mRNA_P-littoralis_Contig829.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig829.31.1
Unique NamemRNA_P-littoralis_Contig829.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 8.910e-79
Identity = 137/239 (57.32%), Postives = 157/239 (65.69%), Query Frame = 2
Query:  344 MLQCRSLVEVYSDM*FVYNLCFVYTMARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRAPVQD-GFPVSPKGYAPGFRNE*FSHLRVFQLDAAFS*L*MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQKLSTLNSP 1057
            ML+CR+L EVY+D+ FVY + F+Y M  L +DDTPTS+ARRDVT+FFSPQDC+NFLRFTQ Q+MLMLDLL+IP FIRTDCGFVV GRE L   +    FP   K     F         VF     F     G          Q    +   +            GFIDGTVRGIARPK  QRL YNGHKRKHAMKFQGVITPDGLFVDLWGPV GTRH S++L QSGL++K+S LNSP
Sbjct:    1 MLRCRNLFEVYTDIWFVYKIAFIYAMVCLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGMSESCICEVFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKHWQRLLYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHYSFILAQSGLMEKMSVLNSP 239          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 2.970e-70
Identity = 137/240 (57.08%), Postives = 160/240 (66.67%), Query Frame = 2
Query:  362 LVEVYSDM*FVYNLCFVYTMARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRAPVQD-GFPVSPK------GYAPGFRNE*FSHLRVFQLDAAFS*L*MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQKLST-LNSP 1057
            + E Y+DM   YN+ F+YTMA L  DD  T VARRDVT+FFSPQDCINFLRFTQPQIMLMLDLL+IP FIRTDCGF V GRE L   +    FP   K      G +    +E F+ +  F L+  +  L + L            A  ++ +   L        GFIDGTVRGIARP R QR +YNGHKRKHA+KFQGVITPDGLFVD+WGPV+GTRHDSYLL QSGL+QKL+T  NSP
Sbjct:    1 MFEAYTDMWMAYNMAFIYTMASLVTDDAATRVARRDVTNFFSPQDCINFLRFTQPQIMLMLDLLLIPAFIRTDCGFAVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCISETFNWMLHF-LEFKWGWL-LSLDVERLKPRLVEFAEAIYNADCPL----THCWGFIDGTVRGIARPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTRHDSYLLAQSGLMQKLATHSNSP 234          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: D7G148_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G148_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 7.640e-70
Identity = 129/234 (55.13%), Postives = 149/234 (63.68%), Query Frame = 2
Query:  362 LVEVYSDM*FVYNLCFVYTMARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRAPVQD-GFPVSPKGYAPGFRNE*FSHLRVFQLDAAFS*L*MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQKLST-LNSP 1057
            + E Y+D+   YN+ F++TMA L  DD  T VARRDVT+FFSPQDC+NFLR TQPQIMLMLDLL+IP FIRTDCGFVV GRE L   +    FP   K     F        + F     F     G          +    +   +            GFIDGTVRGIARP R QR +YNGHKRKHA+KFQGVITPDGLFVD+WGPV+GTRHDSYLL QSGL+QKL+T  NSP
Sbjct:    1 MFEAYTDIWMAYNMAFIHTMASLVADDVATRVARRDVTNFFSPQDCVNFLRCTQPQIMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICQTFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIARPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTRHDSYLLAQSGLMQKLATHFNSP 234          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 6.230e-66
Identity = 124/214 (57.94%), Postives = 137/214 (64.02%), Query Frame = 2
Query:  419 MARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRAPVQD-GFPVSPKGYAPGFRNE*FSHLRVFQLDAAFS*L*MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQKLSTLNSP 1057
            MARL +DDTPTS+AR D T+FFSPQDC+NFLRFTQ Q+MLMLDLL+IP FIRTDC FVV GRE L   +    FP   K     F          F     F     G          Q    +   +            GFIDGTVRGIARPK  QRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPV GTRHDS++L QSGL++KLS LNSP
Sbjct:    1 MARLELDDTPTSIARSDATAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCEFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSP 214          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: A0A6H5L0K5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K5_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 3.910e-64
Identity = 128/260 (49.23%), Postives = 165/260 (63.46%), Query Frame = 2
Query:  302 RIRDRLARKRQSFLMLQCRSLVEVYSDM*FVYNLCFVYTMARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRAPVQD-GFPVSPK------GYAPGFRNE*FSHLRVFQLDAAFS*L*MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQKLST-LNSP 1057
            R RDR+ARK+++ L++Q +    +Y+ M F  ++  +YT+ RL IDD PT  ARRD  +FFSPQDC+  +RFT+ QI+LML+LL++P  IRTDCGFVVGGRE L   +    FP   +      G +     E F+ +  F +D  +  L + L         +  A  V+     L         FIDGTVRGIARP R+QR FYNG+KRKHA+KFQGV+TPDGLFVDL+G  VGTRHD YLL QS LL+KL T LNSP
Sbjct:   33 RARDRIARKKRALLLMQWQQSYSLYTSMWFASHVAVMYTLGRLAIDDIPTGAARRDEDNFFSPQDCVELMRFTRDQIVLMLELLMVPAIIRTDCGFVVGGREALCVLLYRLAFPCRLEDMRLVFGQSESCICETFNWMLHF-MDFKWGFL-LSLDVQRLVPKLRTFAEAVYNKGCPL----THCWAFIDGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYGAEVGTRHDGYLLAQSALLEKLQTHLNSP 286          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: A0A6H5JM46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM46_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 7.060e-64
Identity = 124/228 (54.39%), Postives = 153/228 (67.11%), Query Frame = 2
Query:  383 M*FVYNLCFVY-TMARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRAPVQD-GFPVSPKGYAPGFRNE*FSHLRVFQLDAAFS*L*MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQKLST-LNSP 1057
            M F  ++  +Y T+  L IDD PT  ARRDV +FFSPQDC+ F+RFT+ QI+LML+LL++P  IRT+CGFVVGGRE L   +    FP   K     FR E   +LR FQLDA      +G+  L+G       A+     SLQ RLSP+TLLG      R  ARP R+QR FYNG+KRKHA+KFQGV+TPDGLFV+L+G VVGTRHD +LL QS LL+KL T +NSP
Sbjct:    1 MWFASHVAVIYITLGLLAIDDIPTGAARRDVDNFFSPQDCVEFMRFTRDQIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPYRLKDMRLVFRPERILYLRDFQLDATLHGFQVGVPPLAGRSTAGTKASYFCGGSLQQRLSPDTLLGL---HRRNCARPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVELYGAVVGTRHDGHLLAQSALLEKLQTHMNSP 225          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: A0A6H5JV22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV22_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.210e-63
Identity = 116/209 (55.50%), Postives = 133/209 (63.64%), Query Frame = 2
Query:  359 SLVEVYSDM*FVYNLCFVYTMARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRA-PVQDGFPVSPKGYAPGFRNE*FSHLRVFQLDAAFS*L*MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPV 982
            ++ +VY+D+ FVYN+ F+Y MARL +DDTPTS+ARRD T+FFSPQDC+NFLRFTQ Q+ML+LDLL+IP FIRTDCGFVV GRE L     +  FP   K     F          F     F     G          Q    +   +            GFIDGTVRGIARPK  QRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPV
Sbjct:    5 TVEQVYTDLWFVYNIAFIYAMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLILDLLLIPAFIRTDCGFVVSGREALWVLQYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPV 213          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 6.550e-62
Identity = 132/282 (46.81%), Postives = 172/282 (60.99%), Query Frame = 2
Query:  236 ASPDPVQVNRTEGSAHAFMSRLRIRDRLARKRQSFLMLQCRSLVEVYSDM*FVYNLCFVYTMARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRAPVQD-GFPVSPK------GYAPGFRNE*FSHLRVFQLDAAFS*L*MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQKLST-LNSP 1057
            ASP P    R   ++H     LRIRDR+ARK+++ L +Q +    +Y+ M F  +   +YT+ RL IDD PT  ARR V +FFSPQDC+ F+RFT+ QI+LML+LL++P  IRT+CGFVVGGRE L   +    FP   K      G +     E F+ +  F +D  +  L + L         +  A  V+     L         FIDGTVRGIARP R++R FYNG+KRKHA+KFQGV+TPDGLFVDL+   VGT HD YLL +S LL+KL T +NSP
Sbjct:   32 ASPAPTDFPR---ASHHVPPSLRIRDRIARKKRALLPMQWQQSYSLYTSMWFASHFAVIYTLGRLAIDDIPTGAARRHVDNFFSPQDCVEFMRFTRDQIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPCCLKDMRLDFGLSESCICETFNWMLHF-MDFKWGFL-LSLDVQRLVPKLRTFAEAVYNKGCPL----THCWAFIDGTVRGIARPIRNKRFFYNGYKRKHAIKFQGVVTPDGLFVDLYDAEVGTTHDGYLLAESTLLEKLQTHMNSP 304          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: A0A6H5JJ08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ08_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.790e-59
Identity = 130/267 (48.69%), Postives = 152/267 (56.93%), Query Frame = 2
Query:  344 MLQCRSLVEVYSDM*FVYNLCFVY-TMARLRIDDTPTSVARRDVTSFFSPQDCINFLRFTQPQIMLMLDLLVIPEFIRTDCGFVVGGREFLRAPVQDGFPVSPKGYAPGFRNE*FS------HLRVFQLDAAFS*L*MGLSALSGCGAYQ------------AAAAQVHRSSLQLRLSPNTLL----------GFIDGTVRGIARPKRDQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQKLSTLNSP 1057
            ML+CR+L EVY+D+ FVYN+ F+Y  MARL +DDTPTS+ARRDVT+FFSPQDC++FLRF Q Q+            I TD  FV        A  +     +P   A       FS       LR  Q          GLS    C A+               +  V R  L L      +           GFIDGTVRGIARPK  QR+FYNGHKRKHAMKFQGVITPDGLFVDLWGPV GTRHDS++L QSGL++KLS LNSP
Sbjct:    1 MLRCRNLFEVYTDIWFVYNIAFIYYAMARLELDDTPTSIARRDVTAFFSPQDCVSFLRFKQSQV------------IYTDIWFVYNIAFIYYAMARLELDDTPTSIARRDVTAFFSPQDCVSFLRFTQSQHPXV---FGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQLHLIEFAEAIFNSCCRLTHCWGFIDGTVRGIARPKYWQRMFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSP 252          
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Match: A0A6H5JR44_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR44_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 8.290e-54
Identity = 90/156 (57.69%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  898 QRTQTETCNEVPRSNHARRAVC*SVGTGCWYTSRQLLARAVRASAEVVDAEQPSDHPYYLYGDPAYSMRNHLLCPYNAAVDGPLTPEMVDLNKRMSHCRVTVEWGFKEMTGKWAFVNMKPQQKFLLSPVALQYRVATLLSNWHSCLNGATKSCNTF 1365
            Q  Q E  +E+PR N+ RR      G   W      +        ++     P+ HPY LYGDPAY + NHL+CP++A+  GPLTPEM D NKRMSHCRVTVEWGFKEMTGKWAFVNMKP QKFLLSPVA QYRV TLLSNWHSC+NG  +    F
Sbjct:   22 QWAQEEARHELPRGNYTRRVFVHLWGPVAWTRHGSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVNMKPPQKFLLSPVAKQYRVGTLLSNWHSCMNGGIEISQYF 177          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig829.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRJ1_9PHAE8.910e-7957.32DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D8LL85_ECTSI2.970e-7057.08DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
D7G148_ECTSI7.640e-7055.13DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KB08_9PHAE6.230e-6657.94DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0K5_9PHAE3.910e-6449.23DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JM46_9PHAE7.060e-6454.39DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV22_9PHAE1.210e-6355.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS57_9PHAE6.550e-6246.81DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5JJ08_9PHAE3.790e-5948.69DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JR44_9PHAE8.290e-5457.69DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig829contigP-littoralis_Contig829:116231..118790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G148
PFAMsDDE_Tnp_4
Model size1623
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.38e-37
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size369
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.9905968-UTR-P-littoralis_Contig829:116230..1167511680791686.9905968-UTR-P-littoralis_Contig829:116230..116751Pylaiella littoralis U1_48UTRP-littoralis_Contig829 116231..116751 -
1680791687.0593045-UTR-P-littoralis_Contig829:117431..1176351680791687.0593045-UTR-P-littoralis_Contig829:117431..117635Pylaiella littoralis U1_48UTRP-littoralis_Contig829 117432..117635 -
1680791687.071915-UTR-P-littoralis_Contig829:118261..1187901680791687.071915-UTR-P-littoralis_Contig829:118261..118790Pylaiella littoralis U1_48UTRP-littoralis_Contig829 118262..118790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.0363142-CDS-P-littoralis_Contig829:116751..1169831680791687.0363142-CDS-P-littoralis_Contig829:116751..116983Pylaiella littoralis U1_48CDSP-littoralis_Contig829 116752..116983 -
1680791687.0475502-CDS-P-littoralis_Contig829:117294..1174311680791687.0475502-CDS-P-littoralis_Contig829:117294..117431Pylaiella littoralis U1_48CDSP-littoralis_Contig829 117295..117431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig829.31.1prot_P-littoralis_Contig829.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig829 116752..117431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig829.31.1

>prot_P-littoralis_Contig829.31.1 ID=prot_P-littoralis_Contig829.31.1|Name=mRNA_P-littoralis_Contig829.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MGLSALSGCGAYQAAAAQVHRSSLQLRLSPNTLLGFIDGTVRGIARPKRD
QRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVVGTRHDSYLLEQSGLLQ
KLSTLNSPQTIRTTCMETLHTA*
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mRNA from alignment at P-littoralis_Contig829:116231..118790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig829.31.1 ID=mRNA_P-littoralis_Contig829.31.1|Name=mRNA_P-littoralis_Contig829.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2560bp|location=Sequence derived from alignment at P-littoralis_Contig829:116231..118790- (Pylaiella littoralis U1_48)
TCGGACTCGATCTCAGATTTTTTTGGATTTAGCAGTAAGGCTGCAGATTT AAGCGGCGTTCCTCGGAACAGCCCTGAAGGTGAAAAGTCTAAGATTTAAC AAAAAAAATATAAAGAATGACGTGTCTGTCAGATGCAGTCTCATTGGCCT GTGTGTACAGGCCCGCCGGAGATGGTCATGCCGCATCTTTTTTGAATTTC TGCGCGGCGAAGCGGCGAACATAACGGCAGCCGCTGCGAGCCCGGACCCG GTGCAGGTTAACCGAACCGAAGGCAGCGCCCACGCCTTCATGTCCCGCCT TCGCATCCGCGACAGGCTAGCGCGCAAAAGACAATCCTTCCTTATGCTTC AGTGCCGCTCTCTGGTCGAAGTCTACTCGGACATGTAGTTTGTCTACAAC CTCTGCTTCGTGTATACCATGGCTCGCCTGCGCATCGATGACACGCCAAC CAGTGTAGCACGGAGAGACGTGACTTCGTTCTTCAGCCCCCAAGACTGCA TCAACTTCCTGCGTTTCACGCAGCCCCAGGTGCGTTTGATTTTGTAAGCG TCGTCGTGTCTCGCCATTGTAAAAGACGGCGGCACTGCTGCTACTGTACT GCTGCCTATATACGAAGTAGACGATAGATACGCTGCAGTTATGCTGCGCT TCTTCTGCTCTCAGTACGGCAGCAACAGAGTAAAGGATATTCGTTGGTTA GCGGCGGGGTCTTAATTCAAATAAGTCAGTGCTGTTCAGCAGTACAACAG TAGTATACGAAGCAGTACACACTACAGCAGTAGCGGGCATCAAAGTACAG AGATTTGAGATGTCCAGCAGCAGCAGCGGTGGTAGTAGAACTGACGATAG TAGTACTGCTACTGCTGTAGTAGCGGTATCAGCTGTTGTAGCAGCTGCAA ATTGATTGTATTTCAGGGCTGACTCGCGGTGGTAGGAGGTTCTTATCCTG TACGTAGTGTCCGTGTTTGTCATGTCCTGCCTGTTTTGAACCACCATGCA CGCTGTTCGATTCGATACCCTACCTCTTCCACCGAGTATCCAACCTCCTC GCGCATCTACTACACACATGTAACATGCCCACAGCAGTACACCCACATAT CACTGCGGTTGCTACTGCTGTCGTCCCTTGAACACGGGCTTGTTTTATCC TGCAGATCATGCTGATGTTGGATCTCCTGGTGATCCCCGAGTTCATTCGA ACCGACTGCGGGTTCGTGGTGGGCGGACGAGAGTTTTTGCGTGCTCCTGT TCAGGATGGCTTTCCCGTGTCGCCTAAAGGATATGCGCCTGGTTTTCGGA ATGAGTGATTCTCGCATTTGCGAGTCTTTCAACTGGATGCTGCATTTTCT TGACTTTAAATGGGGCTTTCTGCTCTCTCTGGATGTGGAGCGTATCAAGC CGCAGCTGCTCAAGTTCACCGAAGCAGTTTACAACTCCGGCTGTCCCCTA ACACACTGCTGGGGTTCATTGATGGAACTGTGCGCGGCATTGCAAGGTAT ATAGTTTATGAAGCTATCACATCGGTTATCAACTTGAAGGAAATCGCAAC GGACATATAGAAACACAACTCATCCTTTGCCCCCCTCAACAGATTCGCAT GTACGACGCGTGTAACGTTTGCTTCATAAGGCTAAATAACGTCGCCGTTC CCCGCTTTGCGCTACACAGTCGCGGCGGAAAGCCGAACCGTAAACATAGT ATCTACAGCGCGGAGGATCAACGACAATAAGATGAACCACGACTACTGCT GTTAGACGTTCGACTTTTTCGTACGCCTCGTTCCCCTGTCCCTCTGATGT GTCTCAGGCCCAAACGCGACCAGCGCCTGTTCTACAACGGACACAAACGG AAACATGCAATGAAGTTCCAAGGAGTAATCACGCCAGACGGGCTGTTTGT TGATCTGTGGGGACCGGTTGTTGGTACACGTCACGACAGCTACTTGCTCG AGCAGTCAGGGCTTCTGCAGAAGTTGTCGACGCTGAACAGCCCTCAGACC ATCCGTACTACTTGTATGGAGACCCTGCATACAGCATGAGAAACCATCTC CTCTGTCCTTACAATGCAGCCGTCGATGGTCCTCTCACGCCCGAGATGGT TGATCTAAACAAGCGTATGAGCCACTGCAGGGTGACGGTAGAGTGGGGAT TCAAGGAGATGACTGGCAAGTGGGCATTCGTTAACATGAAGCCACAGCAG AAGTTTTTGTTGAGTCCGGTAGCGCTGCAGTACAGGGTAGCCACCCTTCT CTCGAACTGGCACTCTTGCCTCAACGGGGCAACGAAATCTTGCAATACTT TCATGTGGAGCCACCCACGCTCGAAGAGTACTTCCAGCGGGTAGGCACCT CGCAAGTGTCGTTGCCATCAAATGGGAGAGGAAGTGGCGTTATTACGTTG TGGTTCTTAAGTACGGGCGCCCGTATGTGCAATTGAGGGTTGTCGTTGTC AAAGTGAAATATTTCGCGGAGTTCAGAGAGATAACCAATGGTCCGAGCCT GAAGTTTTGTAGTGGTCTATGAAGAAGGCATGGTGGTTGAGTCTAAACTC CTACATGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig829:116231..118790-

>mRNA_P-littoralis_Contig829.31.1 ID=mRNA_P-littoralis_Contig829.31.1|Name=mRNA_P-littoralis_Contig829.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig829:116231..118790- (Pylaiella littoralis U1_48)
ATGGGGCTTTCTGCTCTCTCTGGATGTGGAGCGTATCAAGCCGCAGCTGC
TCAAGTTCACCGAAGCAGTTTACAACTCCGGCTGTCCCCTAACACACTGC
TGGGGTTCATTGATGGAACTGTGCGCGGCATTGCAAGGCCCAAACGCGAC
CAGCGCCTGTTCTACAACGGACACAAACGGAAACATGCAATGAAGTTCCA
AGGAGTAATCACGCCAGACGGGCTGTTTGTTGATCTGTGGGGACCGGTTG
TTGGTACACGTCACGACAGCTACTTGCTCGAGCAGTCAGGGCTTCTGCAG
AAGTTGTCGACGCTGAACAGCCCTCAGACCATCCGTACTACTTGTATGGA
GACCCTGCATACAGCATGA
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