mRNA_P-littoralis_Contig816.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig816.17.1
Unique NamemRNA_P-littoralis_Contig816.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.900e-22
Identity = 64/155 (41.29%), Postives = 87/155 (56.13%), Query Frame = 3
Query:   45 TGADGKLLEELFHKYTGNMRGVIRALEAGASVNGHYALPYAPLMVAANRADEKMVKFLVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPLMAVFLEKDRPGAFAVVQELLKAGADPGLVAKDG 509
            T  D +LL E+     GN RGV   L+ GAS++G     + PL  AA      +V  L + GA+LE     DV +  G   + SGS AVH+AV+  +VD+L+ALL  GA+PNAAD+ G TPLM           + VV+ELL+ GADP   + +G
Sbjct:    3 TSLDKQLLVEVLK---GNERGVEEQLDLGASLDGFDI--WKPLFAAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSPAVHAAVYARRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADRYVVVRELLRGGADPARQSDNG 152          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: D8LME9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.190e-12
Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  174 MVAANRADEKMVKFLVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPLMAVFLE--KDRPG 443
            MVAA       V+FLV  GA L+  T  DV    G    + GS+A+H+AVHG     L  LL++GANPNAAD  G TPLM    +  KDR G
Sbjct:    1 MVAAGLGKVSFVEFLVARGAGLDSRTCRDVPRPEGGIILRMGSQAIHAAVHGGSPGVLYVLLRLGANPNAADDDGETPLMIACGDSTKDRFG 92          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: A0A7S3FZE7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3FZE7_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 4.430e-7
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  120 LEAGASVNGHYALP----YAPLMVAANRADEKMVKFLVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPLM-AVFLEKDRPGA----FAVVQELLKAGADPGLV 497
            +E G++VN    LP      PLM+A+ +     V  L+E GA +             +R  KSG+ A+H AV G  +  LK+L++ GA+ NA D+ G TPL+    L+   P      F V+  LL  GAD   V
Sbjct:  187 IELGSNVNAVVVLPSGDGLTPLMLASAKGSALAVDLLLEGGASVS------------KRKNKSGATALHIAVKGFHLQILKSLIRAGADVNATDAEGTTPLIECAKLKPSSPAQARARFLVLSFLLGEGADANKV 309          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: A0A2H3IFF3_9EURO (Uncharacterized protein n=2 Tax=Eurotiales TaxID=5042 RepID=A0A2H3IFF3_9EURO)

HSP 1 Score: 58.2 bits (139), Expect = 9.250e-7
Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  144 GHYALPYAPLMVAANRADE--KMVKFLVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPL-MAVFLEKDRPGAFAVVQELLKAGADP 488
            G  AL +A    A+ R+D   +MV+ L++ GA     T             + G+  +H AV G  V  ++ALL+ GANPNA +  G TPL  AV +    PG   +V+ LLK GADP
Sbjct:  666 GRTALHFA----ASKRSDSGPRMVQILLDGGAKATAKTR------------QGGNTPLHYAVEGRSVATIQALLEAGANPNATNGSGVTPLHKAVAI----PGLEEIVEVLLKGGADP 763          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.710e-6
Identity = 43/126 (34.13%), Postives = 61/126 (48.41%), Query Frame = 3
Query:  120 LEAGASVNGHYALPYAPLMVAANRADEKMVKFLVESGADLEIATLCD---VTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPLMAVFLEKDRPGA-FAVVQELLKAGAD 485
            LE GASV+        P+ VA +     ++K LV +GAD E     D      G    ++++G  A++ A        L  LL++GANPNA DS G TP+M              +++ LLKAGAD
Sbjct:    2 LEEGASVHDFGDAVVRPIAVATDYGLIDIIKALVATGADTEAPCWSDKDGAWKGNPEWSYRNGFTALYIAPAVGNAGALLVLLQLGANPNATDSDGGTPIMVTCGTGSVTSTKLTMMRSLLKAGAD 127          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: A0A1I8AU88_9BILA (ANK_REP_REGION domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AU88_9BILA)

HSP 1 Score: 56.2 bits (134), Expect = 3.430e-6
Identity = 46/144 (31.94%), Postives = 62/144 (43.06%), Query Frame = 3
Query:   81 HKYTGNMRGVIRALEAGASVNGHYALPYAPLMVAANRADEKMVKF-LVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPLMAVFLEKDRPGAFAVVQELLKAGADPGLVAKDG 509
            H    N   V +  + G   N H A    PL +A+  +D + V   LV  GA L+                  G   +H A   + VDN+KALL++GA+PN  D IG TPL    L  D     AV + LL   A+ G+    G
Sbjct:  135 HVQARNADKVEKLCQQGLDANFHDADGETPLTIASGVSDNRAVIIQLVGGGAHLDFRN-------------SEGQTGMHKAAFLSMVDNVKALLELGASPNYRDQIGLTPLYYSMLMAD--SNEAVAEMLLAEAAEVGVTDMHG 263          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: A0A6H5IW87_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IW87_9HYME)

HSP 1 Score: 55.5 bits (132), Expect = 8.360e-6
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = 3
Query:   93 GNMRGVIRALEAGASVNGHYALPYAPLMVAANRA-DEKMVKFLVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPLMAV 419
            G  R +   L  G+  N    L Y PL + A+R  D+++V+  ++  +D++++   D ++       K G   +H A+   K  N+K LL+ GANPN+AD+ G  PL  +
Sbjct:  563 GKERNIKDLLRKGSDPNLTNTLGYHPLHIIASRPIDDELVEKFIKMCSDIQLSVQVDFSD-------KHGRTPLHLALLNGKKQNVKDLLRRGANPNSADTCGLLPLHVI 665          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: A0A847GXT2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GXT2_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.250e-5
Identity = 37/117 (31.62%), Postives = 56/117 (47.86%), Query Frame = 3
Query:  162 YAPLMVAANRADEKMVKFLVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPLMAVFLEKDRPGAFAVVQELLKA-GADPGLVAKDG 509
            Y PL++A    +  +V+ LV+ G D  +       N G     ++ +R  +      K+  L+ LL  GA+ NA D  G TPL  +    +  G+   VQ LL A GA+ GLV + G
Sbjct:  309 YTPLLIAVENFNRPLVELLVKRGVDPNVPN-----NFGQTALHRAVARLPYGEAEALKLQVLELLLDYGADVNARDEHGLTPLDCIRRRHEEGGSADAVQSLLLAHGAESGLVERKG 420          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: A0A2E7DJL1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7DJL1_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 3.220e-5
Identity = 44/133 (33.08%), Postives = 56/133 (42.11%), Query Frame = 3
Query:  171 LMVAANRADEKMVKFLVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNA--------------------ADSIGCTPLMAVFLEKDRPGAFAVVQELLKAGADPGLVAKDG 509
            LMVA +   E+M  FL+E+GAD E+A               +G  A+HSAV        K LL  GANPNA                     D IG TP        D      ++  LL+ GADP + +KDG
Sbjct:  243 LMVAIDSGHEEMAIFLLENGADPELAA--------------TGRTALHSAVQHKMHSLAKTLLSYGANPNAQLSRNMPVFSRVILIDNGLSVDKIGATPFFLAAGYND----LEMMDILLEGGADPFINSKDG 357          
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Match: UPI00145F30F3 (ankyrin repeat domain-containing protein n=1 Tax=Aromatoleum diolicum TaxID=75796 RepID=UPI00145F30F3)

HSP 1 Score: 53.1 bits (126), Expect = 4.200e-5
Identity = 38/111 (34.23%), Postives = 54/111 (48.65%), Query Frame = 3
Query:  153 ALPYAPLMVAANRADEKMVKFLVESGADLEIATLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIGCTPLMAVFLEKDRPGAFAVVQELLKAGAD 485
            ALP  PL+ A    D   V+  +  GAD+ +            R   +G  A+H A   A +  ++ LL  GANP+AAD+ G TPL  + + +      AV + LL AGAD
Sbjct:  127 ALPR-PLIDAVACGDAFRVRARLAEGADVSVTDS---------RVRYTGRTALHHAAQRADLATVELLLAAGANPDAADAQGNTPLHLLAMRRRSDSEVAVARSLLDAGAD 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig816.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JAW5_9PHAE4.900e-2241.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LME9_ECTSI4.190e-1246.74Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A7S3FZE7_9EUKA4.430e-734.07Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A2H3IFF3_9EURO9.250e-737.29Uncharacterized protein n=2 Tax=Eurotiales TaxID=5... [more]
D8LMA9_ECTSI1.710e-634.13Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A1I8AU88_9BILA3.430e-631.94ANK_REP_REGION domain-containing protein n=1 Tax=S... [more]
A0A6H5IW87_9HYME8.360e-630.91Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A847GXT2_9BACT2.250e-531.62Uncharacterized protein n=1 Tax=Candidatus Anammox... [more]
A0A2E7DJL1_9GAMM3.220e-533.08Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
UPI00145F30F34.200e-534.23ankyrin repeat domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig816contigP-littoralis_Contig816:85909..86420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LME6
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,zf-MYND
Model size512
Max annot lvl2759|Eukaryota
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-17
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_001040.1
Descriptionspectrin binding
Cds size414
COG categoryI
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791669.5016863-CDS-P-littoralis_Contig816:85908..863221680791669.5016863-CDS-P-littoralis_Contig816:85908..86322Pylaiella littoralis U1_48CDSP-littoralis_Contig816 85909..86322 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791669.5136225-UTR-P-littoralis_Contig816:86322..864201680791669.5136225-UTR-P-littoralis_Contig816:86322..86420Pylaiella littoralis U1_48UTRP-littoralis_Contig816 86323..86420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig816.17.1prot_P-littoralis_Contig816.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig816 85909..86322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig816.17.1

>prot_P-littoralis_Contig816.17.1 ID=prot_P-littoralis_Contig816.17.1|Name=mRNA_P-littoralis_Contig816.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MRGVIRALEAGASVNGHYALPYAPLMVAANRADEKMVKFLVESGADLEIA
TLCDVTNGGGRRAWKSGSRAVHSAVHGAKVDNLKALLKMGANPNAADSIG
CTPLMAVFLEKDRPGAFAVVQELLKAGADPGLVAKDGK
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mRNA from alignment at P-littoralis_Contig816:85909..86420-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig816.17.1 ID=mRNA_P-littoralis_Contig816.17.1|Name=mRNA_P-littoralis_Contig816.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=512bp|location=Sequence derived from alignment at P-littoralis_Contig816:85909..86420- (Pylaiella littoralis U1_48)
TGCAAACAGTGCCCCTCATGAGCGAGTGAAGATTTCCAAGTTGGACCGGC GCTGATGGGAAGCTCTTGGAGGAGTTGTTTCACAAGTACACCGGGAACAT GAGAGGTGTTATTAGGGCGCTCGAAGCTGGGGCAAGCGTGAATGGACATT ATGCACTTCCGTACGCTCCCCTCATGGTCGCCGCTAACAGGGCAGATGAG AAGATGGTAAAGTTTTTGGTGGAGAGCGGGGCGGACTTGGAGATCGCTAC TTTGTGCGATGTGACCAATGGAGGGGGAAGGAGGGCGTGGAAGAGTGGGT CACGGGCTGTGCACTCCGCTGTCCACGGTGCCAAAGTCGACAACCTCAAG GCTTTGCTCAAGATGGGGGCGAACCCCAACGCCGCCGATTCAATTGGCTG CACGCCGCTCATGGCGGTTTTCCTGGAAAAGGATCGTCCAGGAGCATTTG CGGTGGTGCAAGAACTGCTCAAAGCAGGCGCCGACCCCGGACTGGTCGCT AAGGACGGGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig816:85909..86420-

>mRNA_P-littoralis_Contig816.17.1 ID=mRNA_P-littoralis_Contig816.17.1|Name=mRNA_P-littoralis_Contig816.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig816:85909..86420- (Pylaiella littoralis U1_48)
ATGAGAGGTGTTATTAGGGCGCTCGAAGCTGGGGCAAGCGTGAATGGACA
TTATGCACTTCCGTACGCTCCCCTCATGGTCGCCGCTAACAGGGCAGATG
AGAAGATGGTAAAGTTTTTGGTGGAGAGCGGGGCGGACTTGGAGATCGCT
ACTTTGTGCGATGTGACCAATGGAGGGGGAAGGAGGGCGTGGAAGAGTGG
GTCACGGGCTGTGCACTCCGCTGTCCACGGTGCCAAAGTCGACAACCTCA
AGGCTTTGCTCAAGATGGGGGCGAACCCCAACGCCGCCGATTCAATTGGC
TGCACGCCGCTCATGGCGGTTTTCCTGGAAAAGGATCGTCCAGGAGCATT
TGCGGTGGTGCAAGAACTGCTCAAAGCAGGCGCCGACCCCGGACTGGTCG
CTAAGGACGGGAAG
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