mRNA_P-littoralis_Contig84.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.42.1
Unique NamemRNA_P-littoralis_Contig84.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 6.850e-115
Identity = 189/227 (83.26%), Postives = 208/227 (91.63%), Query Frame = 3
Query:  219 TRRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREAETLR 899
            TRRDGR ANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKS+RMER++GAT+DV+FK E+G  + + AE E LLRRSLEEVVLRSRYPR VVSV+IQVIVDDGAVLSAALNAATMALLNAGVEMTG+A+SVTC IT  + GRSVLLDPCK+EE +AAATA +ATLSA GG+LSCHAVG MS+EEYFACCEAA+LGTTAVRSFVRLS EQKV REAET+R
Sbjct:    4 TRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.480e-50
Identity = 112/239 (46.86%), Postives = 152/239 (63.60%), Query Frame = 3
Query:  222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDA-------------IGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREAETLR 899
            R DGRT +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+ D A ++V+++++ G  T + AERE+ +RR+LEE V  +RYPR+V+SVV+QV+ DDG+VLSAA+NA  MAL++AGVEM G+ ++ T   + +             +G   + LDP  SEEA   AT  +A L+ S GIL+    G +  EE FA  EAA     AV  ++R + E KV R+   L+
Sbjct:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 244          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 182 bits (462), Expect = 5.920e-50
Identity = 105/220 (47.73%), Postives = 143/220 (65.00%), Query Frame = 3
Query:  222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKR 881
            R DGR   +IRPLA EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+A GAT++V FK+E G  +    E E++LR + E +++   +PRAVVS+ +QV+ DDGA+L+ A+NA  +AL++AGV M  I  ++TCSI +      + LDP +SE   AAAT   A    + GIL+    G++S E+YFAC E       +V +FVR+S E K  +
Sbjct:    7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSILE---DGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 177 bits (448), Expect = 6.670e-48
Identity = 106/230 (46.09%), Postives = 144/230 (62.61%), Query Frame = 3
Query:  204 MVLGTTRR-DGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREAE 890
            M  G  RR DGR   +IRPL+ EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+ D AT++V FK+E G  T    E E +LR++ E +V    YPRAV+S+ +QV+ DDG++L+ A+NA  +ALL+AG+ M  +  ++TCSI +      + LDP + E   AAAT   A    + GIL+    G++S  +YFAC E       +V SFVR+S E K ++  E
Sbjct:    1 MANGDERRGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSILE---DGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.690e-47
Identity = 102/220 (46.36%), Postives = 143/220 (65.00%), Query Frame = 3
Query:  222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKR 881
            R DGR   +IRPLA EQG+LNRADGS+RF  G TSVLA+V GPA AK  R E+   AT++V FK E G  +    E E++LR++ E ++L   +PRAV+SV +QV+ DDGA+L+ A+NA  +ALL+AGV M GI  ++TC+I +      + LDP  SE   AAAT   A+   S G+L+    G+++  +YFAC E    G  +V +FVR++ E K ++
Sbjct:    8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTILE---DGQLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETKFQK 224          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.700e-45
Identity = 99/222 (44.59%), Postives = 140/222 (63.06%), Query Frame = 3
Query:  222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREA 887
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+V GPA AK  R E+ D ATV+V FKS+ G  T    E E +L+++ + +V    YPRAV+S+ +QV+ DDG++L+ A+NA  +ALL+AG+ M  +  ++TCSI D      + LDP  +E   A A+   A    + GIL+    GL++  +YFA  E       +V SFVR++ E K ++ A
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSILD---DGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A833WKX0_PHYIN (3' exoribonuclease family domain 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WKX0_PHYIN)

HSP 1 Score: 167 bits (422), Expect = 6.970e-44
Identity = 98/225 (43.56%), Postives = 143/225 (63.56%), Query Frame = 3
Query:  222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAV--------LSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQK 872
            R+DGR  N++RP A+EQG L RADGSAR   G+++VLAAVYGP  A++ R E  D AT+DV FK E G +T    E E ++R++   VVL   +PRAV+S+V+QVI D+G++         + A+NA ++AL++AGV M  +  + +CSI D     ++ LDP  +EE EA +    A  S S G+L+C   GL+S E+YFAC EA    + +V +F R+  ++K
Sbjct:   22 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSCSIFD---DGNLYLDPTAAEEEEAVSWVTTARSSTSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 243          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.810e-42
Identity = 98/221 (44.34%), Postives = 134/221 (60.63%), Query Frame = 3
Query:  216 TTRRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVK 878
            T R DGR   +IRPL+ EQ +LNRADGSARF  G +SVLA+V GPA AK  R E+   A+++V FK+E G  T    E E +LR++ E ++    +PRAV+SV +QV+ DDG++LS A+NA  +ALL+AG+ M  +  +VTCSI D        LD   +E   A A+   A    + GIL+    G++S   YFAC E       +V SFVR+S E K +
Sbjct:    7 TRREDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSILD---DGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETKFR 224          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 169 bits (428), Expect = 5.150e-41
Identity = 94/217 (43.32%), Postives = 139/217 (64.06%), Query Frame = 3
Query:  222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQK 872
            R DGR+  +IRPLA EQG+LNRADGSARF  G TSV+A+V GPAPAK  R E  + AT+DV FK+E G  T    E E++LR++ E ++L   +PR V+S+ +QV+ DDG++L+ ++NA  +AL++AG+ M  +  ++TCS+ +      + +DP   E   A AT   A  + +  IL+    G+++ E+YFAC E       +V +FVR+S E K
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITCSVLE---DSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717          
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.990e-41
Identity = 94/226 (41.59%), Postives = 138/226 (61.06%), Query Frame = 3
Query:  210 LGTTRRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREA 887
            + T R DGR  N++RPLA+EQG L RADGSAR   G+++VL AVYGP  AKS R E+   A +DV FK E G +T    E E ++R++ E VV+   +PRAV+S+V+Q +      LS A+NA ++ALL+AGV MT +  S TC +   +   ++ LDP ++EE  + +    A  S S  +L+    GL++ E+YFAC EA      +V +F R+  ++K +  A
Sbjct:    1 MATKRHDGRAGNELRPLASEQGALFRADGSARVAHGSSAVLVAVYGPGQAKSRRSEKLHRAALDVCFKLEKGVLTSKEKEYEQVIRQTFEPVVVTENFPRAVISIVVQHL------LSVAINAVSLALLDAGVPMTSVVTSATCGL---LPDGTLFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFRIVQQKKYEANA 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI6.850e-11583.26RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF16_9STRA1.480e-5046.86Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A067CJ13_SAPPC5.920e-5047.73Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KL27_9STRA6.670e-4846.09Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZII6_9STRA1.690e-4746.36Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TBK6_9STRA3.700e-4544.59Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A833WKX0_PHYIN6.970e-4443.563' exoribonuclease family domain 2 n=1 Tax=Phytoph... [more]
A0A6G0WBP6_9STRA1.810e-4244.34Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZVY3_9STRA5.150e-4143.32U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A5D6XHQ5_9STRA6.990e-4141.59Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:293169..295580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVT2
Preferred nameEXOSC5
PFAMsRNase_PH,RNase_PH_C
Model size1873
Max annot lvl2759|Eukaryota
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Exons2
Evalue4.94e-121
EggNOG OGsCOG0689@1|root,KOG1069@2759|Eukaryota
Ec32 ortholog descriptionRrp46 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-01_002040.1
EC3.6.4.13
Descriptionpolyadenylation-dependent snoRNA 3'-end processing
Cds size699
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791703.8272457-UTR-P-littoralis_Contig84:293168..2941391680791703.8272457-UTR-P-littoralis_Contig84:293168..294139Pylaiella littoralis U1_48UTRP-littoralis_Contig84 293169..294139 -
1680791703.8651617-UTR-P-littoralis_Contig84:295377..2955801680791703.8651617-UTR-P-littoralis_Contig84:295377..295580Pylaiella littoralis U1_48UTRP-littoralis_Contig84 295378..295580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791703.8427973-CDS-P-littoralis_Contig84:294139..2945081680791703.8427973-CDS-P-littoralis_Contig84:294139..294508Pylaiella littoralis U1_48CDSP-littoralis_Contig84 294140..294508 -
1680791703.8548524-CDS-P-littoralis_Contig84:295047..2953771680791703.8548524-CDS-P-littoralis_Contig84:295047..295377Pylaiella littoralis U1_48CDSP-littoralis_Contig84 295048..295377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.42.1prot_P-littoralis_Contig84.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 294140..295377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.42.1

>prot_P-littoralis_Contig84.42.1 ID=prot_P-littoralis_Contig84.42.1|Name=mRNA_P-littoralis_Contig84.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=233bp
MVLGTTRRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPA
PAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRY
PRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITD
AIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFA
CCEAAALGTTAVRSFVRLSTEQKVKREAETLR*
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mRNA from alignment at P-littoralis_Contig84:293169..295580-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.42.1 ID=mRNA_P-littoralis_Contig84.42.1|Name=mRNA_P-littoralis_Contig84.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2412bp|location=Sequence derived from alignment at P-littoralis_Contig84:293169..295580- (Pylaiella littoralis U1_48)
CCGGGTCTTCGCAGTTCGCCGTGCACCCCGCCGGCCTGCGCAACGGAGCA GCAGAGCCATCGCCAATCGATCACCTCATCAAACGAATTCACTCAGCAGC GAGAGAGGTGGCATCAGCCTTGGTTGTAGCCTGGTTGTGCTGAGTGAGTT ATATATCCACCTGCTGCTGCCCCCATCGAGCCAGTCACCCTCTCTCGTCG AACATGGTATTAGGAACAACCCGCAGAGACGGCCGGACAGCGAACCAGAT CCGCCCTCTCGCGGCAGAGCAAGGCATTCTCAACCGAGCGGACGGCTCCG CGCGCTTCGTTCAGGGTAACACCTCCGTCCTCGCGGCCGTCTACGGGCCG GCCCCGGCCAAGTCGGTGAGGATGGAGAGAGCAGACGGTGCGACGGTGGA CGTGAATTTCAAGTCGGAGAACGGAACGATAACGCCGTCGCACGCCGAGC GGGAAGTCCTCTTGCGGAGGTCGCTGGAGGAGGTGGTGTTGAGGTCGAGA TATCCCAGAGCCGTGGTGTCCGTTGTCATTCAGGTGTGTGTGTGTGTGTG TGTTGCACGCGCAAGCGCGCGCGCAAAAGCGCAAGCGTGCGTGATATGCT CGCATCATGACAGCAGTAGCAGATCCAACTCAGCAGCAGTTCTGCACACG CGACACCACCGAGACGAGCGTGAGGAATTGAGCACCCCGCCGTTCGTTGC CTTGCGTGCGTGTGTGCCTCCGTGGTTTGCTTACATACTGGTGCCTGGTA GTCGGCTGCGTGAGCTGAAATGAGTCCATAGCTTTAGGGCTCTATAGCAC CATTATGCGCGGCGAACGGCTACAGCAGCAGGTGGACTTGCGTACATCGG TATCGCCCCTTCGCAGCCGCTGGCGAACGCTTTTGGATTGCGCTCCTACT GCTTCTCGTGCCCGTATCGTACGCAGCACCCCAGCAGAGGCAAACGTTTG ACAACAATCGTGCAGTTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GTAGCTCAGAAGTTACAACATAGTCAAACTCACTTATATTTTTCATGCGT TACAAACACGATACAAAAAAAGGTGATCGTGGATGACGGCGCCGTCCTTA GCGCCGCCCTCAACGCCGCAACCATGGCCCTCCTCAACGCCGGCGTGGAG ATGACGGGTATCGCCATCTCCGTAACCTGCAGCATTACCGATGCGATTGG CGGTCGATCAGTTCTCCTGGACCCGTGCAAATCGGAGGAGGCGGAGGCCG CCGCCACAGCCGCTATCGCCACCCTTTCGGCAAGCGGCGGGATACTGTCG TGCCACGCCGTAGGGTTGATGAGTCGGGAGGAGTACTTCGCGTGCTGCGA GGCGGCCGCGTTGGGCACGACGGCCGTGCGGTCCTTCGTGAGGCTGTCGA CAGAGCAAAAAGTCAAGCGCGAAGCGGAGACTCTGAGATGACGATACGAA TTTGGGTATGTGCATGATATGACTTTCTGCGGCGTACATGGTCGATGACA CTCATTAGCTGCGTGTAGCTTTGGTGTGACATACAGACATGAAAACAGAC ACATACTTCGTATATACAAAATATTGTCGTTCCATGTGTCGTCGTCTGTT GTCGTCCTTATTTTGTTTCTTATCGTGAGGGCTTGAGGCCAACCGCGAGG CAAACTCAAGACCACGTAGCGCCAATAACTTGCGTGAAACCGCAAGTAGT GTTTTCTGGTCGGTGTATTTGAACAACCCCAGATTGCCTATCGCTCCCGT GAAATAGACACACGTTGTTGTGGGCATTATGTACGGTGTTTCGCGTCCTT CTCTGGTTTGTGGGTGTAGAAAGTACGATAGGCGGAGAGACTGAGATGAT ACTTTTGATAGCCTTGGGATTGAGAAGTGTTGACAACCTCGGAGGTGGGG TGTTGTGGTGGCCACACGGCGTTGATGTGGGTTCATGTCTACAGTAGCAG GAAAGCAGATCGCTGCGGTGACTTCCTTTTTGATGCGATGTTCATACCAA GGCAGCAGAGATCGAGTGTGCTTTTTTTTTGCTGGTGTCTTCGCTGGTGG CACTCCTCCCCATTTCTGTTCCGTAGCTCGCCCAAGGCTTTGTCTGGGAT TCTTCGTTAGCTCGCCTCGGAATACAGCAGCTTGTTGCTGATATCTCGTT CATACTCGTAGCTTTGTTGCGGAAAACACTTCTTGCCTTTGCTTTATTGA ATAGCCAAAAATGTATCGAGTCTTATTTGTCCCACAAAACCCCATCAATG CATCCGTGGTCGAACTGGAGCGCGTGCGCGCATCTTGTTCCGTGTCTTGG TTTCGTTTATGGTTACGGCGGTGCTTTGGGTCCATTCCCGTGCCCCTGAG GCACCGTTGTGGTATATTTTTGGCTCCAACGGAATTGAAATTCATCAAAT CTCTCAAACTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:293169..295580-

>mRNA_P-littoralis_Contig84.42.1 ID=mRNA_P-littoralis_Contig84.42.1|Name=mRNA_P-littoralis_Contig84.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=699bp|location=Sequence derived from alignment at P-littoralis_Contig84:293169..295580- (Pylaiella littoralis U1_48)
ATGGTATTAGGAACAACCCGCAGAGACGGCCGGACAGCGAACCAGATCCG
CCCTCTCGCGGCAGAGCAAGGCATTCTCAACCGAGCGGACGGCTCCGCGC
GCTTCGTTCAGGGTAACACCTCCGTCCTCGCGGCCGTCTACGGGCCGGCC
CCGGCCAAGTCGGTGAGGATGGAGAGAGCAGACGGTGCGACGGTGGACGT
GAATTTCAAGTCGGAGAACGGAACGATAACGCCGTCGCACGCCGAGCGGG
AAGTCCTCTTGCGGAGGTCGCTGGAGGAGGTGGTGTTGAGGTCGAGATAT
CCCAGAGCCGTGGTGTCCGTTGTCATTCAGGTGATCGTGGATGACGGCGC
CGTCCTTAGCGCCGCCCTCAACGCCGCAACCATGGCCCTCCTCAACGCCG
GCGTGGAGATGACGGGTATCGCCATCTCCGTAACCTGCAGCATTACCGAT
GCGATTGGCGGTCGATCAGTTCTCCTGGACCCGTGCAAATCGGAGGAGGC
GGAGGCCGCCGCCACAGCCGCTATCGCCACCCTTTCGGCAAGCGGCGGGA
TACTGTCGTGCCACGCCGTAGGGTTGATGAGTCGGGAGGAGTACTTCGCG
TGCTGCGAGGCGGCCGCGTTGGGCACGACGGCCGTGCGGTCCTTCGTGAG
GCTGTCGACAGAGCAAAAAGTCAAGCGCGAAGCGGAGACTCTGAGATGA
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