mRNA_P-littoralis_Contig8.253.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A6H5KBH7_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH7_9PHAE) HSP 1 Score: 269 bits (688), Expect = 1.350e-87 Identity = 139/193 (72.02%), Postives = 162/193 (83.94%), Query Frame = 1
Query: 157 TQSLAPSSATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETKRG-GFITAANYQTGDGLVFNVGTAGKAKAIGDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRVGDAGMIK 732
TQ +PS+ATTPTTVVNSVLSAYG+PMI+ +G FTSSYVK++D Q T+CA+AYP WVE K+ GF TAANYQTGD L N+G KAK IGD+S L I A+ATPSEG AK+L+E VTKGGVNYTY+TVKYNTVTRSGYDVER+SYIAATV+QR+L TLVATVS ERRNKMDL L AI+ASFRVGD G+++
Sbjct: 61 TQGPSPSAATTPTTVVNSVLSAYGIPMIAEDGGFTSSYVKVEDNGQETVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGAPSKAKTIGDVSALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERVSYIAATVKQRKLLTLVATVSGERRNKMDLILKAIQASFRVGDVGVVE 253
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: D7FKW7_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW7_ECTSI) HSP 1 Score: 239 bits (609), Expect = 7.540e-77 Identity = 121/167 (72.46%), Postives = 141/167 (84.43%), Query Frame = 1
Query: 235 MISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETKRG-GFITAANYQTGDGLVFNVGTAGKAKAIGDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRVGDAGMIK 732
MI+ +G FTSSYVK++D Q T+CA+AYP WVE K+ GF TAANYQTGD L N+GT KAK IGD+ L I A+ATPSEG AK+L+E VTKGGVNYTY+TVKYNTVTRSGYDVERISYIAATV+QR+L+TLVATVSSERRNKMDL LNAI+ASFRVGD G+++
Sbjct: 1 MIAEDGDFTSSYVKVEDNGQGTVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGTPSKAKTIGDVGALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNKMDLILNAIQASFRVGDVGVVE 167
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A7S2UUM0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUM0_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.820e-20 Identity = 62/187 (33.16%), Postives = 100/187 (53.48%), Query Frame = 1
Query: 181 ATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDD--GEQSTICAFAYPANWVETKRGGFITAANYQTGDGLVFNVGTAGK--AKAIGDLSTLDIV-----ADATPSEGVAKILREVPVTK-GGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRV 711
AT +VVNSVL AYG+P + +E F + + + G I +FAYP WVET +G + A+NYQTGD +V G+ +++ D+ ++ DAT + K++++ + Y VT+K+NT+T SGYDVE+ + T+ + L+ L A+ + R+ KM+ + SFR
Sbjct: 8 ATDSMSVVNSVLGAYGVPYMDSEIGFAALFEETTAPYGGAKAIISFAYPKTWVETTKGRTLGASNYQTGDRVVLVTKAKGQYDGRSVMDIPVQELAEVITPGDATQAASAYKVMKDEQLASMKSQEYRLVTLKFNTITSSGYDVEQYLVASCTLSKGNLFCLAASCPTARKKKMEESITKTALSFRA 194
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A8J9WM49_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WM49_9CHLO) HSP 1 Score: 70.1 bits (170), Expect = 7.610e-11 Identity = 72/230 (31.30%), Postives = 110/230 (47.83%), Query Frame = 1
Query: 100 QIMFEAVLQQLSSRSRLLLTQSLAP-----SSATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKL-DDGEQSTICAFAYPANWV----ETKRGGFITAANYQTGDGLVFNVGTAGKAKAIGDLSTLDIVADA-----TPSE---GVAKIL----REVPVTK---GGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLE-LNAIRASFRV 711
Q+ +L R LLL+ +L S PTTV+NSVL AYG+P + G F KL DD +Q I F YP +WV ++G +++ ++ T D V V + S+ D+V + +P + G A+++ R + G+ YTY+ TVTRSGY + R ++ A + +Y+LVA+ S++ NK E L + ASFRV
Sbjct: 9 QVCISCSSVELGRRQHLLLSVNLGVLGSQLSGTDDPTTVLNSVLGAYGLPQLPGSGGF-----KLYDDFDQEYI--FEYPRSWVGRSNSLRQGVYVS--DFNTADKAVVEV--------FPEPSSADLVLEVVRRAVSPGQEIGGDARLILPDERRIKTETRDIDGMRYTYIRFPSETVTRSGYQIRRKNFAVAAAKGGTVYSLVASARSDQYNKAKEEVLQRVVASFRV 221
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A2V0NNW9_9CHLO (Photosystem II oxygen evolving complex n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NNW9_9CHLO) HSP 1 Score: 66.6 bits (161), Expect = 2.200e-9 Identity = 59/192 (30.73%), Postives = 98/192 (51.04%), Query Frame = 1
Query: 193 TTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWV----ETKRGGFITAANYQTGDGLVF---------NVGTAGKAKAI----GDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLEL--NAIRASFRV 711
TT+VNSVL AYG+P + K ++ Y DD S +F YP WV +RG + +++QT D + ++ A A A+ G L+ D++ P++G ++ E T G Y Y+ T+TRSGY + R ++ AA +R+ +L+ + A+V ++ N+ EL + +R SFR+
Sbjct: 85 TTIVNSVLGAYGLPTL----KASAGYKVWDDF--SDEWSFEYPRGWVARRNSLRRG--VVISDFQTADKVAVEELDPPPDGDLAAAAVAAAVLPGGGRLTQDDVLG--LPAKGAVRVAAE---TVDGQEYLYLEFPSETITRSGYQIRRRNFAAAALRRGKLFVIAASVRGDQYNEAKRELLEHTVR-SFRL 262
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A5J4YSH8_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSH8_PORPP) HSP 1 Score: 62.8 bits (151), Expect = 5.280e-8 Identity = 56/189 (29.63%), Postives = 86/189 (45.50%), Query Frame = 1
Query: 196 TVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETKRGGFITAA-----------NYQTGDGLVFNVGTAG------KAKAIGDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRV 711
TVVN+ LS YG+P+ G +T+ + DDG F YP +WV ++ G ++AA NY+T D VG A ++ +L+ L + DAT ++R+ + + K+N+ TRSGYDVER + +ATV + + L + S R L I SF+
Sbjct: 84 TVVNAALSGYGIPVQDVAG-YTTFVHQWDDG---LFVKFQYPKSWVVSRVGSSLSAAPGKAVSPVSMSNYRTADQCALYVGPPQPKYRDISAVSVEELTALVLPGDATRDYSEYTLIRQA-ASAANASCKQYEFKFNSTTRSGYDVERYNVTSATVLKTCVVALSCSCVSNRIKSQAPALKLIADSFQA 267
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A383W3H0_TETOB (PsbP domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3H0_TETOB) HSP 1 Score: 59.3 bits (142), Expect = 1.100e-6 Identity = 63/210 (30.00%), Postives = 101/210 (48.10%), Query Frame = 1
Query: 139 RSRLLLTQSLAPS------SATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETK---RGGFITAANYQTGDGLVF---------NVGTAGKAKAIGDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLEL-NAIRASFRV 711
R +LLL +LAP + TT+VNSVLSAYG+P + K ++ + D+ E F YP WV + R G + +++QT D + ++ A A A+ +V D S A++++ T G Y+ T+TRSGY++ R ++ AA V+ +LYT+ A+ S++ N+ L I SFR+
Sbjct: 116 RRQLLLRSTLAPFLVQLVLGSDDATTIVNSVLSAYGLPTL----KASAGFRVYDEFEDEFY--FEYPKAWVSRRNSMRKG-VVISDFQTADKVSVEELELPEDGDIAAAAVAAAVLP-GGRRLVQDDVLSLPAARLVKTHTETIDGQEMLYLEFPSETLTRSGYNIRRKNFAAAAVKLDKLYTIAASARSDQFNEEKKTLLQHIVESFRL 317
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A7S3A2S0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2S0_9RHOD) HSP 1 Score: 57.0 bits (136), Expect = 4.830e-6 Identity = 57/203 (28.08%), Postives = 92/203 (45.32%), Query Frame = 1
Query: 169 APSSATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETKRGGFITAANYQTGDGLV--FNVGTAGKAKAIGDLST-------LDIVADATPSEGVA------KILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRVGDAGMIK 732
A + A + +VVN VLSAYG+P I ++G FT L++ I F YP+ W+ TK I D +V N+G KA+++ ST D+ D + ++L++ + G Y + K++T T SGY ER + +A+TV ++ L S R K++ L +F+V +K
Sbjct: 58 ASAEAVSGRSVVNGVLSAYGLPQIPDKGGFTPI---LEEYGSDKIVEFLYPSAWLVTKEQSGIDRPRLNQ-DRVVPTINIGDYRKAESLAFYSTPASGKGTFDVPIDKLAKIAIQLPNPDYRMLKDKKIATNG--YRLTSFKFDTYTTSGYMGERRALVASTVIDDTVFLLGGVCSELRYKKVEELLLTAMENFKVTKVQSLK 254 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig8.253.1 >prot_P-littoralis_Contig8.253.1 ID=prot_P-littoralis_Contig8.253.1|Name=mRNA_P-littoralis_Contig8.253.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=248bp WPCLLQACHSIPFRFPGHGRAKVLLQCHSSSPGQIMFEAVLQQLSSRSRLback to top mRNA from alignment at P-littoralis_Contig8:1070444..1074165+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig8.253.1 ID=mRNA_P-littoralis_Contig8.253.1|Name=mRNA_P-littoralis_Contig8.253.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3722bp|location=Sequence derived from alignment at P-littoralis_Contig8:1070444..1074165+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig8:1070444..1074165+ >mRNA_P-littoralis_Contig8.253.1 ID=mRNA_P-littoralis_Contig8.253.1|Name=mRNA_P-littoralis_Contig8.253.1|organism=Pylaiella littoralis U1_48|type=CDS|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig8:1070444..1074165+ (Pylaiella littoralis U1_48)back to top |