mRNA_P-littoralis_Contig84.42.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI) HSP 1 Score: 351 bits (901), Expect = 6.850e-115 Identity = 189/227 (83.26%), Postives = 208/227 (91.63%), Query Frame = 3
Query: 219 TRRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREAETLR 899
TRRDGR ANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKS+RMER++GAT+DV+FK E+G + + AE E LLRRSLEEVVLRSRYPR VVSV+IQVIVDDGAVLSAALNAATMALLNAGVEMTG+A+SVTC IT + GRSVLLDPCK+EE +AAATA +ATLSA GG+LSCHAVG MS+EEYFACCEAA+LGTTAVRSFVRLS EQKV REAET+R
Sbjct: 4 TRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA) HSP 1 Score: 184 bits (468), Expect = 1.480e-50 Identity = 112/239 (46.86%), Postives = 152/239 (63.60%), Query Frame = 3
Query: 222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDA-------------IGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREAETLR 899
R DGRT +QIR L A+QGILNRADGS RF GNTSVL AVYGPA + E+ D A ++V+++++ G T + AERE+ +RR+LEE V +RYPR+V+SVV+QV+ DDG+VLSAA+NA MAL++AGVEM G+ ++ T + + +G + LDP SEEA AT +A L+ S GIL+ G + EE FA EAA AV ++R + E KV R+ L+
Sbjct: 6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 244
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC) HSP 1 Score: 182 bits (462), Expect = 5.920e-50 Identity = 105/220 (47.73%), Postives = 143/220 (65.00%), Query Frame = 3
Query: 222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKR 881
R DGR +IRPLA EQG+LNRADGSARF G TSVLA+V GPA AK R E+A GAT++V FK+E G + E E++LR + E +++ +PRAVVS+ +QV+ DDGA+L+ A+NA +AL++AGV M I ++TCSI + + LDP +SE AAAT A + GIL+ G++S E+YFAC E +V +FVR+S E K +
Sbjct: 7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSILE---DGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA) HSP 1 Score: 177 bits (448), Expect = 6.670e-48 Identity = 106/230 (46.09%), Postives = 144/230 (62.61%), Query Frame = 3
Query: 204 MVLGTTRR-DGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREAE 890
M G RR DGR +IRPL+ EQG+LNRADGSARF G TSVLA+V GPA AK R E+ D AT++V FK+E G T E E +LR++ E +V YPRAV+S+ +QV+ DDG++L+ A+NA +ALL+AG+ M + ++TCSI + + LDP + E AAAT A + GIL+ G++S +YFAC E +V SFVR+S E K ++ E
Sbjct: 1 MANGDERRGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSILE---DGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.690e-47 Identity = 102/220 (46.36%), Postives = 143/220 (65.00%), Query Frame = 3
Query: 222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKR 881
R DGR +IRPLA EQG+LNRADGS+RF G TSVLA+V GPA AK R E+ AT++V FK E G + E E++LR++ E ++L +PRAV+SV +QV+ DDGA+L+ A+NA +ALL+AGV M GI ++TC+I + + LDP SE AAAT A+ S G+L+ G+++ +YFAC E G +V +FVR++ E K ++
Sbjct: 8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTILE---DGQLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETKFQK 224
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.700e-45 Identity = 99/222 (44.59%), Postives = 140/222 (63.06%), Query Frame = 3
Query: 222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREA 887
R DGR +IRPL+ EQG+LNRADGSARF G+TSVLA+V GPA AK R E+ D ATV+V FKS+ G T E E +L+++ + +V YPRAV+S+ +QV+ DDG++L+ A+NA +ALL+AG+ M + ++TCSI D + LDP +E A A+ A + GIL+ GL++ +YFA E +V SFVR++ E K ++ A
Sbjct: 10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSILD---DGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A833WKX0_PHYIN (3' exoribonuclease family domain 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WKX0_PHYIN) HSP 1 Score: 167 bits (422), Expect = 6.970e-44 Identity = 98/225 (43.56%), Postives = 143/225 (63.56%), Query Frame = 3
Query: 222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAV--------LSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQK 872
R+DGR N++RP A+EQG L RADGSAR G+++VLAAVYGP A++ R E D AT+DV FK E G +T E E ++R++ VVL +PRAV+S+V+QVI D+G++ + A+NA ++AL++AGV M + + +CSI D ++ LDP +EE EA + A S S G+L+C GL+S E+YFAC EA + +V +F R+ ++K
Sbjct: 22 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSCSIFD---DGNLYLDPTAAEEEEAVSWVTTARSSTSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 243
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.810e-42 Identity = 98/221 (44.34%), Postives = 134/221 (60.63%), Query Frame = 3
Query: 216 TTRRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVK 878
T R DGR +IRPL+ EQ +LNRADGSARF G +SVLA+V GPA AK R E+ A+++V FK+E G T E E +LR++ E ++ +PRAV+SV +QV+ DDG++LS A+NA +ALL+AG+ M + +VTCSI D LD +E A A+ A + GIL+ G++S YFAC E +V SFVR+S E K +
Sbjct: 7 TRREDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSILD---DGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETKFR 224
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA) HSP 1 Score: 169 bits (428), Expect = 5.150e-41 Identity = 94/217 (43.32%), Postives = 139/217 (64.06%), Query Frame = 3
Query: 222 RRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQK 872
R DGR+ +IRPLA EQG+LNRADGSARF G TSV+A+V GPAPAK R E + AT+DV FK+E G T E E++LR++ E ++L +PR V+S+ +QV+ DDG++L+ ++NA +AL++AG+ M + ++TCS+ + + +DP E A AT A + + IL+ G+++ E+YFAC E +V +FVR+S E K
Sbjct: 504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITCSVLE---DSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA) HSP 1 Score: 157 bits (398), Expect = 6.990e-41 Identity = 94/226 (41.59%), Postives = 138/226 (61.06%), Query Frame = 3
Query: 210 LGTTRRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSVRMERADGATVDVNFKSENGTITPSHAEREVLLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGAVLSAALNAATMALLNAGVEMTGIAISVTCSITDAIGGRSVLLDPCKSEEAEAAATAAIATLSASGGILSCHAVGLMSREEYFACCEAAALGTTAVRSFVRLSTEQKVKREA 887
+ T R DGR N++RPLA+EQG L RADGSAR G+++VL AVYGP AKS R E+ A +DV FK E G +T E E ++R++ E VV+ +PRAV+S+V+Q + LS A+NA ++ALL+AGV MT + S TC + + ++ LDP ++EE + + A S S +L+ GL++ E+YFAC EA +V +F R+ ++K + A
Sbjct: 1 MATKRHDGRAGNELRPLASEQGALFRADGSARVAHGSSAVLVAVYGPGQAKSRRSEKLHRAALDVCFKLEKGVLTSKEKEYEQVIRQTFEPVVVTENFPRAVISIVVQHL------LSVAINAVSLALLDAGVPMTSVVTSATCGL---LPDGTLFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFRIVQQKKYEANA 217 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig84.42.1 >prot_P-littoralis_Contig84.42.1 ID=prot_P-littoralis_Contig84.42.1|Name=mRNA_P-littoralis_Contig84.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=233bp MVLGTTRRDGRTANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAback to top mRNA from alignment at P-littoralis_Contig84:293169..295580- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig84.42.1 ID=mRNA_P-littoralis_Contig84.42.1|Name=mRNA_P-littoralis_Contig84.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2412bp|location=Sequence derived from alignment at P-littoralis_Contig84:293169..295580- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig84:293169..295580- >mRNA_P-littoralis_Contig84.42.1 ID=mRNA_P-littoralis_Contig84.42.1|Name=mRNA_P-littoralis_Contig84.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=699bp|location=Sequence derived from alignment at P-littoralis_Contig84:293169..295580- (Pylaiella littoralis U1_48)back to top |