mRNA_P-littoralis_Contig83.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.130.1
Unique NamemRNA_P-littoralis_Contig83.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 6.260e-51
Identity = 83/113 (73.45%), Postives = 100/113 (88.50%), Query Frame = 1
Query:    1 KAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 339
            +AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R+  QDV+E+ FGHMR GLGSHRN
Sbjct:  566 EAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQRNCGQDVIEHCFGHMRQGLGSHRN 678          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.360e-43
Identity = 74/111 (66.67%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 339
            GY  SADDSKLE LMDILRFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N R   QD+VE+R+GHM   LGSH N
Sbjct:   55 GYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLRCIGQDIVEHRYGHMCQCLGSHCN 163          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.170e-31
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVEN 297
             YI SADDSKLEE+MDIL  F++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+  L D P ++N R+  Q   +N
Sbjct:  445 SYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRYIGQASQKN 541          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.350e-31
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTP 252
            GYI S DDSKL+ELMDIL FF++WR +LE + TLGD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S L   P
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKISPLNMFP 84          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 7.630e-30
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 339
            G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++PR+  QD+ E+RF H+R  LG+HRN
Sbjct:   83 GCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRN 198          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.490e-26
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 KAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 339
            + GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+       L    R++ PR   QD++E+RF H+R G G+H+N
Sbjct:  490 RKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDED------LVSGGRFLYPRMFSQDILEHRFAHIRSGRGTHKN 594          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.370e-22
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFV 186
            GYI SADDSKLEELMDILRFF++WR +LE + TLG   WK +FIT++SWTDIRV ILG V
Sbjct:   42 GYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.180e-21
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVS 189
            GYI SAD SKL ELMDILRFF++WR +LE + TLGD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKL-ELMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.950e-17
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    4 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYS 150
            AGYI SADDSKLEELMDILRF  +WR +LE ++TLGD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.010e-11
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   13 ITSADDSKLEELMDILRFFEKWRCNLE----EKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 339
            ITS D   L+ L++IL +F+ W  +L         L D+     F+ + +W D+R++ILGFV+M RY+F DD  +     R   +++   +   D  E RFGH+R   G H+N
Sbjct:  511 ITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDL-----FLPDQTWDDLRLTILGFVAMTRYVFGDDD-WVTEGSRGRYKFMRDWNQASDTCEKRFGHIRANQGCHKN 617          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE6.260e-5173.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE2.360e-4366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.170e-3160.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE4.350e-3165.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE7.630e-3050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.490e-2646.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE4.370e-2271.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE4.180e-2168.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE3.950e-1771.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE2.010e-1134.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:547294..547781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size341
Hectar predicted targeting categoryother localisation
Exons2
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791693.6318758-CDS-P-littoralis_Contig83:547293..5475751680791693.6318758-CDS-P-littoralis_Contig83:547293..547575Pylaiella littoralis U1_48CDSP-littoralis_Contig83 547294..547575 +
1680791693.647149-CDS-P-littoralis_Contig83:547722..5477791680791693.647149-CDS-P-littoralis_Contig83:547722..547779Pylaiella littoralis U1_48CDSP-littoralis_Contig83 547723..547779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.130.1prot_P-littoralis_Contig83.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 547294..547779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.130.1

>prot_P-littoralis_Contig83.130.1 ID=prot_P-littoralis_Contig83.130.1|Name=mRNA_P-littoralis_Contig83.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
KAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYS
WTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENR
FGHMRDGLGSHRN
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mRNA from alignment at P-littoralis_Contig83:547294..547781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.130.1 ID=mRNA_P-littoralis_Contig83.130.1|Name=mRNA_P-littoralis_Contig83.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=488bp|location=Sequence derived from alignment at P-littoralis_Contig83:547294..547781+ (Pylaiella littoralis U1_48)
AAAGCGGGCTACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCAT GGACATCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGA CGACGCTGGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCG TGGACCGACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATA CTTGTTCGAGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGC CCCGCTACGTCAACCCGCGGCACCATTGCCAGGTATCATGTGCACACAGC GTACTATGTTGTGGCTGATTCTGCCTGTGGGTCTAGTGTGCGTCCGGTCC GACTCCGAGGAGCATTTTCTGAAATTGCGTCGACCTCTCCCCCCCCTATT TTCCACCACTTCGCCTTCTAACCCCACAGGATGTCGTGGAGAACCGCTTC GGGCACATGCGCGACGGCCTTGGGTCGCACAGAAACCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:547294..547781+

>mRNA_P-littoralis_Contig83.130.1 ID=mRNA_P-littoralis_Contig83.130.1|Name=mRNA_P-littoralis_Contig83.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig83:547294..547781+ (Pylaiella littoralis U1_48)
AAAGCGGGCTACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCAT
GGACATCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGA
CGACGCTGGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCG
TGGACCGACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATA
CTTGTTCGAGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGC
CCCGCTACGTCAACCCGCGGCACCATTGCCAGGATGTCGTGGAGAACCGC
TTCGGGCACATGCGCGACGGCCTTGGGTCGCACAGAAAC
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