mRNA_P-littoralis_Contig828.27.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 5.800e-15 Identity = 54/152 (35.53%), Postives = 74/152 (48.68%), Query Frame = 2
Query: 2 GTAGSARKKLPE----MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDK------------LDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 409
G+ A PE +P+ + YP+L++AC WS WSGNTPSEWK+L AS G + DK + T NP+ SP AM A K E +++++ K+KEN+AL E TRK+G+AAME N
Sbjct: 270 GSGSGANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYF-------ANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESANT 414
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 6.080e-14 Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = 2
Query: 35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 409
E+PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA M+ AA K E ++ R+A DKE KET T+KKG+AA+E N
Sbjct: 117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRLDPNGDALSRRQHF-------AAIKREKEQERKATADKELQESRKETLETKKKGLAALEAANT 234
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 4.780e-9 Identity = 44/124 (35.48%), Postives = 60/124 (48.39%), Query Frame = 2
Query: 38 MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 409
+PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA M+ AA K E ++ +A +KE KE T KKG+AA E N
Sbjct: 137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRLNPNGDALSRRQHF-------AAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAANT 252
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 2.520e-8 Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 2
Query: 35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 409
E+PE W++P L++ A+SPWSG PSEWK+L +S G + D NP+ SPA M+ AA K E + R+A DKE + + KKG AA+E N
Sbjct: 120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRLNPNGDALSRRQHF-------AAIKREKEEERKAAADKE-LQXXXXXALETKKGPAALEAANT 236
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 3.450e-8 Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2
Query: 35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSP 205
E+PE W++P L++ A+SPWSG PSEWK+L +S G K D NP+SSP
Sbjct: 117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 5.210e-8 Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 2
Query: 35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPA 208
E+PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA
Sbjct: 105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPA 162
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.920e-7 Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 2
Query: 35 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 217
E+ E W++P L+ A+SPWSG PSEWK+L +S G K D NP+ SPA M+
Sbjct: 31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS 91 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig828.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig828.27.1 >prot_P-littoralis_Contig828.27.1 ID=prot_P-littoralis_Contig828.27.1|Name=mRNA_P-littoralis_Contig828.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSback to top mRNA from alignment at P-littoralis_Contig828:62605..63151+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig828.27.1 ID=mRNA_P-littoralis_Contig828.27.1|Name=mRNA_P-littoralis_Contig828.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=547bp|location=Sequence derived from alignment at P-littoralis_Contig828:62605..63151+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig828:62605..63151+ >mRNA_P-littoralis_Contig828.27.1 ID=mRNA_P-littoralis_Contig828.27.1|Name=mRNA_P-littoralis_Contig828.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig828:62605..63151+ (Pylaiella littoralis U1_48)back to top |