mRNA_P-littoralis_Contig819.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig819.25.1
Unique NamemRNA_P-littoralis_Contig819.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 406 bits (1044), Expect = 7.590e-137
Identity = 194/285 (68.07%), Postives = 218/285 (76.49%), Query Frame = 1
Query:    1 WHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKL---YDVRAMVVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMD--VGAGGDTSFHTLREELVDHFTYKKKRGDIVWFRSAAK*TK 840
            W  W+RLPEG+ L++VES Y  LG+PGAVGS DCTHV WERCA+SET  HKGKEGYT+VVFEAICDHAGRI+ASTKGYPGAENDKTVV+RDLSV R++ EEPW SYKYE+Y   G  + HTGGWLI DGGYHRV  L   + V A V EQQ WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+AWFTACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S +  V    D +FH  R+ LVDHF + K   ++ WFR+    T+
Sbjct:  254 WRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTGGWLIADGGYHRVPLLICPFKVYANVAEQQ-WSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAEDKVSGDDDAAFHAHRQCLVDHFAFAKSSSEVQWFRAVGADTR 537          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 4.740e-136
Identity = 189/267 (70.79%), Postives = 210/267 (78.65%), Query Frame = 1
Query:    1 WHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKL---YDVRAMVVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMD--VGAGGDTSFHTLREELVDHFTY 786
            W  W+RLPEG+DL++VES Y  LG+PGAVGS DCTHV WERCA+SET  HKGKEGYT+VVFEAICDHAGRI+ASTKGYPGAENDKTVV+RDLSV R++ EEPW SYKYE+Y   G  + HTGGWLI +GGYHRV  L   + V A V EQQ WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+AWFTACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S +  V    D +FH  R+ LVDHF +
Sbjct:   22 WRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTGGWLIAEGGYHRVPLLICPFKVYANVAEQQ-WSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAEDKVSGDDDAAFHAHRQCLVDHFAF 287          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 1.090e-130
Identity = 183/270 (67.78%), Postives = 215/270 (79.63%), Query Frame = 1
Query:    1 WHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKLY-DVRAMVVE-QQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTV---GSMDVGAGGDT-SFHTLREELVDHFTYKK 792
            WHQWV LPEG+ LK+V   Y  +G PGAV S DCTH++W  C +SETN HKGKEGYT++V+EA CDH+GRI++STKG+PGAENDKTVVKRDLSV R++ EEPWASYK+ L+ L+G ++ HTGGWLIVDGGYHRV  L    +    E QQEWSKRFES+RKDIEC FGRLKGRFRLFKTGILF +REKIDNAWFTACIIHNML QFDGLANLEKD++W GKDGEAD+TTG FP  T V      +V  G +T +F   R++LV+H  YKK
Sbjct:  156 WHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQTTGAFPVPTAVVDTAGEEVDDGDNTEAFKLFRQQLVNHVAYKK 425          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 1.390e-93
Identity = 141/204 (69.12%), Postives = 154/204 (75.49%), Query Frame = 1
Query:    1 WHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKL---YDVRAMVVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNML 603
            W  W+RLPEG+DL++VES Y  LG+PGAVGS DCTHV WERCA+SET  HKGKEGYT+VVFEAICDHAGRI+ASTKGYPGAENDKTVV                 YKYE+Y   G  + HTGGWLI DGGYHRV  L   + V A V EQQ WSKR ESVRKD+EC FGRLKGRFRLFKTGILF  R KID+A FTACIIH ML
Sbjct:   49 WRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVV----------------IYKYEMYDETGDVTKHTGGWLIADGGYHRVPLLICPFKVYANVAEQQ-WSKRLESVRKDMECLFGRLKGRFRLFKTGILFGDRTKIDDARFTACIIHTML 235          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 1.490e-87
Identity = 119/220 (54.09%), Postives = 158/220 (71.82%), Query Frame = 1
Query:    1 WHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKLYDV--RAMVVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTG 654
            W  WV+LP GD+LK+VE ++ + G+PGA+ S DCTH  W     SE  ++ GKEGY +VV EA CDH GRIIA+TK YPG+ENDKT+++RD S+ RI+ EEPW+S KY+LY  DG+ + + G WL+VDGGY ++  L         VE+ +WS+R ES+RKDIEC +GR+KGRFRLFK GIL+ +R+ IDN WFTACI+HNML  +D L  + +   W G
Sbjct:   22 WDTWVKLPVGDELKEVERVFRKSGYPGAISSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEATCDHTGRIIAATKSYPGSENDKTIIQRDKSIWRIRDEEPWSSLKYKLYNADGSETEYKGAWLVVDGGYQKIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHYDKLDVMTEATGWQG 241          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 3.270e-81
Identity = 134/271 (49.45%), Postives = 167/271 (61.62%), Query Frame = 1
Query:    1 WHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKLYDVRAM--VVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTSFHTLREELVDHFTYKKKRGDI 807
            W  WV+LP GD+LK+VE IY + G+PGA GS DCTH  W  C +SE N H GKEGYTS+V E  CDH+GRIIA+TK  PGAENDKTV+ RD S+ RI+ EEPW SY             +T  W+IVDGGY ++  L         VE+ +WS+R ES+RKDIEC FGR+KGR+RLF   ILF++R+K DNA FTACI+HNML  F+ L  +E+D +W G  G   E      A     +MDV    +T      E    H   +  R DI
Sbjct:   98 WDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRWPGCPFSEKNTHTGKEGYTSLVVECACDHSGRIIAATKTCPGAENDKTVIARDKSIWRIRDEEPWKSY-------------YTRAWIIVDGGYPKIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILHNMLHSFNRLDEMEEDADWVGSAGRLGE------AAAVAAAMDVDEESETPTPDFEEX---HKRLESMRKDI 346          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 7.880e-73
Identity = 120/280 (42.86%), Postives = 175/280 (62.50%), Query Frame = 1
Query:    1 WHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKLYDVRAMVVEQQE--WSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDG---EADETTGPFPAQTTVGSMD---VGAGGDTSFHTLREELVDHFTYKK-KRGDIVW 813
            + ++V LP G+DL++V   Y+++GFPGAVGS D TH+ W  C Y++  I+ GKEG  +V F+   DH+GR++A T+G+ GA NDKT+++ D +V RI+ +  +   KY+LY  DG      G +L+VD GYH+   L       +++ +  +SKR ES RKD+EC+FG LKGRFR+ K  I F+ +E IDN +FT CI+HNML  FD   ++ ++ NW G  G    AD    P    ++VGSMD        +T F  LR +LV +F Y++ K+ DIVW
Sbjct:  127 YDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRD--PNTDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVW 404          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 8.590e-72
Identity = 120/280 (42.86%), Postives = 175/280 (62.50%), Query Frame = 1
Query:    1 WHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKLYDVRAMVVEQQE--WSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDG---EADETTGPFPAQTTVGSMD---VGAGGDTSFHTLREELVDHFTYKK-KRGDIVW 813
            + ++V LP G+DL++V   Y+++GFPGAVGS D TH+ W  C Y++  I+ GKEG  +V F+   DH+GR++A T+G+ GA NDKT+++ D +V RI+ +  +   KY+LY  DG      G +L+VD GYH+   L       +++ +  +SKR ES RKD+EC+FG LKGRFR+ K  I F+ +E IDN +FT CI+HNML  FD   ++ ++ NW G  G    AD    P    ++VGSMD        +T F  LR +LV +F Y++ K+ DIVW
Sbjct:  218 YDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRD--PNTDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVW 495          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.670e-68
Identity = 122/260 (46.92%), Postives = 161/260 (61.92%), Query Frame = 1
Query:   73 FPGAVGSADCTHVAWERCAY---SETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKLYDVRAM--VVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVG-SMDVGAGGD---TSFHTLREELVDHFTYKKKRGDIVWFRSA 825
            +PGA    D T +A ++  +    E     GKEGYTS+V E  CDH+GRIIA+TK YPGAENDKTV+ R   + RI+ EEPW SYK++LY  DGT +  TG W+IVDGGY ++  L         VE+  WS+R ES+RKDIEC FGR+KG +RLF   ILF++R K+DNAWFTACI+HNML  F+ L  +E+D +W G      E T        VG +MDV    +   + F   R +L+ HF    ++ +I+WF  A
Sbjct:   56 YPGAEN--DKTVIARDKFIWRIRDEEPWKXGKEGYTSLVVECTCDHSGRIIAATKTYPGAENDKTVIARGKFIWRIRDEEPWKSYKFKLYNADGTETECTGAWIIVDGGYPKIPLLIPPIKTHNTVEEHGWSRRLESMRKDIECCFGRVKGLWRLFGGDILFSTRPKVDNAWFTACILHNMLHSFNRLDEMEEDADWMGSAARLREAT-------AVGVAMDVDEESEPPTSGFEEFRRKLIAHFACAWEKKEILWFTRA 306          
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 6.560e-67
Identity = 114/274 (41.61%), Postives = 162/274 (59.12%), Query Frame = 1
Query:   10 WVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKLYD-VRAMVVEQQEWSKR-FESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTG-PFPAQTTVGSMDVGAGGDTSFHTLREELVDHFTYKKKRGDIVWFRS 822
            WVR+P  D+LK +   Y+++G  GA+GS D TH+ W  C YS+ + H GKEGY ++VF     H  R+++ T+G+PGA+NDKT++K D     +++   +   +Y L G DG      G WLIVDGGYH   +L   +RA   + +   KR  ESVRKD EC FG +KGRFR+ K   L+  +E+IDN +FT  I+HNMLL +DG+  LE D +W G DG+ D+    P    +     D     D  F  LR++LV +F Y+  +G + W RS
Sbjct:  181 WVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHDMRVLSCTRGFPGAQNDKTIIKFDKFAMAVRNGW-YKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVRMSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGWKRS 453          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig819.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0H2_9PHAE7.590e-13768.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRU1_9PHAE4.740e-13670.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JV45_9PHAE1.090e-13067.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE1.390e-9369.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K604_9PHAE1.490e-8754.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7N8_9PHAE3.270e-8149.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE7.880e-7342.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE8.590e-7242.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU81_9PHAE1.670e-6846.92DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K8I3_9PHAE6.560e-6741.61Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig819contigP-littoralis_Contig819:107574..109296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size894
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.11e-24
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size408
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791672.265482-UTR-P-littoralis_Contig819:107573..1079991680791672.265482-UTR-P-littoralis_Contig819:107573..107999Pylaiella littoralis U1_48UTRP-littoralis_Contig819 107574..107999 +
1680791672.3038845-UTR-P-littoralis_Contig819:109236..1092961680791672.3038845-UTR-P-littoralis_Contig819:109236..109296Pylaiella littoralis U1_48UTRP-littoralis_Contig819 109237..109296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791672.277808-CDS-P-littoralis_Contig819:107999..1080041680791672.277808-CDS-P-littoralis_Contig819:107999..108004Pylaiella littoralis U1_48CDSP-littoralis_Contig819 108000..108004 +
1680791672.2905288-CDS-P-littoralis_Contig819:108833..1092361680791672.2905288-CDS-P-littoralis_Contig819:108833..109236Pylaiella littoralis U1_48CDSP-littoralis_Contig819 108834..109236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig819.25.1prot_P-littoralis_Contig819.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig819 108000..109236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig819.25.1

>prot_P-littoralis_Contig819.25.1 ID=prot_P-littoralis_Contig819.25.1|Name=mRNA_P-littoralis_Contig819.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
MVVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWF
TACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVG
AGGDTSFHTLREELVDHFTYKKKRGDIVWFRSAAK*
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mRNA from alignment at P-littoralis_Contig819:107574..109296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig819.25.1 ID=mRNA_P-littoralis_Contig819.25.1|Name=mRNA_P-littoralis_Contig819.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1723bp|location=Sequence derived from alignment at P-littoralis_Contig819:107574..109296+ (Pylaiella littoralis U1_48)
TGGCATCAGTGGGTTCGGCTGCCTGAGGGCGATGACCTCAAGCAAGTGGA GAGCATCTACAACCAGCTGGGTTTTCCGGGGGCCGTAGGGTCAGCCGACT GCACCCACGTGGCGTGGGAGCGTTGTGCTTATTCGGAAACGAATATCCAC AAGGGGAAGGAGGGGTACACGTCGGTTGTGTTCGAGGCGATTTGTGACCA CGCTGGCCGCATCATCGCGTCGACGAAGGGGTACCCCGGGGCGGAGAACG ACAAAACGGTGGTCAAGCGCGACTTGTCCGTCAACCGGATCCAACACGAG GAGCCGTGGGCGAGCTACAAGTACGAGCTATACGGTCTTGATGGCACGAG TTCGTGGCACACGGGGGGGTGGCTGATCGTCGACGGGGGGTACCACCGGG TGAGTAAATTGTATGACGTGAGGGCAATGGTGTCGATGAAACCATGAGCG ATTGTGAGTGCAGGTATAAATAGAGAGGAACCCCCCACGCCCTGCAAAGC ACAAGTGTGGTGCCGAAGTGTTGCTGTTGTCTTTCCATGGATACCCCTCG TGCATGCCTTGAGGGCAATGGTTTACATTGGGTTGTTGCAGAGAGTTGCA GGTAAGAATAGAGAGTACCCCCCCCCCCCGCAAAGCATTGAGTCGTACCG AAGTGCTGCTGTTGTCTTTCCAAGAACCCCCTGCCTCCCCGTCGAGGGGG AACCAGCCCGCTGTATTTTCTCTAGTGTACCTTTTACGCAGACCAGAGAA CCATTTGCTCCTGTTCACTTTTGCATCTGATGTCGGATGTAGAACCCGCT GAACTAAGACCAGCTATCCCATTTGTGGGCGCCCCCCCGACGTGTGTGTT GCCGGACATTAGTTGTTCTAGGTAACAATACCACAGGCCCATCACCTCGC ATATTGGTCGCTTATCACCCTCCTGATCATGCACATTGCATCGCGATCTT GCGGTCTTGCGGCACGTAGCCCCCCCACTCGATAGAAGCATCTGATCAGC ATCGATATGAGGTATCCGGTTGCTCTCGTAATATCTCCGAGGATTGGTGG CTGCGGCCTACATTTTCTCTCCGGTTTGCAGTCAATCGAGAGTCCCACGT TTTTTTTTATGCATTACTTATTTCGAGGTTTTAAAACTGAATTTCCGGAT CGACGAAATATAGGCCCTTACCACATTCATTTTTCCCTTCTTTCGCCCCT GCTCTTTTTGGCCATACACCAGGTGCCCCTTCTCATACGCCCGCATGAAA CGTACGCGAGCGTTGAACAGCAGGAGTGGAGCAAGAGATTCGAGTCAGTA CGCAAGGACATTGAGTGCTTTTTCGGAAGACTCAAGGGGCGGTTCAGGTT GTTCAAGACCGGCATTTTGTTCAACAGCCGGGAGAAGATCGACAACGCCT GGTTCACGGCTTGCATCATTCACAACATGCTCCTGCAGTTCGACGGCCTG GCCAACCTTGAGAAGGACATGAACTGGACGGGCAAGGATGGAGAGGCGGA CGAGACCACCGGCCCTTTCCCCGCACAGACGACTGTTGGCAGCATGGATG TGGGAGCCGGCGGCGACACTAGCTTCCACACGCTCAGGGAGGAACTAGTG GACCACTTCACATACAAGAAGAAGAGGGGGGATATTGTCTGGTTTCGGAG CGCGGCTAAATGAACAAAGTTCACGGTAGCGCAGAACCTGTGTTGTCCGG TAGGAGAATGGGTAGTCATTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig819:107574..109296+

>mRNA_P-littoralis_Contig819.25.1 ID=mRNA_P-littoralis_Contig819.25.1|Name=mRNA_P-littoralis_Contig819.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig819:107574..109296+ (Pylaiella littoralis U1_48)
ATGGTCGTTGAACAGCAGGAGTGGAGCAAGAGATTCGAGTCAGTACGCAA
GGACATTGAGTGCTTTTTCGGAAGACTCAAGGGGCGGTTCAGGTTGTTCA
AGACCGGCATTTTGTTCAACAGCCGGGAGAAGATCGACAACGCCTGGTTC
ACGGCTTGCATCATTCACAACATGCTCCTGCAGTTCGACGGCCTGGCCAA
CCTTGAGAAGGACATGAACTGGACGGGCAAGGATGGAGAGGCGGACGAGA
CCACCGGCCCTTTCCCCGCACAGACGACTGTTGGCAGCATGGATGTGGGA
GCCGGCGGCGACACTAGCTTCCACACGCTCAGGGAGGAACTAGTGGACCA
CTTCACATACAAGAAGAAGAGGGGGGATATTGTCTGGTTTCGGAGCGCGG
CTAAATGA
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