mRNA_P-littoralis_Contig819.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig819.28.1
Unique NamemRNA_P-littoralis_Contig819.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.010e-22
Identity = 78/215 (36.28%), Postives = 115/215 (53.49%), Query Frame = 2
Query:  164 GTAGGARKMLPE----MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDK------------LDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAAKRARKIESLEKRCHMAGGRDAALTSRLHQLLSE 760
            G+  GA    PE    +P+ + YP+L++AC WS WSGNTPSEWK+L AS G      + DK            + T  NP+ SP AM                       A  K E +++++  K+KEN+AL  E   TRK+G+AAME  N +  EL+ ++K+MV+L+E E+NL      AA+R  KIE+LE++  +A      + ++L+ LL E
Sbjct:  270 GSGSGANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYF-------ANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESANTHVGELSSNIKKMVQLQE-ESNL------AARRKDKIEALERKLMLAISDPNMVKAQLNALLDE 470          
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.300e-15
Identity = 65/188 (34.57%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAAKRARKIESLEKRCHMAGGRDAALTSRLHQLLSE 760
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +     D      NP+ SPA M+                      AA K E +  R+A  DKE +       +  KKG AA+E  N +   +  +MKRMVEL+E E       A   KR  KI++LEK   +  G +    + L  LL+E
Sbjct:  120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRLNPNGDALSRRQHF-------AAIKREKEEERKAAADKE-LQXXXXXALETKKGPAALEAANTHVDSIGANMKRMVELKEAE-------AVGIKRENKIKALEKIIMLRLGDETENRAELEFLLNE 292          
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.580e-15
Identity = 66/187 (35.29%), Postives = 91/187 (48.66%), Query Frame = 2
Query:  200 MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAAKRARKIESLEKRCHMAGGRDAALTSRLHQLLSE 760
            +PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++  +A  +KE     KE   T KKG+AA E  N +   +   MKRMVEL+E E       A   KR  KI++LEK+  +  G +    + L  LL E
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRLNPNGDALSRRQHF-------AAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAANTHVETIGADMKRMVELKEAE-------AVGIKRENKIKALEKKIVLRLGDETENRAELVFLLIE 308          
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.250e-14
Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVN 574
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++ R+A  DKE     KET  T+KKG+AA+E  N N
Sbjct:  117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRLDPNGDALSRRQHF-------AAIKREKEQERKATADKELQESRKETLETKKKGLAALEAANTN 235          
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.690e-12
Identity = 64/198 (32.32%), Postives = 88/198 (44.44%), Query Frame = 2
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRK----------KGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAAKRARKIESLEKRCHMAGGRDAALTSRLHQLLSE 760
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA                                   R+A  DKE     KE   T+K          KG+AA+E  N +   +  +MKRMVEL       K+ EA   KR  KI++LEKR  +  G +    + L  L +E
Sbjct:  105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPAE----------------------------------RKAATDKELQEARKEALETKKXXXXXXXXXKKGLAALEAANTHIETIGANMKRMVEL-------KQAEAVGIKRENKIKALEKRIMLRLGDETENRAELEFLPNE 261          
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.480e-7
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSP 367
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G     K  D      NP+SSP
Sbjct:  117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173          
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 7.310e-7
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 2
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 379
            E+ E W++P L+   A+SPWSG  PSEWK+L +S G     K  D      NP+ SPA M+
Sbjct:   31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FV02_ECTSI1.010e-2236.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJW8_9PHAE6.300e-1534.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE7.580e-1535.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF1_9PHAE9.250e-1438.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7S4_9PHAE1.690e-1232.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE1.480e-747.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KVE3_9PHAE7.310e-744.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig819contigP-littoralis_Contig819:111741..112577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size837
Hectar predicted targeting categoryother localisation
Exons1
Cds size717
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791672.334477-UTR-P-littoralis_Contig819:111740..1117991680791672.334477-UTR-P-littoralis_Contig819:111740..111799Pylaiella littoralis U1_48UTRP-littoralis_Contig819 111741..111799 -
1680791672.3635173-UTR-P-littoralis_Contig819:112516..1125771680791672.3635173-UTR-P-littoralis_Contig819:112516..112577Pylaiella littoralis U1_48UTRP-littoralis_Contig819 112517..112577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791672.348091-CDS-P-littoralis_Contig819:111799..1125161680791672.348091-CDS-P-littoralis_Contig819:111799..112516Pylaiella littoralis U1_48CDSP-littoralis_Contig819 111800..112516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig819.28.1prot_P-littoralis_Contig819.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig819 111800..112516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig819.28.1

>prot_P-littoralis_Contig819.28.1 ID=prot_P-littoralis_Contig819.28.1|Name=mRNA_P-littoralis_Contig819.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=239bp
MVDVEEQRKEDDGVTSSSGVGSGSAAGLVTGGNAGTAGGARKMLPEMPEG
WLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLS
SPAAMAAAASARKMLNNNGDSSSRRQTEAAAKAEADRLRRAQKDKENMAL
MKETEVTRKKGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAA
KRARKIESLEKRCHMAGGRDAALTSRLHQLLSEESGDA*
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mRNA from alignment at P-littoralis_Contig819:111741..112577-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig819.28.1 ID=mRNA_P-littoralis_Contig819.28.1|Name=mRNA_P-littoralis_Contig819.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=837bp|location=Sequence derived from alignment at P-littoralis_Contig819:111741..112577- (Pylaiella littoralis U1_48)
GACCTCAGGAAGTTCAAGGCAGGTCTGGGATTGTGCGGACGTGCTTGACG GGTGCGATTTCATGGTCGATGTCGAGGAACAGAGGAAGGAGGATGACGGC GTTACCTCAAGCAGTGGCGTTGGCAGTGGATCAGCGGCGGGTCTCGTCAC CGGTGGCAATGCTGGGACTGCGGGTGGTGCTAGGAAGATGTTGCCGGAGA TGCCTGAGGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTCC CCCTGGAGCGGGAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCGG CGGGAAACCCGAGGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCAA ACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAAA ATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAGC AGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAGA ACATGGCGCTCATGAAAGAGACAGAGGTGACGAGGAAGAAGGGTGTCGCA GCCATGGAAGAGATAAATGTCAACGCGGTGGAGCTAAACAAGCACATGAA GCGGATGGTGGAGCTTCGGGAAGACGAAACTAATCTCAAGAAGGACGAGG CCCAGGCGGCGAAGCGGGCCCGAAAGATCGAGTCCCTCGAGAAGAGATGC CATATGGCCGGCGGTCGGGACGCGGCGCTTACTTCAAGGCTACATCAGTT ACTGTCCGAGGAAAGTGGTGACGCATGAGACAGCCGTAGTCGTCTCGTTT GGACCTTCCCCCAGCCAGTTGGTCATGAGGAGAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig819:111741..112577-

>mRNA_P-littoralis_Contig819.28.1 ID=mRNA_P-littoralis_Contig819.28.1|Name=mRNA_P-littoralis_Contig819.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=717bp|location=Sequence derived from alignment at P-littoralis_Contig819:111741..112577- (Pylaiella littoralis U1_48)
ATGGTCGATGTCGAGGAACAGAGGAAGGAGGATGACGGCGTTACCTCAAG
CAGTGGCGTTGGCAGTGGATCAGCGGCGGGTCTCGTCACCGGTGGCAATG
CTGGGACTGCGGGTGGTGCTAGGAAGATGTTGCCGGAGATGCCTGAGGGG
TGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTCCCCCTGGAGCGG
GAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCGGCGGGAAACCCG
AGGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCAAACCCACTCTCC
AGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAAAATGCTCAACAA
CAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAGCAGCGAAAGCGG
AGGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAGAACATGGCGCTC
ATGAAAGAGACAGAGGTGACGAGGAAGAAGGGTGTCGCAGCCATGGAAGA
GATAAATGTCAACGCGGTGGAGCTAAACAAGCACATGAAGCGGATGGTGG
AGCTTCGGGAAGACGAAACTAATCTCAAGAAGGACGAGGCCCAGGCGGCG
AAGCGGGCCCGAAAGATCGAGTCCCTCGAGAAGAGATGCCATATGGCCGG
CGGTCGGGACGCGGCGCTTACTTCAAGGCTACATCAGTTACTGTCCGAGG
AAAGTGGTGACGCATGA
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