mRNA_P-littoralis_Contig81.95.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5JDY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY9_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 5.340e-22 Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 13 NAIHPFEFMSGSIPTMLWEDGIALLGGDDSKS-GAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQL 417
NA HPF+FM GS+PTMLWEDGI L GG D +S G+ ++PD HPGSGSSVPGGPGVR E T ++ S ++ +KPK +D + A +E+VA KA + E+R E GD R + L
Sbjct: 118 NARHPFQFMRGSLPTMLWEDGIELSGGGDDESYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVVALWRKAAEQEVRGDEPAFGDTEKDRAKDL 244
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5JXW8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW8_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.550e-21 Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = 1
Query: 13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQLT-----DKTRSLKEKIAAAEAD 468
NA HPF+FM GS+PTMLWEDGI L GG DD G+ ++PD HPGSGSSVPGGPGVR E T ++ S ++ +KPK +D + A +E++A KA + E R + +GD R + L D + L+ K+ +A +D
Sbjct: 200 NARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEERGDKPAIGDIEKDRAKDLAMEGFIDDVQRLQAKVDSASSD 348
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5JRU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU1_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 2.040e-20 Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 1
Query: 13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQLT-----DKTRSLKEKIAAAEAD 468
NA HPF+FM GS+PTMLWEDGI L GG DD G+ ++PD HPGSGSSVPGGPGVR E T ++ S ++ +KPK +D + A +E++A KA + E R + GD R + L D + L+ K+ +A +D
Sbjct: 563 NARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEERGDKPAFGDIEKDRAKDLAMEGFIDDVQRLQAKVDSASSD 711
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5KYJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ0_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.050e-17 Identity = 54/127 (42.52%), Postives = 71/127 (55.91%), Query Frame = 1
Query: 13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGD 390
NA +PF+FM G++P MLWEDGI L GG DD + ++PD HPGSGSSVPGGPGVR E + T K +KPK +D + A +E++A KA + E+RR + GD
Sbjct: 200 NAHNPFQFMRGALPAMLWEDGIDLSGGGDDETYRPSDIVLPDGHPGSGSSVPGGPGVRGRGEATPASSAGNTNSRKH---------KKPKTGSDDRAELIADTKEVIALWRKAREQEVRREDPAFGD 317
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5JPA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA4_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 7.880e-17 Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 1
Query: 37 MSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQLT-----DKTRSLKEKIAAA 459
M GS+PTMLWEDGI L GG DD G+ ++PD HPGSGSSVPGGPGVR E T ++ S ++ +KPK +D + A +E++A KA + E+R E G+ R + L D + L+ K+ +A
Sbjct: 1 MRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNNNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEVRGDEPAFGEIEKDRAKDLAMEGSIDDIQRLQAKVDSA 138 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig81.95.1 >prot_P-littoralis_Contig81.95.1 ID=prot_P-littoralis_Contig81.95.1|Name=mRNA_P-littoralis_Contig81.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp GDPENAIHPFEFMSGSIPTMLWEDGIALLGGDDSKSGAGEAIIPDSHPGSback to top mRNA from alignment at P-littoralis_Contig81:332505..333012- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig81.95.1 ID=mRNA_P-littoralis_Contig81.95.1|Name=mRNA_P-littoralis_Contig81.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=508bp|location=Sequence derived from alignment at P-littoralis_Contig81:332505..333012- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig81:332505..333012- >mRNA_P-littoralis_Contig81.95.1 ID=mRNA_P-littoralis_Contig81.95.1|Name=mRNA_P-littoralis_Contig81.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig81:332505..333012- (Pylaiella littoralis U1_48)back to top |