 532
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 2.460e-13 Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 334 RGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAG---DRWGDACVRGLTAGEAG-VSGVLGLVGGRDVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDK-----DLSTGQK 729
RG+ R H+ + +D+ + + +VVRQA R +E + DRW A VRG+ AG G VSGV+GLVG DVLWS+ C A+ + G PRC CK+F+R + P+ + A KHT K ++ST QK
Sbjct: 5 RGVCRSHMFEDKDVPLETVAAFGTVVRQALRILEKVPAILQPHDRDRWQHADVRGVLAGPNGHVSGVMGLVGREDVLWSRKCTGFATPSYGRTGV--PRCTHCKDFYRRGMTPRTAH----AAKHTPAKKTRVSEMSTAQK 139 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig846.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig846.10.2 >prot_P-littoralis_Contig846.10.2 ID=prot_P-littoralis_Contig846.10.2|Name=mRNA_P-littoralis_Contig846.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=214bp MLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLback to top mRNA from alignment at P-littoralis_Contig846:93312..94481+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig846.10.2 ID=mRNA_P-littoralis_Contig846.10.2|Name=mRNA_P-littoralis_Contig846.10.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1170bp|location=Sequence derived from alignment at P-littoralis_Contig846:93312..94481+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig846:93312..94481+ >mRNA_P-littoralis_Contig846.10.2 ID=mRNA_P-littoralis_Contig846.10.2|Name=mRNA_P-littoralis_Contig846.10.2|organism=Pylaiella littoralis U1_48|type=CDS|length=642bp|location=Sequence derived from alignment at P-littoralis_Contig846:93312..94481+ (Pylaiella littoralis U1_48)back to top |