mRNA_P-littoralis_Contig80.21.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: D7FNI9_ECTSI (SASA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNI9_ECTSI) HSP 1 Score: 186 bits (471), Expect = 1.870e-54 Identity = 104/229 (45.41%), Postives = 137/229 (59.83%), Query Frame = 3
Query: 84 GEGYDENLDVPNNNRIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQDSHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAAL--NASDGDCLAAALWHQGESD---RPKFAAYEGAWTEIVTTLRDSNPAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESNEGGDNIHLSAACQRRYAERYYASLNAVIYN 755
GEGYD ++D P++ RI+QW+R NT+ITA ER + + + +A ++ LP NRNVL VPTA T LV GPW+ G+ F AV RM AAL N + G+C+AA LWHQGE D R Y+ WT+++ TLR PAA PV+LGE TP++ +PI +R IPD+ PFTA+APS GL SN G D +H AA QR Y +RY+ L + N
Sbjct: 44 GEGYDADIDGPDDPRIQQWSRANTVITASERLQHADFDRIDQTRVGMGTAFGRAYVKTLPANRNVLLVPTAFGATRLVNGPWSPGGNLFEDAVTRMEAALASNGAVGNCVAAVLWHQGEGDAAGRIDQETYQSTWTDMINTLRSRIPAAAEAPVILGEFTPHMLARNRALSEPIIAAIRAIPDSVPFTAVAPSDGLSSNFG-DPVHFDAAAQREYGQRYFDKLGDAVRN 271
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: D7FNI7_ECTSI (SASA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI7_ECTSI) HSP 1 Score: 183 bits (464), Expect = 3.140e-53 Identity = 102/229 (44.54%), Postives = 137/229 (59.83%), Query Frame = 3
Query: 84 GEGYDENLDVPNNNRIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQDSHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAAL--NASDGDCLAAALWHQGESDRPKFA---AYEGAWTEIVTTLRDSNPAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESNEGGDNIHLSAACQRRYAERYYASLNAVIYN 755
GEGYD ++D PN+ RI+QW+R+NT+ITA ER + + + + +A ++ LP NRNVL VPTA T LV GPW+ G+ F AV RM AAL N + G+C+AA LWHQGESD Y+ WT ++ TLR PAA PV+LGE TP++ +PI +R IPD+ PFTA+APS GL +N G +H A QR Y +RY+ L+ + N
Sbjct: 54 GEGYDADIDGPNDPRIQQWSRDNTVITASERLQHADHGRAGKRRVGMGTAFGRAFVKTLPANRNVLLVPTAFGATRLVNGPWSPGGNLFEDAVTRMEAALASNGAAGNCVAAILWHQGESDAGDGIDQETYQSIWTNMINTLRSRIPAAAEAPVILGEFTPHMLARNRALSEPIIAAIRAIPDSVPFTAVAPSDGLSTNSVGP-VHFDAVGQREYGQRYFDKLDDAVRN 281
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: D7FNJ0_ECTSI (SASA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ0_ECTSI) HSP 1 Score: 174 bits (441), Expect = 7.040e-50 Identity = 101/237 (42.62%), Postives = 134/237 (56.54%), Query Frame = 3
Query: 81 QGEGYDENLDVPNNNRIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQDSHL-------QACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAAL--NASDGDCLAAALWHQGESDRPKFA---AYEGAWTEIVTTLRDSNPAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESNEGGDNIHLSAACQRRYAERYYASLNAVIYN 755
+G+GYD N+D PN+ RI+QW+R NT+ITA E + +V+++ + +A +E LP RNVL V T T LV GPW+ G F AV R AAL N + G+C+AA LWHQGESD Y+ WT+++ TLR PAA PV+LGE TP +PI +R IPD+ PFT +APS GL SN G D +H +AA QR Y +RY+ L + N
Sbjct: 49 RGQGYDANIDGPNDPRIQQWSRANTVITASEHLQHADFA-------IVEETRVGMGTAFGRAYVETLPAKRNVLLVSTGYGGTRLVNGPWSPGGRLFEDAVRRTEAALASNGATGNCVAAVLWHQGESDAIAGVDQETYQFTWTDMINTLRSRIPAAAEAPVILGEFTPAWIAGNRALSEPILSAIRAIPDSVPFTVVAPSDGLSSNFG-DPVHFTAAAQREYGQRYFDKLGDAVRN 277
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: A0A6H5JM94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM94_9PHAE) HSP 1 Score: 171 bits (433), Expect = 8.430e-45 Identity = 99/230 (43.04%), Postives = 127/230 (55.22%), Query Frame = 3
Query: 81 QGEGYDENLDVPNNNRIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQDSHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAAL--NASDGDCLAAALWHQGESDRPKFA---AYEGAWTEIVTTLRDSNPAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESNEGGDNIHLSAACQRRYAERYYASLNAVIYN 755
+G+GYD N+D PN+ RI+QW+R NT+ITA E + + + +A +E LP RNVL V T T LV GPW+ G F AV R AAL N + G+C+AA LWHQGESD Y+ WT ++ TLR PAA PV+LGE TP T +PI +R IPD+ PFT +APS GL SN D +H A QR Y +RY+ L + N
Sbjct: 859 RGQGYDANIDGPNDPRIQQWSRANTVITASEHLQHADFDVVEETRVGMGTAFGRAYVETLPAKRNVLLVSTGYGGTRLVNGPWSPGGRLFEDAVRRTEAALASNGATGNCVAAVLWHQGESDAVAGVDQETYQSTWTNMINTLRSRIPAAAEAPVILGEFTPAWTAEDRARAEPILSAIRAIPDSVPFTVVAPSDGLSSNVD-DPVHFDAVGQREYGQRYFDKLGDAVRN 1087
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: A0A0K8P381_IDESA (Acetylxylan esterase related enzyme n=1 Tax=Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6) TaxID=1547922 RepID=A0A0K8P381_IDESA) HSP 1 Score: 93.6 bits (231), Expect = 9.010e-19 Identity = 77/222 (34.68%), Postives = 105/222 (47.30%), Query Frame = 3
Query: 126 RIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQD-SHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAALNASDGDCLAAALWHQGESDRPKF--AAYEGAWTEIVTTLRDSNPAAEN---VPVVLGELTP--YVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESN--EGGDN-IHLSAACQRRYAERYYASLNAVIYNV 758
RI+QW + A + + P P R+ S +A L LP R VL VP A TA W F AV R+NAAL + G+CLAA LW QGESD A Y+ A ++ TLR A + VP +LG+ +P PG + I DV+ G P +TA+ + GL SN +G + +HL A+ R Y R+Y +L + N
Sbjct: 87 RIQQWTMAGGMALASDPLQHPDA--PFNVGRIGPGMSFARAYLAALPTARKVLLVPAAYNGTAFSNRRWNPGDDLFEAAVTRLNAALASDGGNCLAAILWSQGESDVDTMTGAQYQAALDTMIGTLRTRIAAGQGGATVPFLLGQFSPDWIAPAPTPGQ-QAILDVINGTPGRLRYTAVVSTAGLTSNLTQGLNGAVHLDASSHRIYGRRFYEALPVALANT 305 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig80.21.1 >prot_P-littoralis_Contig80.21.1 ID=prot_P-littoralis_Contig80.21.1|Name=mRNA_P-littoralis_Contig80.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=193bp MKNRLVQDSHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHback to top mRNA from alignment at P-littoralis_Contig80:156283..157687- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig80.21.1 ID=mRNA_P-littoralis_Contig80.21.1|Name=mRNA_P-littoralis_Contig80.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1405bp|location=Sequence derived from alignment at P-littoralis_Contig80:156283..157687- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig80:156283..157687- >mRNA_P-littoralis_Contig80.21.1 ID=mRNA_P-littoralis_Contig80.21.1|Name=mRNA_P-littoralis_Contig80.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig80:156283..157687- (Pylaiella littoralis U1_48)back to top |