mRNA_P-littoralis_Contig819.28.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.010e-22 Identity = 78/215 (36.28%), Postives = 115/215 (53.49%), Query Frame = 2
Query: 164 GTAGGARKMLPE----MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDK------------LDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAAKRARKIESLEKRCHMAGGRDAALTSRLHQLLSE 760
G+ GA PE +P+ + YP+L++AC WS WSGNTPSEWK+L AS G + DK + T NP+ SP AM A K E +++++ K+KEN+AL E TRK+G+AAME N + EL+ ++K+MV+L+E E+NL AA+R KIE+LE++ +A + ++L+ LL E
Sbjct: 270 GSGSGANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYF-------ANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESANTHVGELSSNIKKMVQLQE-ESNL------AARRKDKIEALERKLMLAISDPNMVKAQLNALLDE 470
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 6.300e-15 Identity = 65/188 (34.57%), Postives = 91/188 (48.40%), Query Frame = 2
Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAAKRARKIESLEKRCHMAGGRDAALTSRLHQLLSE 760
E+PE W++P L++ A+SPWSG PSEWK+L +S G + D NP+ SPA M+ AA K E + R+A DKE + + KKG AA+E N + + +MKRMVEL+E E A KR KI++LEK + G + + L LL+E
Sbjct: 120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRLNPNGDALSRRQHF-------AAIKREKEEERKAAADKE-LQXXXXXALETKKGPAALEAANTHVDSIGANMKRMVELKEAE-------AVGIKRENKIKALEKIIMLRLGDETENRAELEFLLNE 292
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 7.580e-15 Identity = 66/187 (35.29%), Postives = 91/187 (48.66%), Query Frame = 2
Query: 200 MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAAKRARKIESLEKRCHMAGGRDAALTSRLHQLLSE 760
+PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA M+ AA K E ++ +A +KE KE T KKG+AA E N + + MKRMVEL+E E A KR KI++LEK+ + G + + L LL E
Sbjct: 137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRLNPNGDALSRRQHF-------AAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAANTHVETIGADMKRMVELKEAE-------AVGIKRENKIKALEKKIVLRLGDETENRAELVFLLIE 308
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 9.250e-14 Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 2
Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVN 574
E+PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA M+ AA K E ++ R+A DKE KET T+KKG+AA+E N N
Sbjct: 117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRLDPNGDALSRRQHF-------AAIKREKEQERKATADKELQESRKETLETKKKGLAALEAANTN 235
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.690e-12 Identity = 64/198 (32.32%), Postives = 88/198 (44.44%), Query Frame = 2
Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRK----------KGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQAAKRARKIESLEKRCHMAGGRDAALTSRLHQLLSE 760
E+PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA R+A DKE KE T+K KG+AA+E N + + +MKRMVEL K+ EA KR KI++LEKR + G + + L L +E
Sbjct: 105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPAE----------------------------------RKAATDKELQEARKEALETKKXXXXXXXXXKKGLAALEAANTHIETIGANMKRMVEL-------KQAEAVGIKRENKIKALEKRIMLRLGDETENRAELEFLPNE 261
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.480e-7 Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2
Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSP 367
E+PE W++P L++ A+SPWSG PSEWK+L +S G K D NP+SSP
Sbjct: 117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 7.310e-7 Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 2
Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 379
E+ E W++P L+ A+SPWSG PSEWK+L +S G K D NP+ SPA M+
Sbjct: 31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS 91 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig819.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig819.28.1 >prot_P-littoralis_Contig819.28.1 ID=prot_P-littoralis_Contig819.28.1|Name=mRNA_P-littoralis_Contig819.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=239bp MVDVEEQRKEDDGVTSSSGVGSGSAAGLVTGGNAGTAGGARKMLPEMPEGback to top mRNA from alignment at P-littoralis_Contig819:111741..112577- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig819.28.1 ID=mRNA_P-littoralis_Contig819.28.1|Name=mRNA_P-littoralis_Contig819.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=837bp|location=Sequence derived from alignment at P-littoralis_Contig819:111741..112577- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig819:111741..112577- >mRNA_P-littoralis_Contig819.28.1 ID=mRNA_P-littoralis_Contig819.28.1|Name=mRNA_P-littoralis_Contig819.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=717bp|location=Sequence derived from alignment at P-littoralis_Contig819:111741..112577- (Pylaiella littoralis U1_48)back to top |