mRNA_P-littoralis_Contig846.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig846.1.1
Unique NamemRNA_P-littoralis_Contig846.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 3.510e-50
Identity = 76/119 (63.87%), Postives = 87/119 (73.11%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCGD 357
            G+C ELRI STS  +F E+RGHGGNLYFE TIVTSWD   +KPQE Y GGRSF+ CVSE+L  +D            TCA  + GECRMDIIDSEMGYLGY  SE+YG+TWKVRG+C D
Sbjct:    5 GNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGED------------TCAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.920e-46
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCGD 357
            GDCDELRI+ST   ++ E+RGHGG++YF  T+VTSWDT  KKPQE Y GGRSF+NCVSE L            E+C   AK D+GECRMDII+SEMGY+G+ ++ESYG+TWKVRG+C D
Sbjct:   42 GDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKL----------TGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 2.760e-45
Identity = 75/119 (63.03%), Postives = 86/119 (72.27%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCGD 357
            G+C ELRI STS  +F E+RGHGGNLYFE TIVTSWD   +KPQE Y  GRSF+ CVSE+L  +D            TCA  + GECRMDIIDSEMGYLGY  SE+YG+TWKVRG+C D
Sbjct:   76 GNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGED------------TCAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 5.010e-44
Identity = 76/127 (59.84%), Postives = 90/127 (70.87%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWK--------VRGYCGD 357
            GDC++LRI+ST S +F E+RGHGG+LYFE TIVTSWDT  K+PQE Y GGRSF+NCVSE L  DD          C   AK + GECRMDII+SE+ YLGY +SESYG+TWK        VRG+C D
Sbjct:   63 GDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDD----------CEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.450e-43
Identity = 73/119 (61.34%), Postives = 86/119 (72.27%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCGD 357
            GDCDELRI+ST   +F E+R HGG++YFE TIVTSWDT  K PQ  Y GGRSF+NCVSE L            E C   A+ + GECRMDII+SE+GYLGY +SESYG+TWKVRG+C D
Sbjct:  151 GDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKL----------TGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.990e-43
Identity = 75/119 (63.03%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCGD 357
            GDC++LRI+ST S +F E+RGHGG+LYFE TIVTSWDT  K+PQE Y  GRSF+NCVSE L  DD          C   AK + GECRMDII+SE+ YLGY +SESYG+TWKVRG+C D
Sbjct:  514 GDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDD----------CEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.200e-42
Identity = 71/118 (60.17%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCG 354
            GDCDELRI+ST   ++ E+RGHGG++YF  T+VTSWDT  K+PQE Y GGRSF+NCVSE L            E+C   AK D GECRMDII+SEMGY+G+ +SESYG+TWKVR   G
Sbjct:   87 GDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKL----------TGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAG 194
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 8.440e-33
Identity = 63/120 (52.50%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCGDR 360
            GD DELR+ STS + F  LR HGG+L F  T V SWDT    P E  T GRS+++ +SE++ D+DE        +C   AK   GE RMDI  SE+GYLGY +SESYG+TWKVRG+C D+
Sbjct:   20 GDADELRLLSTS-ETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDE--------TCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDK 130
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 8.550e-32
Identity = 63/119 (52.94%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCGD 357
            GD   LRI+ST S+++ E+RGHGG+L F  T VTSWDT EKK    Y   RSF+ CVSE L D  + C  +        A    GECRMDII SEMG +GY  +ESYG++WKVRGYC +
Sbjct:  467 GDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGH--------AVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577
[Close]
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.600e-31
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:    1 GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGGRSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLGYPESESYGVTWKVRGYCGDR 360
            GD DELR+ STS   +  LR +GG+L F  T V SWDT    P  V T GRS+++ VSE++ D+DE C  +        AK   GE RMDI +SE+GYLG+ +SESYG+TWKVRG+C D+
Sbjct:  130 GDADELRLLSTSD-TYINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDGRSYISAVSEIVTDEDESCEGH--------AKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDK 240
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig846.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZV0_ECTSI3.510e-5063.87Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FIU4_ECTSI1.920e-4661.34Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI2.760e-4563.03Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE5.010e-4459.84MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LRM4_ECTSI1.450e-4361.34Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D8LC73_ECTSI1.990e-4363.03Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE1.200e-4260.17MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KES9_9PHAE8.440e-3352.50MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A6H5JNF5_9PHAE8.550e-3252.94MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LHA2_ECTSI2.600e-3150.83Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig846contigP-littoralis_Contig846:23751..31508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LC73
PFAMsWSC
Model size363
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.26e-44
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size363
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791711.0124397-CDS-P-littoralis_Contig846:23750..238461680791711.0124397-CDS-P-littoralis_Contig846:23750..23846Pylaiella littoralis U1_48CDSP-littoralis_Contig846 23751..23846 -
1680791711.0283883-CDS-P-littoralis_Contig846:30710..309231680791711.0283883-CDS-P-littoralis_Contig846:30710..30923Pylaiella littoralis U1_48CDSP-littoralis_Contig846 30711..30923 -
1680791711.0380986-CDS-P-littoralis_Contig846:31454..315081680791711.0380986-CDS-P-littoralis_Contig846:31454..31508Pylaiella littoralis U1_48CDSP-littoralis_Contig846 31455..31508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig846.1.1prot_P-littoralis_Contig846.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig846 23751..31508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig846.1.1

>prot_P-littoralis_Contig846.1.1 ID=prot_P-littoralis_Contig846.1.1|Name=mRNA_P-littoralis_Contig846.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
GDCDELRIESTSSKNFQELRGHGGNLYFEKTIVTSWDTVEKKPQEVYTGG
RSFVNCVSELLDDDDEFCTTYNQESCTTCAKGDKGECRMDIIDSEMGYLG
YPESESYGVTWKVRGYCGDR*
back to top

mRNA from alignment at P-littoralis_Contig846:23751..31508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig846.1.1 ID=mRNA_P-littoralis_Contig846.1.1|Name=mRNA_P-littoralis_Contig846.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7758bp|location=Sequence derived from alignment at P-littoralis_Contig846:23751..31508- (Pylaiella littoralis U1_48)
GGCGACTGTGACGAGCTACGGATAGAATCCACAAGCTCAAAGAACTTCCA
AGAGGTGATGAGCCCTGGGGCATACGTTCGACGACTACCACACAGCAAGT
ATACATACTAGTGTAGAGACAAGTTGTTGCCAGAGGCAGGCCGTTGGACA
ATCTTTGGCCTTAGCAGCGTGTTGAAAATACAGTTTGTCAAGGAAAACTC
GTCACGTCTGTGTCCGTGTCCGGTTGTCGACCTAGCCTATGCCGGCCAAC
GTCTCCATTGGCCTTCATTGCCACGATTGCATTTCACCGCTTTGCATCAT
GTCGCGGCAGCCACCCCAATCCCGTAGAGTCCCATGATATACCCATACCG
CACCGTTTCTCGTTTCCTCTCGTGCGTATCACAACGTTGCACGCGAAGCT
TTTCATACCCCGCCGATTGCCCTTGGAGCGGAACGTGTAAAACACGCGTA
GAGTATCCCCCGCCGATGAATCTCTACCGTAGAGGGAAGGGGGGAATCTC
GCAAGCCTACAGCCTGGTGAACTTACTATATCGAGACGCTCATAATAGTG
CTGCGATGCGGTGTATTGGCTGCATGTTGTGACAGCTCCGTGGGCACGGT
GGCAACCTGTACTTCGAAAAAACTATCGTCACGTCCTGGGACACGGTCGA
GAAGAAACCGCAGGAGGTGTACACAGGTGGAAGGTCTTTCGTGAATTGCG
TATCCGAACTGTTGGATGACGACGACGAGTTCTGCACCACCTACAACCAG
GAATCCTGCACTACTTGCGCAAAAGGCGATAAGGGAGAGTGCCGCATGGT
GAGAGAGGGTGATATTTTCGCCTCGACGTGAAATACAGGGGTCATCAGCC
TTCCTCACCGAAACGTACGTAAGAGATTGTCTCGCCCCTCGGCTGTTTTT
TACAACGATAGTGGGGGGTGTTCGATACTGGGGCTAAGCTCTAGCTAGGG
GTTGTGTGGAGATGTGGGCATCTCGGCCACACGGGCCGAGGTAGGAAACG
TTCGTTGTATTATTGACCTCGGAGGACACGAAGACCAGAGAAGATGAAGA
GTATCAAAGCAGAGACCTAAAGCAGAGTGACGTGGATGCGGCACATCCAT
CACGGAATCACTCCGTCACCAATCCAATGACCCGAATCTCCCACCATGCC
AAGATACTCCGGGGAAACTACCCAGAAACTTCCCCGAATGTCGTAACCTA
CCGACTGCAATCTACTTCGTATGTAGTAGTAGATAGATATCCAGTATCCA
TCATACTATGCTACGAGGACACCCAATGTATCTTTCAGCCCCCCTGCTCG
TATGCATCGTAATGATACGACAAATCAAAACATTTCCACCTGCACCCCAA
TATCTCCGAAACATCAAATCACTTCTTGTTGTATACCATGAACCACACCA
GGTAAAACGGCGGATCAAGATTTAATTTCCGAATTCCAAATGATACAAAC
AACGCCTTTTCTTTCCGAAAATAGCTCCTCCTTATGCGTCGAAATACAAA
CGGCACTAGTAACAGAAAAACTCTCCAACAATCATTTCTTCAAGTGACCA
TGTTGTTTACCGACTATTATTGTATGAGAAAATCAGAATCCAACACAAAA
ATACCAGTGGTGCACGAAGCACCATCACATGCCGCACGAATAAACAAACT
GAAATTAAGGAAACAAAACGGAGATTTTCATGGACTTCCCGTCATCATGT
TAGAAGATGTAAGGAAATCCTATTTTATTTCATGAACAGAGTTAATTCAT
GTCAGATTCATCTGCTTACGGCCCCCCTGCCGTCGTAGCGTCCCGGAACG
AACTTGAGCCTAAAATTTGGGAAATATCCTGCAACAACCTTCAAATTTAA
ATTGCTGCCGCAATGAAAACGCGGTTAGATGCCTCATTTGCAAACAAATT
ATCTCCTGTACCAACTGCTGTGACTAGCTGTGAGAGGGATCATGTCAAGA
TCCACATCAACCCCCCCATGATTTTCGGAGCAGTTGATCAGCAGTTGCTT
TACATTTAATTCAAAAGCAGGCCCTGAAAGAAAAAGAAGTTATCCAACGC
AACATCATCACAAAAGTTCGCGCAAAGACGCAACGCTCGAAGACGGGACG
ATGAAAAAGTACGAAAAGTCCATCAAGCCCTTCCGGACCAATACCGGCAA
AATAATTTGTAATATGACGGTGTACGGCCCGACGAGTACTACTTTTCGCA
GGTAAAACGCGAAATATGAAAGATGCAAACACGGAAACAATCCTCCAGAA
CCGAAGAACCAAATAAACTCTTATCCTTCAAAATCCATAATCAAAACAAG
CCTAGAAATCCAAATCCACAAATCAATCAATTTCAAAACAAATCTTTCCT
ACGTACGTTTTTGCCTTGACATCAAACCCAGCGCTTTTGTCCGTTGCCCA
AGCCATTGTTTTTCCGCCCCCCCGCGGTTCACGCTCGCCTCTGCTGCGGC
CACCTTTCGCTTTTCGTTCGTCCGGCTGGCCGCGGCTCGAGCTTGGTGAG
ATTTTTGTCCGCCTGCGGGTGGGGTGAGCACAACTGTCGCTCCCGGGGGA
TTGACTCGGCGATGAAGGGGCAGGTCGCGCACGTTCGGAGGAATGATGGT
GGCACGATTAGTTTCTTCAAATCACACATTCCACAAAAATCAAGTTGACA
CAACAAAACAAAACAAATCAGGGCGCCATAAAATCAGCATCACTACGTCC
TATTACTGGGGAAAATCATACACTACCGATTCCTCTGTCATACCCCCCCC
GGTTTTGCACAGTATAAAGATGACTGCAAAAAGGAAAAAAAATCGGAAGT
TCTCTCTTTATTGGTGATGGAATCGAAGTTTGTTTGTGGTCTGCCGTTGC
TATGGTTTGGGACCTATGTTTGTCGGGGAACTCGTTTGCGAACCGTGCCT
TGCTTCTTACTGATGACTCTCAAAAAAAATCGAAAGTATTACGGTGACTC
GTCTACTCAGTACCCAGTTTATCTGATGCAGAGAGATCATACCTTTGCTG
CTTTTGCTTCACCGAGTTCCCAGTTTTGCTCTGGTGGAATGTAATAAGCG
CAATAGTGCATGGCGGGAATTTAACCCGCGACCTTCTCTTCTGTAAATAT
ATAGTGAAGTCTCGCTTTTAGCTGAGGTCATGTTTCGGTAAACTGCAGTT
CTCTACCGTCAATTTTCACCCACCCTCTTACAAACTTGCTATGAGATCTC
TCACGAAACGATGAAAATCCCACATTACATTCTCGTTCCTGTCAGTTTTG
CTCGTATACCGGCAACCGTTCCAATTGCGGCAGTGTAATATCCCCACCTC
GGTGATTTTGTTGGCTTGAAAACCATCACACACACACCCAGTTCTTCGTA
TCCTCATTCACTTGAACACCCCAATTCCTAGTTCGTTTGCGACACACATG
TCATGTCAGATCGTATCATACAGCAGTCATGACCGAAAAATAACGAATCA
GTGACAAAAGCCAGAATATAAACCAAAGGGCAAGACCAAATCCCAATCCA
GAATCACAGCTTCTGAAAACACAAAACAACAAATCCAAGTCAAAGCCGGG
CAGATGAAAAACATGAGCATGTCGTCACGTGCCTGAGCGGGTCTAGGACC
CTAGTAGGCGGCGTGCTGCTGTTGCTGCTGTTGCTGCTTGAACATCGGCT
GCTGCTGTGTTGTGGTCTTCTCGTGCATGCAGTTCACGATCATCTTGATC
TCCAACGTTCCGTCGCCCTCACAGCAAAATGAATCTACAACTGGCAAAGC
TAGACCCGCCTATCGTGGGCGACGCGTCCTCGCTAGCGTGTTCGATACTG
GGGCTAAGCTCTAGCTAGGGGTTGTGTGGAGATGTGGGCATCTCGGCCAC
ACGGGCCGAGGTAGGAAACGTTCGTTGTATTATTGACCTCGGAGGAAACC
AAGACCAGAGAAGATGAAGAGTATCAAAGCAGAGACCTAAAGCAGAGTGA
CGTGGATGTGGCACATCTATCACGGAATCACTCCGTCACCAATCCAATGA
CCCGAATCTCCCATCATGCCAAGATACTCCGGGGAAACTACCCAGAAACT
TCCCCGAATGTCGTAACCTACCGACTGCAATCTACTTCGTATGTAGTAGT
AGAAAGATATCCAGTATCCATCATACTATGCTACGAGGACACCCAATCTA
TCTTTCAGCCCCCCCGCTCGTATGCATCGTAGTGATACGACAAATCAAAA
TATTTCCACCTGCACCCCAATAACTCCGAAACATCAAATCACTTCTTGTT
GTATACCATGAACCACACCAGGTAAAACGGCGGATCAAGATTTAATTTCC
GAATATCAAATGATACAAACAACGCCTTTTCTTTCCGAAAATAGCTCCTC
CTTTTGCGTCGAAATACAAACGGCACAAGAAACAGAAAAACTCTCCAACT
ATCAACTCTTCAAGTGACCATGTTGTTTACCGACTATTACTGTATGAGAA
AATCAGAATGCAACACAAAAATACCAGTGGTGCACGAAGCACCATCACAT
GCCGCACGCAATAAACAAACTGAAAATAAAGTATACAAAACGGAGATTTT
CATGGACTTCCCGTCATTATGTTAGAAGATGTAAGGAAATCTCCATTTCG
TTTCATGAAGAACAGAGTTAATTCATGTCAGATTCATCTGCTTACGGCCC
CCCTGCCGTCGTAGCGTCCCGGAACGAACTTGAGCCTAAAATTTGGGAAA
TATCCTTCAACCTTCAGATTTAAATTGCTGCCGCAATGAAAACGCGGTTA
GATGCCTCATTTGCAAACAAATTATCTCCTGTACCAACTGCTGTGACTAG
CTGTGAGAGGGATCATGTCAAGATCCACATCAACCCCCCCATGATTTTCG
GAGCAGTTGATCAGAAGTTGCTTTACATTTAATTCAAAAGCAGGCCCTGA
AAGAAAAAGAAGTTATCCAACGCAACATCATCACAAATGTTCGCGCAAAG
ACGCAACGCTCGAAGACGGGACGATGAAAAAGTACGAACGGTCCATCAAG
CCCTTCCGGACCAATACCGGCAAAATAATTTGTAATATGACGGTGTACGG
CCCGACGAGTACTACTTTTCGCAGGTAAAACGCGAAATATGAAAGATGCA
AACATGGAAACAATCCTCCAGAACCGAAGAACCAAATAAACTCTTATCCT
TCAAAATCCAAAAATCAAAACAAGCCTAGAAATCCAAATCCACAAATCAA
TCAATTTCAAAACAAATCTTTCCTACGTACGTTTTTGCCTTGACATCAAA
CCCAGCGCTTTTGTCCGTTGCCCAAGCCATTGTTTTTCCGCCCCCCCGCG
GTTCACGCTCGCCTCTGCTGCGGCCACCTTTCGCTTTTCGTTCGTCCGGC
TGGCCGCGGCTCGAGCTTGGTGAGATTTTTGTCCGCCTGCGGGTGGGGTG
AGCACAACTGTCGCTCCCGGGGGATTGACTCGGCGATGAAGGGGCAGCGC
TTTTGTCCGTTGCCCAAGCCATTGTTTTTCCGCCCCCCCGCGGTTCACGC
TCGCCTCTGCTGCGGCCACCTTTCGCTTTTCGTTCGTCCGGCTGGCCGCG
GCTCGAGCTTGGCGAGATTTTTGTCCGCCTGCGGGTGGGGTGAGCACAAC
TGTCGCTCCCGGGGGATTGACTCGGCGATGAAGGGGCAGGTCGCGCGCGT
TCGGAGGAATAATGGTGGCACGATTAGTTTCTTCAAATCACACATTTCAC
AAAAATCAAGTTGACACAACAAAACAAAACAAGTCAGGGCGCCATAAAAT
CAGCATCACTACGTCCTATTACTGGGGAAAATCATACAATACCGATTCTT
CTGTCATACCCCCCCCGGTTTTGCACAGTATAAAGATGACTGCAAAAAGG
AAAAAAATCGGAAGTTCTCTCTTTATTGGTGATGGAATCGAAGTTTGTTT
GTGGTCTGCCGTTGCTATGGTTTGGGACCTATGTTTGTCGGGGAACTCGT
TTGCGAACCGTGCCTTGCTTCTTACTGATGACTCTCAAAAAAATTCGAAA
GTATTACGGTGACTCGTCTACTCAGTACCCAGTTTATCTGATGCAGAGAG
ATCATACCTTTGCTGCTTTTGCTTCACCGAGTTCCCAGTTTTGCTCTGGT
GGAATGTAATAAGCGCAATAGTGCATGGCGGGAATTTAACCCGCGACCTT
CTCTTCTGTAAATATATAGTGAAGTCTCGCTTTTAGCTGAGGTCATGTTT
TGGTAAACTGCAGTTCTCTACCGTCAATTTTCACCCACCCTCTTACAAAC
TTGCTATGAGATCTCTCACGAAACGATGAAAATCCCACATTACATTCTCG
TTCCTGTCAGTTTTGCTCGTATACCGGCAACCGTTCCAATTGCGGCAGTG
TAATATCCCCACCTCGGTGATTTTGTTGGCTTGAAAACCATCACACACAC
ACCCAGTTCTTCGTATCCTCATTCACTTGAACACCCCAATTCCTAGTTCG
TTTACGACACACATGTCATGTCAGATCGTATCATACAGCAGTCATGACCG
AAAAATAACGAATCAGTGACAAAAGCCAGAATATAAACCAAAGGGCAAGA
CCAAATCCCAATCCAGAATCACAGCTTCTGAAAACATAAAACAACAAATC
CAAGTCAAAGCCGGGCAGATGAAAAACATGAGCATGTCGTCACGTGCCTG
AGCGGGTCTAGGACCCTAGTAGGCGGCGTGCTGCTGTTGCTGCTGTTGCT
GCTTGAACATCGGCTGCTGCTGTGTTGTGGTCTTCTCGTGCATGCAGTTC
ACGATCATCTTGATCTCCAACCTTCCGTCGCCCTCACAGCAAAATGAATC
TACAACTGGCAAAGCTAGACCCGCATATCGTGGGCGACGCGTCTTCGCTA
GCGTGTTCGATACTGGGGCTAAGCTCTAGCTAGGGGTTGTGTGGAGATGT
GGGCATCTCGGCCACACGGGCCGAGGTAGGAAACGTTCGTTGTATTATTG
ACCTCGGAGGAAACAAAGACCAGAGAAGATGAAGAGTATCAAAGCAGAGA
CCTAAAGCAGAGTGACGTGGATGCGGCACATCCATCACGGAATCACTCCG
TCACCAATCCAATGACCCGAATCTCCCATCATGCCAAGATACTCCGGGGA
AACTACCCAGAAACTTCCCCGAATGTCGTAACCTACCGACTGCAATCTAC
TTCGTATGTAGTAGTAGATAGATATCCAGTATCCATCATACTATGCTACG
AGGACACCCAATCTATCTTTCAGGGGGTGCGGAAAATATATGGTTGAGGC
GTCTGAGACACCCGCAGCGGACAGGACAGGGCTGACGTGTCGCCATGCTC
CTGCCAGCACCCTCATTTTTCGATTGGCTGTGAAATCAACCGTTGGATGC
GGTTGGTAAGTCATGTTTGTGCAGAGTGGAGTGTAGGTTTGGAGGCGATC
TGTGCGGAAAGTCAGGCGGGCGAAAGTACAATATGTTTCACAGGTGCTTC
GTTTTGTTCGACAAGAACAGGTACTTGCTACTTTGGGGTTTCCGCAATTC
TGACATTTTGTTGTTGATAGTTTTCTTGTCTGTTTAGCACGCGATGCCCT
CTATGACTCAGCTTTGGGACTGAGATATTTTCACTGACATTACATTGCCT
GTAAGCATGAAGCGTTCACAATGATTCACGTTATTCCCTCCTTCCGACCA
CCTGCTGTACAGGACATTATCGACTCGGAGATGGGCTACCTGGGCTATCC
CGAGTCTGAATCTTACGGCGTCACGTGGAAGGTCCGCGGCTACTGCGGCG
ACAGGTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig846:23751..31508-

>mRNA_P-littoralis_Contig846.1.1 ID=mRNA_P-littoralis_Contig846.1.1|Name=mRNA_P-littoralis_Contig846.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig846:23751..31508- (Pylaiella littoralis U1_48)
GGCGACTGTGACGAGCTACGGATAGAATCCACAAGCTCAAAGAACTTCCA
AGAGCTCCGTGGGCACGGTGGCAACCTGTACTTCGAAAAAACTATCGTCA
CGTCCTGGGACACGGTCGAGAAGAAACCGCAGGAGGTGTACACAGGTGGA
AGGTCTTTCGTGAATTGCGTATCCGAACTGTTGGATGACGACGACGAGTT
CTGCACCACCTACAACCAGGAATCCTGCACTACTTGCGCAAAAGGCGATA
AGGGAGAGTGCCGCATGGACATTATCGACTCGGAGATGGGCTACCTGGGC
TATCCCGAGTCTGAATCTTACGGCGTCACGTGGAAGGTCCGCGGCTACTG
CGGCGACAGGTAG
back to top