mRNA_P-littoralis_Contig828.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig828.27.1
Unique NamemRNA_P-littoralis_Contig828.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.800e-15
Identity = 54/152 (35.53%), Postives = 74/152 (48.68%), Query Frame = 2
Query:    2 GTAGSARKKLPE----MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDK------------LDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 409
            G+   A    PE    +P+ + YP+L++AC WS WSGNTPSEWK+L AS G      + DK            + T  NP+ SP AM                       A  K E +++++  K+KEN+AL  E   TRK+G+AAME  N 
Sbjct:  270 GSGSGANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYF-------ANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESANT 414          
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.080e-14
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = 2
Query:   35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 409
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++ R+A  DKE     KET  T+KKG+AA+E  N 
Sbjct:  117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRLDPNGDALSRRQHF-------AAIKREKEQERKATADKELQESRKETLETKKKGLAALEAANT 234          
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.780e-9
Identity = 44/124 (35.48%), Postives = 60/124 (48.39%), Query Frame = 2
Query:   38 MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 409
            +PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++  +A  +KE     KE   T KKG+AA E  N 
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRLNPNGDALSRRQHF-------AAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAANT 252          
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.520e-8
Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 2
Query:   35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 409
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +     D      NP+ SPA M+                      AA K E +  R+A  DKE +       +  KKG AA+E  N 
Sbjct:  120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRLNPNGDALSRRQHF-------AAIKREKEEERKAAADKE-LQXXXXXALETKKGPAALEAANT 236          
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.450e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2
Query:   35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSP 205
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G     K  D      NP+SSP
Sbjct:  117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173          
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.210e-8
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 2
Query:   35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPA 208
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA
Sbjct:  105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPA 162          
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.920e-7
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 2
Query:   35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 217
            E+ E W++P L+   A+SPWSG  PSEWK+L +S G     K  D      NP+ SPA M+
Sbjct:   31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FV02_ECTSI5.800e-1535.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGF1_9PHAE6.080e-1438.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE4.780e-935.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE2.520e-834.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE3.450e-847.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7S4_9PHAE5.210e-846.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVE3_9PHAE1.920e-744.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig828contigP-littoralis_Contig828:62605..63151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size547
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791685.7598999-UTR-P-littoralis_Contig828:62604..626411680791685.7598999-UTR-P-littoralis_Contig828:62604..62641Pylaiella littoralis U1_48UTRP-littoralis_Contig828 62605..62641 +
1680791685.7853913-UTR-P-littoralis_Contig828:63004..631511680791685.7853913-UTR-P-littoralis_Contig828:63004..63151Pylaiella littoralis U1_48UTRP-littoralis_Contig828 63005..63151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791685.7718108-CDS-P-littoralis_Contig828:62641..630041680791685.7718108-CDS-P-littoralis_Contig828:62641..63004Pylaiella littoralis U1_48CDSP-littoralis_Contig828 62642..63004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig828.27.1prot_P-littoralis_Contig828.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig828 62642..63004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig828.27.1

>prot_P-littoralis_Contig828.27.1 ID=prot_P-littoralis_Contig828.27.1|Name=mRNA_P-littoralis_Contig828.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGS
NPLSSPAAMAAAASARKMLNNNGDSSSRRQTEAAAKAEADRLRRAQKDKE
NMALMKETEVTRKKGVAAME*
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mRNA from alignment at P-littoralis_Contig828:62605..63151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig828.27.1 ID=mRNA_P-littoralis_Contig828.27.1|Name=mRNA_P-littoralis_Contig828.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=547bp|location=Sequence derived from alignment at P-littoralis_Contig828:62605..63151+ (Pylaiella littoralis U1_48)
TGGGACTGCGGGTAGTGCTAGGAAGAAGTTGCCGGAGATGCCTGAGGGGT GGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTCCCCCTGGAGCGGG AACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCGGCGGGAAACCCGA GGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCAAACCCACTCTCCA GCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAAAATGCTCAACAAC AATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAGCAGCGAAAGCGGA GGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAGAACATGGCGCTCA TGAAAGAGACAGAGGTGACGAGGAAGAAgGGTGTCGCAGCCATGGAATAA ATAAATGTCAAACGCGGTCGAGCTAAACAACCACATGAAGCGGATGGTGG AGCTTCGGGAAGTCGAAACTAATCTCAAGAAGGACGAGGCCCAGGCGGCG AAGCGGGCCCGAAAGATCGAGTCCCTCGAGAAGAGATGCCATATGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig828:62605..63151+

>mRNA_P-littoralis_Contig828.27.1 ID=mRNA_P-littoralis_Contig828.27.1|Name=mRNA_P-littoralis_Contig828.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig828:62605..63151+ (Pylaiella littoralis U1_48)
ATGCCTGAGGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTC
CCCCTGGAGCGGGAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCG
GCGGGAAACCCGAGGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCA
AACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAA
AATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAG
CAGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAG
AACATGGCGCTCATGAAAGAGACAGAGGTGACGAGGAAGAAgGGTGTCGC
AGCCATGGAATAA
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