prot_P-littoralis_Contig12.37.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig12.37.2
Unique Nameprot_P-littoralis_Contig12.37.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length263
Homology
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 7.640e-96
Identity = 164/232 (70.69%), Postives = 183/232 (78.88%), Query Frame = 0
Query:    1 MATDEAKVVDAVPPPPAYYKLFSPDAAL-GVHQPATGAAAGXXXXAG-----SPNVFPLEPPRPPGPGETYTMFGMPYSSEPVTEELLPPEKMVVPPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTSALEAAMLQCASARQGAAACLGLVPSGASDTKE------DSGGVPMDVVDDLGG 220
            MAT+EAKVVDAVPPPPAYYKLFSP A+L G    A+ A A     AG     +PN FPL+PPRPPGPGETY MFGMPYSSEPV +ELLPPEK+VVP +G+AIDFRA LK LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QAE+NDAV S LEAAM QC SA++ A +CLGL   GAS   E        G V MD+ + +GG
Sbjct:    1 MATEEAKVVDAVPPPPAYYKLFSPGASLTGQDVGASAAIAAPGDSAGGAGGTAPNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESAFSCLGLQEHGASCVAEGERERAQQGRVEMDIDETIGG 232          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.480e-69
Identity = 127/198 (64.14%), Postives = 143/198 (72.22%), Query Frame = 0
Query:   67 MFGMPYSSEPVTEELLPPEKMVVPPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTSALEAAMLQCASARQGAAACLGLVPSGASDTKEDSGG------VPMDVVDDLGGXXXXXXXXXXXXXXXXXXXXXXXXXKGKLRAVEPAGVD 258
            MFGMPYSSEPV +ELLPPEK+VVP +G+AIDFRAELK LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QA++NDAV SALEAAM QC SA++GA +CLGL  +GAS   E  G       V MDV + +GG                         KGKL AV    V+
Sbjct:    1 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGAFSCLGLQENGASGVAEGEGERARQGRVEMDVDETIGGAATTAVGEGGVAGEGVAASEFGKAGKGKLGAVLAPAVE 198          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.230e-26
Identity = 67/177 (37.85%), Postives = 100/177 (56.50%), Query Frame = 0
Query:    4 DEAKVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGETYTMFGMPYSSEPVTEELLPPEKMVVPPTGEAI-DFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTSALEAAM 179
            DE +VV A+P PP Y+K F  +                         F L+  RPP P  +Y  FG+PYS+E     L+P EK + P   +   +FR+E+++LL SIMANY Q +++L+  PS+   K+ ++E LFVNFHS+LN++R HQAR ++L RL+ Q +      + LE+ M
Sbjct:    3 DELQVVSALPAPPDYFKRFEDE------------------------NFQLK--RPPVPEGSYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRNFRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQM 153          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.480e-23
Identity = 63/183 (34.43%), Postives = 102/183 (55.74%), Query Frame = 0
Query:    7 KVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGETYTMFGMPYSSEPVTEELLPPEKMVV--------PPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTSALEAAMLQ 181
            ++V   PPPPA++ L+  D    V+ PA                    PP P  P   Y MFG PYS++ V  +LLP +   +         P  +AID++A+LK+L  S++AN  Q +++L+ +P   +EK+ D+E LFVN H+L+N++R HQAR +I++ LRGQ E+  A  + +   +++
Sbjct:   11 EIVSEFPPPPAFFSLYQID---DVNAPA--------------------PPAPMAPN--YHMFGTPYSTKDVVPDLLPDDSKKLYLSDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIE 168          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A329SFW2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFW2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.910e-20
Identity = 50/119 (42.02%), Postives = 80/119 (67.23%), Query Frame = 0
Query:   56 PRPPGPGE-TYTMFGMPYSSEPVTEELLP-PEKMVVPPTGE-----AIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQ 167
            P PP P E TY MFG PYS++ V  +LLP P K +  P GE      +D++AE+K++  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q ++
Sbjct:   34 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKLYAPQGEDGGGAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 152          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: H3GJZ4_PHYRM (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJZ4_PHYRM)

HSP 1 Score: 97.1 bits (240), Expect = 1.330e-19
Identity = 57/170 (33.53%), Postives = 94/170 (55.29%), Query Frame = 0
Query:    4 DEAKVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGE-TYTMFGMPYSSEPVTEELLPPEKMVVPPTGEA-----IDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQ 167
            D  ++V   P PP ++ L+           A G  +G               P PP P E TY MFG PYS++ V  +LLP +K+  P   E      +D++AE+K++  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q ++
Sbjct:  148 DTPEIVSEFPAPPKFFALY-----------ADGVESG---------------PAPPEPMEPTYHMFGSPYSTQDVVPDLLPGKKLYAPAGEEGDEDAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINSFRPHQARETVIQMLKTQVQE 291          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A024GGG9_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGG9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.470e-19
Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 0
Query:    7 KVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGP-GETYTMFGMPYSSEPVTEELLPPE--KMVVP------PTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQNDAVTS 173
            ++V   PPPPA++ L+                           V   + P PP P    Y MFG PYS++ +  +LLP +  K+ +P      P  ++ID++A+LK+L  S++AN  Q +++L+ +P   +EK+ D+E LFVN H+L+N++R HQAR  I+  L+ Q E+  A  S
Sbjct:   34 EIVSEFPPPPAFFSLYQ--------------------------VNNADAPLPPAPMAPNYHMFGTPYSTKDIVPDLLPDDSKKLYLPTLSTQDPKEQSIDYKAQLKKLNRSLLANCIQLLDVLIRNPKLFNEKVDDLELLFVNMHNLINKFRPHQAREHIILMLQSQIEEKQAAIS 183          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A8K1CA38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA38_PYTOL)

HSP 1 Score: 94.0 bits (232), Expect = 2.970e-19
Identity = 59/170 (34.71%), Postives = 95/170 (55.88%), Query Frame = 0
Query:    4 DEAKVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGETYTMFGMPYSSEPVTEELLP-PEKMV-------VP-PTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQ 164
            D  ++V A P PPA++ L++     G   P T                 +EP        TY MFG PYS++ V  +LLP P K +       VP  + E ID++A++K++ +S++AN+ + +++L+  PS  +EKL+D+E LF+N H+L+N +R HQAR  I+  L+ Q
Sbjct:   17 DAPEIVSAFPAPPAFFVLYADGVESGPPPPET-----------------MEP--------TYHMFGTPYSTKDVVPDLLPQPGKKLYLDGKDSVPGESSEVIDYKAQMKKINHSLLANFTELVDVLIKKPSLFNEKLADLELLFLNMHNLINAFRPHQARETIIHMLKTQ 161          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A2P4YE96_9STRA (Mediator of RNA polymerase II transcription subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE96_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.320e-18
Identity = 57/169 (33.73%), Postives = 97/169 (57.40%), Query Frame = 0
Query:    2 ATDEA-KVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGXXXXAGSPNVFPLEPPRPPGPGE-TYTMFGMPYSSEPVTEELLP-PEKMVVPPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQ 167
            A +EA ++V   P PP ++ L+           A G  +G               P PP P E TY MFG PYS++ V  +LLP P++ +     + +D++AE+K++  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q ++
Sbjct:  556 AEEEAPEIVSEFPAPPKFFALY-----------ADGVESG---------------PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDRKLYAQGDDPVDYKAEMKKINRSLLANFVELVDILIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 698          
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Match: A0A225WFP8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WFP8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.060e-17
Identity = 41/104 (39.42%), Postives = 70/104 (67.31%), Query Frame = 0
Query:   65 YTMFGMPYSSEPVTEELLP-PEKMVVPPTGEAIDFRAELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEQ 167
            Y MFG PYS++ V  +LLP  EK +     E + ++AE+K++  S++AN+ + +++LV  P+  + KL DVE LF+N H+L+N +R HQAR  +++ L+ Q ++
Sbjct:    5 YHMFGSPYSTQDVVPDLLPHAEKKLYAKNDETVHYKAEMKKINRSLLANFVELVDVLVKKPAMFNAKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.37.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU59_9PHAE7.640e-9670.69Mediator of RNA polymerase II transcription subuni... [more]
D8LAU4_ECTSI1.480e-6964.14Mediator of RNA polymerase II transcription subuni... [more]
A0A6U1QAX8_9STRA5.230e-2637.85Mediator of RNA polymerase II transcription subuni... [more]
F0WF41_9STRA9.480e-2334.43Mediator of RNA polymerase II transcription subuni... [more]
A0A329SFW2_9STRA5.910e-2042.02Mediator of RNA polymerase II transcription subuni... [more]
H3GJZ4_PHYRM1.330e-1933.53Mediator of RNA polymerase II transcription subuni... [more]
A0A024GGG9_9STRA1.470e-1933.52Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CA38_PYTOL2.970e-1934.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4YE96_9STRA1.320e-1833.73Mediator of RNA polymerase II transcription subuni... [more]
A0A225WFP8_9STRA5.060e-1739.42Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009244Mediator complex, subunit Med7PFAMPF05983Med7coord: 12..183
e-value: 8.6E-31
score: 107.5
IPR009244Mediator complex, subunit Med7PANTHERPTHR21428MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7coord: 2..185
IPR044888Mediator complex, subunit Med7 superfmailyGENE3D6.10.140.200coord: 91..186
e-value: 1.2E-20
score: 75.2
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 96..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:182882..186012 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.37.2mRNA_P-littoralis_Contig12.37.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig12 182882..186434 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig12.37.2 ID=prot_P-littoralis_Contig12.37.2|Name=mRNA_P-littoralis_Contig12.37.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=263bp
MATDEAKVVDAVPPPPAYYKLFSPDAALGVHQPATGAAAGAAAGAGSPNV
FPLEPPRPPGPGETYTMFGMPYSSEPVTEELLPPEKMVVPPTGEAIDFRA
ELKRLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRA
HQARHLILERLRGQAEQNDAVTSALEAAMLQCASARQGAAACLGLVPSGA
SDTKEDSGGVPMDVVDDLGGGGGIGVDGASGMSGVGVGKGNGLGGKGKLR
AVEPAGVDESGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009244Mediatior_Med7
IPR044888Mediatior_Med7_sf
IPR037212Med7/Med21-like