mRNA_P-littoralis_Contig80.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.21.1
Unique NamemRNA_P-littoralis_Contig80.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: D7FNI9_ECTSI (SASA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNI9_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.870e-54
Identity = 104/229 (45.41%), Postives = 137/229 (59.83%), Query Frame = 3
Query:   84 GEGYDENLDVPNNNRIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQDSHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAAL--NASDGDCLAAALWHQGESD---RPKFAAYEGAWTEIVTTLRDSNPAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESNEGGDNIHLSAACQRRYAERYYASLNAVIYN 755
            GEGYD ++D P++ RI+QW+R NT+ITA ER +             +  +  +A ++ LP NRNVL VPTA   T LV GPW+  G+ F  AV RM AAL  N + G+C+AA LWHQGE D   R     Y+  WT+++ TLR   PAA   PV+LGE TP++        +PI   +R IPD+ PFTA+APS GL SN G D +H  AA QR Y +RY+  L   + N
Sbjct:   44 GEGYDADIDGPDDPRIQQWSRANTVITASERLQHADFDRIDQTRVGMGTAFGRAYVKTLPANRNVLLVPTAFGATRLVNGPWSPGGNLFEDAVTRMEAALASNGAVGNCVAAVLWHQGEGDAAGRIDQETYQSTWTDMINTLRSRIPAAAEAPVILGEFTPHMLARNRALSEPIIAAIRAIPDSVPFTAVAPSDGLSSNFG-DPVHFDAAAQREYGQRYFDKLGDAVRN 271          
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: D7FNI7_ECTSI (SASA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI7_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 3.140e-53
Identity = 102/229 (44.54%), Postives = 137/229 (59.83%), Query Frame = 3
Query:   84 GEGYDENLDVPNNNRIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQDSHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAAL--NASDGDCLAAALWHQGESDRPKFA---AYEGAWTEIVTTLRDSNPAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESNEGGDNIHLSAACQRRYAERYYASLNAVIYN 755
            GEGYD ++D PN+ RI+QW+R+NT+ITA ER +         +   +  +  +A ++ LP NRNVL VPTA   T LV GPW+  G+ F  AV RM AAL  N + G+C+AA LWHQGESD         Y+  WT ++ TLR   PAA   PV+LGE TP++        +PI   +R IPD+ PFTA+APS GL +N  G  +H  A  QR Y +RY+  L+  + N
Sbjct:   54 GEGYDADIDGPNDPRIQQWSRDNTVITASERLQHADHGRAGKRRVGMGTAFGRAFVKTLPANRNVLLVPTAFGATRLVNGPWSPGGNLFEDAVTRMEAALASNGAAGNCVAAILWHQGESDAGDGIDQETYQSIWTNMINTLRSRIPAAAEAPVILGEFTPHMLARNRALSEPIIAAIRAIPDSVPFTAVAPSDGLSTNSVGP-VHFDAVGQREYGQRYFDKLDDAVRN 281          
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: D7FNJ0_ECTSI (SASA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ0_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 7.040e-50
Identity = 101/237 (42.62%), Postives = 134/237 (56.54%), Query Frame = 3
Query:   81 QGEGYDENLDVPNNNRIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQDSHL-------QACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAAL--NASDGDCLAAALWHQGESDRPKFA---AYEGAWTEIVTTLRDSNPAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESNEGGDNIHLSAACQRRYAERYYASLNAVIYN 755
            +G+GYD N+D PN+ RI+QW+R NT+ITA E  +            +V+++ +       +A +E LP  RNVL V T    T LV GPW+  G  F  AV R  AAL  N + G+C+AA LWHQGESD         Y+  WT+++ TLR   PAA   PV+LGE TP          +PI   +R IPD+ PFT +APS GL SN G D +H +AA QR Y +RY+  L   + N
Sbjct:   49 RGQGYDANIDGPNDPRIQQWSRANTVITASEHLQHADFA-------IVEETRVGMGTAFGRAYVETLPAKRNVLLVSTGYGGTRLVNGPWSPGGRLFEDAVRRTEAALASNGATGNCVAAVLWHQGESDAIAGVDQETYQFTWTDMINTLRSRIPAAAEAPVILGEFTPAWIAGNRALSEPILSAIRAIPDSVPFTVVAPSDGLSSNFG-DPVHFTAAAQREYGQRYFDKLGDAVRN 277          
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: A0A6H5JM94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM94_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 8.430e-45
Identity = 99/230 (43.04%), Postives = 127/230 (55.22%), Query Frame = 3
Query:   81 QGEGYDENLDVPNNNRIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQDSHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAAL--NASDGDCLAAALWHQGESDRPKFA---AYEGAWTEIVTTLRDSNPAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESNEGGDNIHLSAACQRRYAERYYASLNAVIYN 755
            +G+GYD N+D PN+ RI+QW+R NT+ITA E  +             +  +  +A +E LP  RNVL V T    T LV GPW+  G  F  AV R  AAL  N + G+C+AA LWHQGESD         Y+  WT ++ TLR   PAA   PV+LGE TP  T       +PI   +R IPD+ PFT +APS GL SN   D +H  A  QR Y +RY+  L   + N
Sbjct:  859 RGQGYDANIDGPNDPRIQQWSRANTVITASEHLQHADFDVVEETRVGMGTAFGRAYVETLPAKRNVLLVSTGYGGTRLVNGPWSPGGRLFEDAVRRTEAALASNGATGNCVAAVLWHQGESDAVAGVDQETYQSTWTNMINTLRSRIPAAAEAPVILGEFTPAWTAEDRARAEPILSAIRAIPDSVPFTVVAPSDGLSSNVD-DPVHFDAVGQREYGQRYFDKLGDAVRN 1087          
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Match: A0A0K8P381_IDESA (Acetylxylan esterase related enzyme n=1 Tax=Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6) TaxID=1547922 RepID=A0A0K8P381_IDESA)

HSP 1 Score: 93.6 bits (231), Expect = 9.010e-19
Identity = 77/222 (34.68%), Postives = 105/222 (47.30%), Query Frame = 3
Query:  126 RIKQWARNNTIITAFERFRTPTTRPPPMKNRLVQD-SHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLHAVARMNAALNASDGDCLAAALWHQGESDRPKF--AAYEGAWTEIVTTLRDSNPAAEN---VPVVLGELTP--YVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGLESN--EGGDN-IHLSAACQRRYAERYYASLNAVIYNV 758
            RI+QW     +  A +  + P    P    R+    S  +A L  LP  R VL VP A   TA     W      F  AV R+NAAL +  G+CLAA LW QGESD      A Y+ A   ++ TLR    A +    VP +LG+ +P        PG  + I DV+ G P    +TA+  + GL SN  +G +  +HL A+  R Y  R+Y +L   + N 
Sbjct:   87 RIQQWTMAGGMALASDPLQHPDA--PFNVGRIGPGMSFARAYLAALPTARKVLLVPAAYNGTAFSNRRWNPGDDLFEAAVTRLNAALASDGGNCLAAILWSQGESDVDTMTGAQYQAALDTMIGTLRTRIAAGQGGATVPFLLGQFSPDWIAPAPTPGQ-QAILDVINGTPGRLRYTAVVSTAGLTSNLTQGLNGAVHLDASSHRIYGRRFYEALPVALANT 305          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNI9_ECTSI1.870e-5445.41SASA domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FNI7_ECTSI3.140e-5344.54SASA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FNJ0_ECTSI7.040e-5042.62SASA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JM94_9PHAE8.430e-4543.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0K8P381_IDESA9.010e-1934.68Acetylxylan esterase related enzyme n=1 Tax=Ideone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:156283..157687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNJ0
PFAMsSASA
Model size785
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016787
Exons2
Evalue4e-40
EggNOG OGs28M03@1|root,2RGKB@2759|Eukaryota
DescriptionCarbohydrate esterase, sialic acid-specific acetylesterase
Cds size579
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791646.6822333-CDS-P-littoralis_Contig80:156282..1568611680791646.6822333-CDS-P-littoralis_Contig80:156282..156861Pylaiella littoralis U1_48CDSP-littoralis_Contig80 156283..156861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791646.69338-UTR-P-littoralis_Contig80:156861..1570191680791646.69338-UTR-P-littoralis_Contig80:156861..157019Pylaiella littoralis U1_48UTRP-littoralis_Contig80 156862..157019 -
1680791646.71102-UTR-P-littoralis_Contig80:157639..1576871680791646.71102-UTR-P-littoralis_Contig80:157639..157687Pylaiella littoralis U1_48UTRP-littoralis_Contig80 157640..157687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.21.1prot_P-littoralis_Contig80.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 156283..156861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.21.1

>prot_P-littoralis_Contig80.21.1 ID=prot_P-littoralis_Contig80.21.1|Name=mRNA_P-littoralis_Contig80.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=193bp
MKNRLVQDSHLQACLEDLPENRNVLFVPTAAQNTALVAGPWASKGSYFLH
AVARMNAALNASDGDCLAAALWHQGESDRPKFAAYEGAWTEIVTTLRDSN
PAAENVPVVLGELTPYVTENGPGYWKPINDVLRGIPDNHPFTALAPSHGL
ESNEGGDNIHLSAACQRRYAERYYASLNAVIYNVDEYNRHIN*
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mRNA from alignment at P-littoralis_Contig80:156283..157687-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.21.1 ID=mRNA_P-littoralis_Contig80.21.1|Name=mRNA_P-littoralis_Contig80.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1405bp|location=Sequence derived from alignment at P-littoralis_Contig80:156283..157687- (Pylaiella littoralis U1_48)
ATTTCAGCTGACTGTTTAATGAGAAGAGGCGTCAATGGATCGGATGTGGT GAGTGAGAGGTGGACATCGATTTTCCATCGCATTGAGATTTCCCCTGGTG CACGGCCCTGTGTTTATGCCCGGGGTATCACCTGCTAGTTGAAAGTATGG CTTTTCAACCCCCTGTACAAGGCGCATGCATTTGAGGACCTGCCTGCCAG CGGCCTGTCCGTCTGGCTTAAAGCCTGTTCAACGCGGCGGGTTCCGTAAC AAAGGCTACGTACGACGAACAGAACGCAGCCGACTTCCGCGTTGAAGCCT CACTTTGACAAAAGTGTTGTGAATCTGTACTTTTCGAAGGGCCACTTTTT GCGTTCGTCGCGCGTGTGTTTACCCCCGATACTGACCAACAAGGGTTGTC GTGGAGCGTGCAATGGACCAAAGTCATACTTCATACAAGTGTAGTATTGT ATCATTCATGTCAGGATACTCGAATCGTTCGTCACCAGAAATTCTTACGT TCCTCCTATACAACATGCGGTAAACAAGTAACGCGGATTCGAAGCCTGCC CTCGCCGTTTCCACCCTGTAGCGCCCAACCACGGTCATTCGTAGAGTATG TAGCACCTCAACGACACCCGTCGTTCCTTCCGGACCCTAGTGGCCTTCCC CCCGAGAGATGAACAAAGGTACTGCTTATGGGGCAGTCAAACGTGTCCGG CAAGGGGAAGGCTACGACGAAAACCTCGATGTCCCAAACAACAACCGCAT CAAGCAGTGGGCGCGGAACAACACGATCATCACGGCGTTCGAACGGTTCA GGACGCCGACTACGCGACCACCCCCGATGAAGAACAGATTGGTCCAGGAC TCGCATTTGCAAGCATGCCTGGAGGACCTGCCGGAGAACCGCAATGTTCT TTTCGTACCGACCGCGGCGCAGAATACTGCGCTGGTGGCCGGGCCGTGGG CCTCAAAAGGTTCCTATTTCCTTCATGCCGTGGCCCGCATGAACGCCGCG CTGAATGCATCGGACGGGGACTGCCTCGCGGCTGCGTTGTGGCATCAGGG TGAGTCGGATAGGCCCAAGTTCGCCGCGTACGAGGGGGCCTGGACGGAGA TTGTAACCACGCTGAGGGACAGCAACCCCGCGGCAGAAAACGTCCCGGTG GTCCTCGGCGAACTCACGCCTTATGTGACCGAAAATGGTCCGGGATACTG GAAGCCGATTAACGACGTTCTCCGAGGCATCCCTGACAATCACCCGTTCA CGGCGTTGGCGCCTTCTCATGGCCTTGAGAGCAACGAAGGCGGCGATAAT ATTCACTTAAGTGCTGCATGCCAGCGTAGATATGCGGAGCGGTACTATGC ATCGCTCAATGCAGTCATCTATAACGTTGATGAGTATAACAGGCATATCA ATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:156283..157687-

>mRNA_P-littoralis_Contig80.21.1 ID=mRNA_P-littoralis_Contig80.21.1|Name=mRNA_P-littoralis_Contig80.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig80:156283..157687- (Pylaiella littoralis U1_48)
ATGAAGAACAGATTGGTCCAGGACTCGCATTTGCAAGCATGCCTGGAGGA
CCTGCCGGAGAACCGCAATGTTCTTTTCGTACCGACCGCGGCGCAGAATA
CTGCGCTGGTGGCCGGGCCGTGGGCCTCAAAAGGTTCCTATTTCCTTCAT
GCCGTGGCCCGCATGAACGCCGCGCTGAATGCATCGGACGGGGACTGCCT
CGCGGCTGCGTTGTGGCATCAGGGTGAGTCGGATAGGCCCAAGTTCGCCG
CGTACGAGGGGGCCTGGACGGAGATTGTAACCACGCTGAGGGACAGCAAC
CCCGCGGCAGAAAACGTCCCGGTGGTCCTCGGCGAACTCACGCCTTATGT
GACCGAAAATGGTCCGGGATACTGGAAGCCGATTAACGACGTTCTCCGAG
GCATCCCTGACAATCACCCGTTCACGGCGTTGGCGCCTTCTCATGGCCTT
GAGAGCAACGAAGGCGGCGATAATATTCACTTAAGTGCTGCATGCCAGCG
TAGATATGCGGAGCGGTACTATGCATCGCTCAATGCAGTCATCTATAACG
TTGATGAGTATAACAGGCATATCAATTGA
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