mRNA_P-littoralis_Contig84.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.240e-17 Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 2
Query: 32 VDVGPKV-CDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFPTFL 265
VDV P + D+QPV+ AV SS+I SPS ++P+ CEV I PLIP +L LM+MS+FLDV LMDG DSVPR FFP L
Sbjct: 218 VDVVPTIIADYQPVITAAVASSKIDSPSVVDPSDFCEVVINPLIPQDHLPLMNMSMFLDVGLMDGIDSVPRGDFFPDAL 296
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JKD9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD9_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.920e-16 Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 2
Query: 5 GVVPSE----SGVVDVGP-KVCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
GVVP S VDV P + DFQPVLA A+ SS+++SPS +NP E+EI PL NL LMDMS+FLDV LM G+DSVP F+P
Sbjct: 205 GVVPQSDIFPSIDVDVVPTSIRDFQPVLAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLPLMDMSMFLDVGLMTGQDSVPPGDFYP 293
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.480e-15 Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query: 35 DVGP-KVCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
DV P + DFQP LA A+ SS+++SPS +NP E+EI PL NL LMDMS+FLDV LM+G+DSVP F+P
Sbjct: 211 DVVPTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLPLMDMSMFLDVGLMNGQDSVPPGDFYP 285
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5K690_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K690_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.140e-14 Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 2
Query: 38 VGPKVCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
V + DFQP LA A+ SS+++SPS +NP E+EI PL NL LMD+S+FLDV LM+G+DSVP F+P
Sbjct: 108 VPTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLLLMDISMFLDVGLMNGQDSVPPGDFYP 180
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5KIN4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIN4_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.560e-14 Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 2
Query: 2 NGVVP----SESGVVDVGP-KVCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
+GV+P S S VDV P + DFQP LA A+ SS+++SPS +NP E+EI PL NL LMDMS+FLDV LM+G+DS F+P
Sbjct: 234 SGVIPQNDVSPSIDVDVVPTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLPLMDMSMFLDVGLMNGQDSDQPGDFYP 323
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 2.200e-14 Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 2
Query: 56 DFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
DFQP LA A+ SS+++SPS +NP E+EI PL NL LMDMS+FLDV LM+G+DSVP F P
Sbjct: 219 DFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLPLMDMSMFLDVGLMNGQDSVPPGDFCP 285
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 3.610e-13 Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 2
Query: 32 VDVGPK---VCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFPTFL 265
VDV P + DFQPV+ AV SS IVSP + E+EI PL L +MDMS+FLDV LMDGKD+VP FFP L
Sbjct: 206 VDVDPTPTTIPDFQPVITAAVESSSIVSPPAVELTDFREIEINPLFSQDALPIMDMSMFLDVGLMDGKDTVPPGDFFPDAL 286
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 3.640e-13 Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 2
Query: 32 VDVGPK---VCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFPTFL 265
VDV P + DFQPV+ AV SS IVSP + E+EI PL L +MDMS+FLDV LMDGKD+VP FFP L
Sbjct: 877 VDVDPTPTTIPDFQPVITAAVESSSIVSPPAVELTDFREIEINPLFSQDALPIMDMSMFLDVGLMDGKDTVPPGDFFPDAL 957
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5KHH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH9_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 4.320e-7 Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 2
Query: 32 VDVGPK---VCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGK 226
VDV P + DFQPV+ A+ SS +VSP + E+EI PL ++DMS+FLDV LMDG+
Sbjct: 82 VDVDPTPTTIPDFQPVITAAIESSSVVSPPAVELTDFREIEINPLFSQDESPIIDMSMFLDVGLMDGR 149
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 7.420e-6 Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query: 137 EVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
EVEI L+ L +MDMS+FLDV LMDGKD+VP FFP
Sbjct: 540 EVEINALVSQDELPIMDMSMFLDVGLMDGKDTVPPGDFFP 579 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig84.3.1 >prot_P-littoralis_Contig84.3.1 ID=prot_P-littoralis_Contig84.3.1|Name=mRNA_P-littoralis_Contig84.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp MSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVback to top mRNA from alignment at P-littoralis_Contig84:39611..39901- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig84.3.1 ID=mRNA_P-littoralis_Contig84.3.1|Name=mRNA_P-littoralis_Contig84.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig84:39611..39901- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig84:39611..39901- >mRNA_P-littoralis_Contig84.3.1 ID=mRNA_P-littoralis_Contig84.3.1|Name=mRNA_P-littoralis_Contig84.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig84:39611..39901- (Pylaiella littoralis U1_48)back to top |