mRNA_P-littoralis_Contig84.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.3.1
Unique NamemRNA_P-littoralis_Contig84.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.240e-17
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   32 VDVGPKV-CDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFPTFL 265
            VDV P +  D+QPV+  AV SS+I SPS ++P+  CEV I PLIP  +L LM+MS+FLDV LMDG DSVPR  FFP  L
Sbjct:  218 VDVVPTIIADYQPVITAAVASSKIDSPSVVDPSDFCEVVINPLIPQDHLPLMNMSMFLDVGLMDGIDSVPRGDFFPDAL 296          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JKD9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.920e-16
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 2
Query:    5 GVVPSE----SGVVDVGP-KVCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
            GVVP      S  VDV P  + DFQPVLA A+ SS+++SPS +NP    E+EI PL    NL LMDMS+FLDV LM G+DSVP   F+P
Sbjct:  205 GVVPQSDIFPSIDVDVVPTSIRDFQPVLAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLPLMDMSMFLDVGLMTGQDSVPPGDFYP 293          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.480e-15
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:   35 DVGP-KVCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
            DV P  + DFQP LA A+ SS+++SPS +NP    E+EI PL    NL LMDMS+FLDV LM+G+DSVP   F+P
Sbjct:  211 DVVPTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLPLMDMSMFLDVGLMNGQDSVPPGDFYP 285          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5K690_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K690_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.140e-14
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   38 VGPKVCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
            V   + DFQP LA A+ SS+++SPS +NP    E+EI PL    NL LMD+S+FLDV LM+G+DSVP   F+P
Sbjct:  108 VPTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLLLMDISMFLDVGLMNGQDSVPPGDFYP 180          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5KIN4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIN4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.560e-14
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 2
Query:    2 NGVVP----SESGVVDVGP-KVCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
            +GV+P    S S  VDV P  + DFQP LA A+ SS+++SPS +NP    E+EI PL    NL LMDMS+FLDV LM+G+DS     F+P
Sbjct:  234 SGVIPQNDVSPSIDVDVVPTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLPLMDMSMFLDVGLMNGQDSDQPGDFYP 323          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.200e-14
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 2
Query:   56 DFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
            DFQP LA A+ SS+++SPS +NP    E+EI PL    NL LMDMS+FLDV LM+G+DSVP   F P
Sbjct:  219 DFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLESQDNLPLMDMSMFLDVGLMNGQDSVPPGDFCP 285          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.610e-13
Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 2
Query:   32 VDVGPK---VCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFPTFL 265
            VDV P    + DFQPV+  AV SS IVSP  +      E+EI PL     L +MDMS+FLDV LMDGKD+VP   FFP  L
Sbjct:  206 VDVDPTPTTIPDFQPVITAAVESSSIVSPPAVELTDFREIEINPLFSQDALPIMDMSMFLDVGLMDGKDTVPPGDFFPDAL 286          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.640e-13
Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 2
Query:   32 VDVGPK---VCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFPTFL 265
            VDV P    + DFQPV+  AV SS IVSP  +      E+EI PL     L +MDMS+FLDV LMDGKD+VP   FFP  L
Sbjct:  877 VDVDPTPTTIPDFQPVITAAVESSSIVSPPAVELTDFREIEINPLFSQDALPIMDMSMFLDVGLMDGKDTVPPGDFFPDAL 957          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5KHH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.320e-7
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 2
Query:   32 VDVGPK---VCDFQPVLADAVMSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGK 226
            VDV P    + DFQPV+  A+ SS +VSP  +      E+EI PL       ++DMS+FLDV LMDG+
Sbjct:   82 VDVDPTPTTIPDFQPVITAAIESSSVVSPPAVELTDFREIEINPLFSQDESPIIDMSMFLDVGLMDGR 149          
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.420e-6
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:  137 EVEIEPLIPHGNLALMDMSVFLDVALMDGKDSVPRKIFFP 256
            EVEI  L+    L +MDMS+FLDV LMDGKD+VP   FFP
Sbjct:  540 EVEINALVSQDELPIMDMSMFLDVGLMDGKDTVPPGDFFP 579          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JW31_9PHAE1.240e-1759.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JKD9_9PHAE1.920e-1655.06Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KCR3_9PHAE2.480e-1556.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K690_9PHAE1.140e-1453.42Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KIN4_9PHAE1.560e-1451.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKY9_9PHAE2.200e-1458.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JU31_9PHAE3.610e-1353.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE3.640e-1353.09Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KHH9_9PHAE4.320e-745.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JCK7_9PHAE7.420e-662.50Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:39611..39901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size291
Hectar predicted targeting categoryother localisation
Exons1
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791702.310068-UTR-P-littoralis_Contig84:39610..396301680791702.310068-UTR-P-littoralis_Contig84:39610..39630Pylaiella littoralis U1_48UTRP-littoralis_Contig84 39611..39630 -
1680791702.333083-UTR-P-littoralis_Contig84:39816..399011680791702.333083-UTR-P-littoralis_Contig84:39816..39901Pylaiella littoralis U1_48UTRP-littoralis_Contig84 39817..39901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791702.3230479-CDS-P-littoralis_Contig84:39630..398161680791702.3230479-CDS-P-littoralis_Contig84:39630..39816Pylaiella littoralis U1_48CDSP-littoralis_Contig84 39631..39816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.3.1prot_P-littoralis_Contig84.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 39631..39816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.3.1

>prot_P-littoralis_Contig84.3.1 ID=prot_P-littoralis_Contig84.3.1|Name=mRNA_P-littoralis_Contig84.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
MSSEIVSPSTLNPAAPCEVEIEPLIPHGNLALMDMSVFLDVALMDGKDSV
PRKIFFPTFLV*
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mRNA from alignment at P-littoralis_Contig84:39611..39901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.3.1 ID=mRNA_P-littoralis_Contig84.3.1|Name=mRNA_P-littoralis_Contig84.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig84:39611..39901- (Pylaiella littoralis U1_48)
AAACGGTGTCGTGCCTTCCGAGTCTGGTGTTGTCGATGTGGGACCCAAGG TGTGCGATTTTCAGCCTGTGCTTGCCGATGCTGTCATGTCTTCTGAGATT GTTTCCCCTTCCACTTTGAACCCTGCTGCGCCGTGTGAAGTAGAGATTGA GCCTCTGATCCCCCACGGTAATTTGGCACTGATGGACATGAGCGTGTTTT TGGATGTCGCGCTCATGGATGGTAAAGACTCCGTCCCCCGGAAGATTTTT TTCCCGACTTTCTTGGTGTAGAAGGTGTGCCCGAATTGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:39611..39901-

>mRNA_P-littoralis_Contig84.3.1 ID=mRNA_P-littoralis_Contig84.3.1|Name=mRNA_P-littoralis_Contig84.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig84:39611..39901- (Pylaiella littoralis U1_48)
ATGTCTTCTGAGATTGTTTCCCCTTCCACTTTGAACCCTGCTGCGCCGTG
TGAAGTAGAGATTGAGCCTCTGATCCCCCACGGTAATTTGGCACTGATGG
ACATGAGCGTGTTTTTGGATGTCGCGCTCATGGATGGTAAAGACTCCGTC
CCCCGGAAGATTTTTTTCCCGACTTTCTTGGTGTAG
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