mRNA_P-littoralis_Contig12.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.108.1
Unique NamemRNA_P-littoralis_Contig12.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig12.108.1 vs. uniprot
Match: D7G670_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G670_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 5.200e-92
Identity = 177/305 (58.03%), Postives = 200/305 (65.57%), Query Frame = 1 
Query:    1 IMALESSVLGCGSDDWSVDSDYAFQGFADDIKQHQDKQ-RGEPFPQPL----APTLDRSDAPNSLKPSSADAVASPENNLNTGSTSLLHGPPTKAREAEATGQMATVAEGEGVASGRMLVLEYGEM--AREDTKDERLGGGNPPNPLMCNTRLFVDPGSSTDSAHILRLEQRMFLKAAFQLLEERDRLFPASIGSWSNGGAG------VPMGGGGSNLRDHRGVFVNGSAITAGKTGEGVRFQFQ-HESGNTMNRPRLLMSGTLRKATARSVGRLGKTTWKTKYVELTPGSFAYSDNGPTVLGKR 873
            ++ALESSVLGCGSDDWSVDSDYAFQ FADD+K HQ +Q R E   Q L    +PT +RS  PN   P +   V S ++N     T+ LH  P  A  A A     T    +          E GE+  +R  +  E  G  N  +P++ NTRLF DPGSS+DS HILRLEQRMFLKAAFQLLEERDRLFPASIGSW   G G             SNLRD RG +VNG A++AGK GEG RF FQ HE     NRPR+L SGTLRKATARSVGRL KTTWKTKYVELTPGSFAYSDNGP V+GKR
Sbjct:    1 MIALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLQSSSPTRERSAVPNPGTPINKRVVGSLDDNSRA-ETTELHEHPEAAEGARA--DTLTAGGAQAXXXXXXXXPEEGEVGGSRRGSASE-AGKDNRHHPVLSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAGGGWVXXXXXXXXXXXSNLRDRRGGYVNGGAVSAGKAGEGARFHFQQHEPNFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGKR 301
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BLAST of mRNA_P-littoralis_Contig12.108.1 vs. uniprot
Match: A0A6H5KYB1_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 6.830e-50
Identity = 96/132 (72.73%), Postives = 102/132 (77.27%), Query Frame = 1 
Query:  496 MFLKAAFQLLEERDRLFPASIGSWSNGGAG-VPMGGGG-----SNLRDHRGVFVNGSAITAGKTGEGVRFQFQ-HESGNTMNRPRLLMSGTLRKATARSVGRLGKTTWKTKYVELTPGSFAYSDNGPTVLGK 870
            MFLKAAFQLLEERDRLFPASIGSW     G VP          SNLRD RG +VNG+A++AGK GEG RF FQ HE     NRPR+L SGTLRKATARSVGRL KTTWKTKYVELTPGSFAYSDNGP V+GK
Sbjct:    1 MFLKAAFQLLEERDRLFPASIGSWGTAAGGWVPXXXXXXXXXXSNLRDQRGGYVNGAAVSAGKAGEGPRFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGK 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G670_ECTSI5.200e-9258.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYB1_9PHAE6.830e-5072.73PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:483970..485297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size873
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009690.1
Cds size870
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789509.0943656-UTR-P-littoralis_Contig12:483969..4839721680789509.0943656-UTR-P-littoralis_Contig12:483969..483972Pylaiella littoralis U1_48UTRP-littoralis_Contig12 483970..483972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789509.1081607-CDS-P-littoralis_Contig12:483972..4844761680789509.1081607-CDS-P-littoralis_Contig12:483972..484476Pylaiella littoralis U1_48CDSP-littoralis_Contig12 483973..484476 +
1680789509.118665-CDS-P-littoralis_Contig12:484931..4852971680789509.118665-CDS-P-littoralis_Contig12:484931..485297Pylaiella littoralis U1_48CDSP-littoralis_Contig12 484932..485297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.108.1prot_P-littoralis_Contig12.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 483973..485297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.108.1

>prot_P-littoralis_Contig12.108.1 ID=prot_P-littoralis_Contig12.108.1|Name=mRNA_P-littoralis_Contig12.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp
MALESSVLGCGSDDWSVDSDYAFQGFADDIKQHQDKQRGEPFPQPLAPTL
DRSDAPNSLKPSSADAVASPENNLNTGSTSLLHGPPTKAREAEATGQMAT
VAEGEGVASGRMLVLEYGEMAREDTKDERLGGGNPPNPLMCNTRLFVDPG
SSTDSAHILRLEQRMFLKAAFQLLEERDRLFPASIGSWSNGGAGVPMGGG
GSNLRDHRGVFVNGSAITAGKTGEGVRFQFQHESGNTMNRPRLLMSGTLR
KATARSVGRLGKTTWKTKYVELTPGSFAYSDNGPTVLGKR
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mRNA from alignment at P-littoralis_Contig12:483970..485297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.108.1 ID=mRNA_P-littoralis_Contig12.108.1|Name=mRNA_P-littoralis_Contig12.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1328bp|location=Sequence derived from alignment at P-littoralis_Contig12:483970..485297+ (Pylaiella littoralis U1_48)
ATCATGGCTCTCGAAAGTTCTGTCCTCGGCTGCGGCAGCGATGACTGGTC
GGTAGACAGCGACTATGCCTTCCAAGGTTTCGCCGACGATATTAAGCAGC
ACCAAGACAAACAGAGGGGCGAGCCATTTCCGCAGCCGCTGGCTCCAACC
CTCGATCGGAGCGACGCACCAAACTCACTCAAGCCGAGCAGTGCCGACGC
AGTCGCCAGCCCGGAAAATAATCTCAATACGGGGAGTACCTCCCTGCTTC
ACGGACCCCCGACTAAAGCAAGAGAAGCAGAGGCGACTGGGCAAATGGCA
ACGGTGGCTGAAGGGGAAGGGGTCGCCAGCGGCAGAATGCTGGTGCTTGA
GTACGGGGAGATGGCAAGGGAAGACACGAAAGACGAACGACTCGGCGGAG
GCAATCCGCCAAATCCTTTGATGTGTAATACTCGACTCTTCGTGGACCCT
GGTAGCAGCACTGACAGCGCGCATATCCTAAGGCTGGAGCAACGCATGTT
TCTCAAGGTAGGTTGAGTGCTTGAGGTGCTTGTAACGTTATTTGTTGCAG
TCCACGCAGGAGCAGTACACGTGATACGCGGTTGGCAAAACAAACAACAA
TCCGAGCAGGGGTGGTTGGCTGATCGAGGACGTTCGTGATCGCTGGGAAC
GGCTGTTCTCCCTCGTAGACGGTGCCAAAGTGCTAGCTTCGGAGCAAGGT
GAAAAAAGCAGTCTAAACATGGACGAGAGGAGACGAGCGTTCCACCAAGC
ACTGCATCTTTGGCCGGACTATTCGTCAGCAACCAAACAGCAAGATGACG
GCACACACGGTCTCGTTCGACCTACCGACAAACTTCACTTCAGCGCGAAT
CTCACAACCAACATATAACTCCGCTATAGCTTTTAGCACCAGGTGTGCAC
TTTTTTTAATTAACGAGAAACCACGCACCTGAGCCGATTTCAACCACCGT
ACGTCCTCACAGGCCGCTTTCCAGCTACTAGAAGAGCGAGATCGTCTCTT
TCCGGCGTCCATCGGCTCTTGGAGCAACGGAGGAGCGGGGGTACCGATGG
GCGGCGGTGGCAGTAACCTTCGAGACCACAGGGGGGTTTTCGTCAACGGT
AGTGCGATTACCGCCGGAAAGACAGGCGAAGGTGTTCGCTTTCAGTTCCA
GCACGAGTCAGGCAACACCATGAACAGGCCGCGACTTCTCATGTCGGGAA
CCCTGCGAAAAGCTACGGCGAGGAGTGTGGGACGGCTGGGGAAGACCACC
TGGAAGACCAAATACGTCGAGCTCACGCCGGGGAGCTTCGCGTACTCCGA
CAATGGGCCTACAGTGCTTGGGAAGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:483970..485297+

>mRNA_P-littoralis_Contig12.108.1 ID=mRNA_P-littoralis_Contig12.108.1|Name=mRNA_P-littoralis_Contig12.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig12:483970..485297+ (Pylaiella littoralis U1_48)
ATGGCTCTCGAAAGTTCTGTCCTCGGCTGCGGCAGCGATGACTGGTCGGT
AGACAGCGACTATGCCTTCCAAGGTTTCGCCGACGATATTAAGCAGCACC
AAGACAAACAGAGGGGCGAGCCATTTCCGCAGCCGCTGGCTCCAACCCTC
GATCGGAGCGACGCACCAAACTCACTCAAGCCGAGCAGTGCCGACGCAGT
CGCCAGCCCGGAAAATAATCTCAATACGGGGAGTACCTCCCTGCTTCACG
GACCCCCGACTAAAGCAAGAGAAGCAGAGGCGACTGGGCAAATGGCAACG
GTGGCTGAAGGGGAAGGGGTCGCCAGCGGCAGAATGCTGGTGCTTGAGTA
CGGGGAGATGGCAAGGGAAGACACGAAAGACGAACGACTCGGCGGAGGCA
ATCCGCCAAATCCTTTGATGTGTAATACTCGACTCTTCGTGGACCCTGGT
AGCAGCACTGACAGCGCGCATATCCTAAGGCTGGAGCAACGCATGTTTCT
CAAGGCCGCTTTCCAGCTACTAGAAGAGCGAGATCGTCTCTTTCCGGCGT
CCATCGGCTCTTGGAGCAACGGAGGAGCGGGGGTACCGATGGGCGGCGGT
GGCAGTAACCTTCGAGACCACAGGGGGGTTTTCGTCAACGGTAGTGCGAT
TACCGCCGGAAAGACAGGCGAAGGTGTTCGCTTTCAGTTCCAGCACGAGT
CAGGCAACACCATGAACAGGCCGCGACTTCTCATGTCGGGAACCCTGCGA
AAAGCTACGGCGAGGAGTGTGGGACGGCTGGGGAAGACCACCTGGAAGAC
CAAATACGTCGAGCTCACGCCGGGGAGCTTCGCGTACTCCGACAATGGGC
CTACAGTGCTTGGGAAGAGG
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