mRNA_P-littoralis_Contig81.95.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.95.1
Unique NamemRNA_P-littoralis_Contig81.95.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5JDY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.340e-22
Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   13 NAIHPFEFMSGSIPTMLWEDGIALLGGDDSKS-GAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQL 417
            NA HPF+FM GS+PTMLWEDGI L GG D +S   G+ ++PD HPGSGSSVPGGPGVR   E          T ++ S     ++ +KPK   +D   + A  +E+VA   KA + E+R  E   GD    R + L
Sbjct:  118 NARHPFQFMRGSLPTMLWEDGIELSGGGDDESYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVVALWRKAAEQEVRGDEPAFGDTEKDRAKDL 244          
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5JXW8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.550e-21
Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = 1
Query:   13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQLT-----DKTRSLKEKIAAAEAD 468
            NA HPF+FM GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR   E          T ++ S     ++ +KPK   +D   + A  +E++A   KA + E R  +  +GD    R + L      D  + L+ K+ +A +D
Sbjct:  200 NARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEERGDKPAIGDIEKDRAKDLAMEGFIDDVQRLQAKVDSASSD 348          
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5JRU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.040e-20
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQLT-----DKTRSLKEKIAAAEAD 468
            NA HPF+FM GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR   E          T ++ S     ++ +KPK   +D   + A  +E++A   KA + E R  +   GD    R + L      D  + L+ K+ +A +D
Sbjct:  563 NARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEERGDKPAFGDIEKDRAKDLAMEGFIDDVQRLQAKVDSASSD 711          
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5KYJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.050e-17
Identity = 54/127 (42.52%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGD 390
            NA +PF+FM G++P MLWEDGI L GG DD      + ++PD HPGSGSSVPGGPGVR   E     +   T   K          +KPK   +D   + A  +E++A   KA + E+RR +   GD
Sbjct:  200 NAHNPFQFMRGALPAMLWEDGIDLSGGGDDETYRPSDIVLPDGHPGSGSSVPGGPGVRGRGEATPASSAGNTNSRKH---------KKPKTGSDDRAELIADTKEVIALWRKAREQEVRREDPAFGD 317          
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Match: A0A6H5JPA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.880e-17
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   37 MSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFGVIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQLT-----DKTRSLKEKIAAA 459
            M GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR   E          T ++ S     ++ +KPK   +D   + A  +E++A   KA + E+R  E   G+    R + L      D  + L+ K+ +A
Sbjct:    1 MRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNNNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEVRGDEPAFGEIEKDRAKDLAMEGSIDDIQRLQAKVDSA 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JDY9_9PHAE5.340e-2244.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXW8_9PHAE2.550e-2140.51Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU1_9PHAE2.040e-2040.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYJ0_9PHAE1.050e-1742.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPA4_9PHAE7.880e-1738.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:332505..333012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size508
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791661.8365054-CDS-P-littoralis_Contig81:332505..3330121680791661.8365054-CDS-P-littoralis_Contig81:332505..333012Pylaiella littoralis U1_48CDSP-littoralis_Contig81 332506..333012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.95.1prot_P-littoralis_Contig81.95.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 332506..333012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.95.1

>prot_P-littoralis_Contig81.95.1 ID=prot_P-littoralis_Contig81.95.1|Name=mRNA_P-littoralis_Contig81.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
GDPENAIHPFEFMSGSIPTMLWEDGIALLGGDDSKSGAGEAIIPDSHPGS
GSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRDRKPKKVPEDFG
VIRAGVEELVAKMSKAVDHEIRRGETEVGDGNLTRLEQLTDKTRSLKEKI
AAAEADGDDDSKTMYNAVL
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mRNA from alignment at P-littoralis_Contig81:332505..333012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.95.1 ID=mRNA_P-littoralis_Contig81.95.1|Name=mRNA_P-littoralis_Contig81.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=508bp|location=Sequence derived from alignment at P-littoralis_Contig81:332505..333012- (Pylaiella littoralis U1_48)
GGAGACCCCGAAAACGCAATACACCCGTTCGAGTTCATGTCCGGCTCTAT CCCTACTATGCTATGGGAGGATGGTATTGCGCTCCTTGGCGGTGACGACA GCAAGAGCGGCGCCGGCGAGGCAATCATCCCAGATTCCCACCCAGGCTCT GGCAGCAGCGTGCCTGGTGGCCCGGGTGTACGAACGGCGAAGGAAAGAGT ACGCACTGGTGCCCAGGACCCTACAACGGTCAGCAAGGAGAGTACGGTCA AGGTCGAGAAAAGAGACAGAAAACCAAAGAAAGTCCCGGAGGACTTCGGG GTAATCCGGGCCGGAGTTGAGGAACTCGTGGCGAAGATGTCGAAGGCTGT AGACCACGAGATCCGGCGCGGTGAAACCGAGGTGGGGGATGGCAACCTCA CACGTCTGGAACAGCTGACGGATAAAACGCGGTCTCTGAAAGAAAAGATC GCGGCCGCTGAGGCGGACGGTGATGATGACTCTAAAACGATGTACAACGC GGTGCTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig81:332505..333012-

>mRNA_P-littoralis_Contig81.95.1 ID=mRNA_P-littoralis_Contig81.95.1|Name=mRNA_P-littoralis_Contig81.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig81:332505..333012- (Pylaiella littoralis U1_48)
GGAGACCCCGAAAACGCAATACACCCGTTCGAGTTCATGTCCGGCTCTAT
CCCTACTATGCTATGGGAGGATGGTATTGCGCTCCTTGGCGGTGACGACA
GCAAGAGCGGCGCCGGCGAGGCAATCATCCCAGATTCCCACCCAGGCTCT
GGCAGCAGCGTGCCTGGTGGCCCGGGTGTACGAACGGCGAAGGAAAGAGT
ACGCACTGGTGCCCAGGACCCTACAACGGTCAGCAAGGAGAGTACGGTCA
AGGTCGAGAAAAGAGACAGAAAACCAAAGAAAGTCCCGGAGGACTTCGGG
GTAATCCGGGCCGGAGTTGAGGAACTCGTGGCGAAGATGTCGAAGGCTGT
AGACCACGAGATCCGGCGCGGTGAAACCGAGGTGGGGGATGGCAACCTCA
CACGTCTGGAACAGCTGACGGATAAAACGCGGTCTCTGAAAGAAAAGATC
GCGGCCGCTGAGGCGGACGGTGATGATGACTCTAAAACGATGTACAACGC
GGTGCTT
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