mRNA_P-littoralis_Contig8.253.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.253.1
Unique NamemRNA_P-littoralis_Contig8.253.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A6H5KBH7_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH7_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 1.350e-87
Identity = 139/193 (72.02%), Postives = 162/193 (83.94%), Query Frame = 1
Query:  157 TQSLAPSSATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETKRG-GFITAANYQTGDGLVFNVGTAGKAKAIGDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRVGDAGMIK 732
            TQ  +PS+ATTPTTVVNSVLSAYG+PMI+ +G FTSSYVK++D  Q T+CA+AYP  WVE K+  GF TAANYQTGD L  N+G   KAK IGD+S L I A+ATPSEG AK+L+E  VTKGGVNYTY+TVKYNTVTRSGYDVER+SYIAATV+QR+L TLVATVS ERRNKMDL L AI+ASFRVGD G+++
Sbjct:   61 TQGPSPSAATTPTTVVNSVLSAYGIPMIAEDGGFTSSYVKVEDNGQETVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGAPSKAKTIGDVSALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERVSYIAATVKQRKLLTLVATVSGERRNKMDLILKAIQASFRVGDVGVVE 253          
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: D7FKW7_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW7_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 7.540e-77
Identity = 121/167 (72.46%), Postives = 141/167 (84.43%), Query Frame = 1
Query:  235 MISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETKRG-GFITAANYQTGDGLVFNVGTAGKAKAIGDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRVGDAGMIK 732
            MI+ +G FTSSYVK++D  Q T+CA+AYP  WVE K+  GF TAANYQTGD L  N+GT  KAK IGD+  L I A+ATPSEG AK+L+E  VTKGGVNYTY+TVKYNTVTRSGYDVERISYIAATV+QR+L+TLVATVSSERRNKMDL LNAI+ASFRVGD G+++
Sbjct:    1 MIAEDGDFTSSYVKVEDNGQGTVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGTPSKAKTIGDVGALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNKMDLILNAIQASFRVGDVGVVE 167          
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A7S2UUM0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUM0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.820e-20
Identity = 62/187 (33.16%), Postives = 100/187 (53.48%), Query Frame = 1
Query:  181 ATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDD--GEQSTICAFAYPANWVETKRGGFITAANYQTGDGLVFNVGTAGK--AKAIGDLSTLDIV-----ADATPSEGVAKILREVPVTK-GGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRV 711
            AT   +VVNSVL AYG+P + +E  F + + +     G    I +FAYP  WVET +G  + A+NYQTGD +V      G+   +++ D+   ++       DAT +    K++++  +       Y  VT+K+NT+T SGYDVE+    + T+ +  L+ L A+  + R+ KM+  +     SFR 
Sbjct:    8 ATDSMSVVNSVLGAYGVPYMDSEIGFAALFEETTAPYGGAKAIISFAYPKTWVETTKGRTLGASNYQTGDRVVLVTKAKGQYDGRSVMDIPVQELAEVITPGDATQAASAYKVMKDEQLASMKSQEYRLVTLKFNTITSSGYDVEQYLVASCTLSKGNLFCLAASCPTARKKKMEESITKTALSFRA 194          
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A8J9WM49_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WM49_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 7.610e-11
Identity = 72/230 (31.30%), Postives = 110/230 (47.83%), Query Frame = 1
Query:  100 QIMFEAVLQQLSSRSRLLLTQSLAP-----SSATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKL-DDGEQSTICAFAYPANWV----ETKRGGFITAANYQTGDGLVFNVGTAGKAKAIGDLSTLDIVADA-----TPSE---GVAKIL----REVPVTK---GGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLE-LNAIRASFRV 711
            Q+       +L  R  LLL+ +L       S    PTTV+NSVL AYG+P +   G F     KL DD +Q  I  F YP +WV      ++G +++  ++ T D  V  V          + S+ D+V +      +P +   G A+++    R +        G+ YTY+     TVTRSGY + R ++  A  +   +Y+LVA+  S++ NK   E L  + ASFRV
Sbjct:    9 QVCISCSSVELGRRQHLLLSVNLGVLGSQLSGTDDPTTVLNSVLGAYGLPQLPGSGGF-----KLYDDFDQEYI--FEYPRSWVGRSNSLRQGVYVS--DFNTADKAVVEV--------FPEPSSADLVLEVVRRAVSPGQEIGGDARLILPDERRIKTETRDIDGMRYTYIRFPSETVTRSGYQIRRKNFAVAAAKGGTVYSLVASARSDQYNKAKEEVLQRVVASFRV 221          
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A2V0NNW9_9CHLO (Photosystem II oxygen evolving complex n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NNW9_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 2.200e-9
Identity = 59/192 (30.73%), Postives = 98/192 (51.04%), Query Frame = 1
Query:  193 TTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWV----ETKRGGFITAANYQTGDGLVF---------NVGTAGKAKAI----GDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLEL--NAIRASFRV 711
            TT+VNSVL AYG+P +    K ++ Y   DD   S   +F YP  WV      +RG  +  +++QT D +           ++  A  A A+    G L+  D++    P++G  ++  E   T  G  Y Y+     T+TRSGY + R ++ AA +R+ +L+ + A+V  ++ N+   EL  + +R SFR+
Sbjct:   85 TTIVNSVLGAYGLPTL----KASAGYKVWDDF--SDEWSFEYPRGWVARRNSLRRG--VVISDFQTADKVAVEELDPPPDGDLAAAAVAAAVLPGGGRLTQDDVLG--LPAKGAVRVAAE---TVDGQEYLYLEFPSETITRSGYQIRRRNFAAAALRRGKLFVIAASVRGDQYNEAKRELLEHTVR-SFRL 262          
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A5J4YSH8_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSH8_PORPP)

HSP 1 Score: 62.8 bits (151), Expect = 5.280e-8
Identity = 56/189 (29.63%), Postives = 86/189 (45.50%), Query Frame = 1
Query:  196 TVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETKRGGFITAA-----------NYQTGDGLVFNVGTAG------KAKAIGDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRV 711
            TVVN+ LS YG+P+    G +T+   + DDG       F YP +WV ++ G  ++AA           NY+T D     VG          A ++ +L+ L +  DAT       ++R+   +    +      K+N+ TRSGYDVER +  +ATV +  +  L  +  S R       L  I  SF+ 
Sbjct:   84 TVVNAALSGYGIPVQDVAG-YTTFVHQWDDG---LFVKFQYPKSWVVSRVGSSLSAAPGKAVSPVSMSNYRTADQCALYVGPPQPKYRDISAVSVEELTALVLPGDATRDYSEYTLIRQA-ASAANASCKQYEFKFNSTTRSGYDVERYNVTSATVLKTCVVALSCSCVSNRIKSQAPALKLIADSFQA 267          
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A383W3H0_TETOB (PsbP domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3H0_TETOB)

HSP 1 Score: 59.3 bits (142), Expect = 1.100e-6
Identity = 63/210 (30.00%), Postives = 101/210 (48.10%), Query Frame = 1
Query:  139 RSRLLLTQSLAPS------SATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETK---RGGFITAANYQTGDGLVF---------NVGTAGKAKAIGDLSTLDIVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLEL-NAIRASFRV 711
            R +LLL  +LAP        +   TT+VNSVLSAYG+P +    K ++ +   D+ E      F YP  WV  +   R G +  +++QT D +           ++  A  A A+       +V D   S   A++++    T  G    Y+     T+TRSGY++ R ++ AA V+  +LYT+ A+  S++ N+    L   I  SFR+
Sbjct:  116 RRQLLLRSTLAPFLVQLVLGSDDATTIVNSVLSAYGLPTL----KASAGFRVYDEFEDEFY--FEYPKAWVSRRNSMRKG-VVISDFQTADKVSVEELELPEDGDIAAAAVAAAVLP-GGRRLVQDDVLSLPAARLVKTHTETIDGQEMLYLEFPSETLTRSGYNIRRKNFAAAAVKLDKLYTIAASARSDQFNEEKKTLLQHIVESFRL 317          
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Match: A0A7S3A2S0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2S0_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 4.830e-6
Identity = 57/203 (28.08%), Postives = 92/203 (45.32%), Query Frame = 1
Query:  169 APSSATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQSTICAFAYPANWVETKRGGFITAANYQTGDGLV--FNVGTAGKAKAIGDLST-------LDIVADATPSEGVA------KILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYIAATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRVGDAGMIK 732
            A + A +  +VVN VLSAYG+P I ++G FT     L++     I  F YP+ W+ TK    I        D +V   N+G   KA+++   ST        D+  D      +       ++L++  +   G  Y   + K++T T SGY  ER + +A+TV    ++ L    S  R  K++  L     +F+V     +K
Sbjct:   58 ASAEAVSGRSVVNGVLSAYGLPQIPDKGGFTPI---LEEYGSDKIVEFLYPSAWLVTKEQSGIDRPRLNQ-DRVVPTINIGDYRKAESLAFYSTPASGKGTFDVPIDKLAKIAIQLPNPDYRMLKDKKIATNG--YRLTSFKFDTYTTSGYMGERRALVASTVIDDTVFLLGGVCSELRYKKVEELLLTAMENFKVTKVQSLK 254          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KBH7_9PHAE1.350e-8772.02PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FKW7_ECTSI7.540e-7772.46PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2UUM0_9STRA1.820e-2033.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J9WM49_9CHLO7.610e-1131.30Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A2V0NNW9_9CHLO2.200e-930.73Photosystem II oxygen evolving complex n=1 Tax=Rap... [more]
A0A5J4YSH8_PORPP5.280e-829.63Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A383W3H0_TETOB1.100e-630.00PsbP domain-containing protein n=1 Tax=Tetradesmus... [more]
A0A7S3A2S0_9RHOD4.830e-628.08Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:1070444..1074165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3067.XP_002946106.1
PFAMsPsbP
Model size745
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.02e-12
EggNOG OGs2EJ5G@1|root,2SPE2@2759|Eukaryota,3805S@33090|Viridiplantae,34KZB@3041|Chlorophyta
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791643.2606897-CDS-P-littoralis_Contig8:1070443..10706441680791643.2606897-CDS-P-littoralis_Contig8:1070443..1070644Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1070444..1070644 +
1680791643.2735934-CDS-P-littoralis_Contig8:1073409..10736971680791643.2735934-CDS-P-littoralis_Contig8:1073409..1073697Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1073410..1073697 +
1680791643.283427-CDS-P-littoralis_Contig8:1073910..10741651680791643.283427-CDS-P-littoralis_Contig8:1073910..1074165Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1073911..1074165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.253.1prot_P-littoralis_Contig8.253.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 1070444..1074165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.253.1

>prot_P-littoralis_Contig8.253.1 ID=prot_P-littoralis_Contig8.253.1|Name=mRNA_P-littoralis_Contig8.253.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=248bp
WPCLLQACHSIPFRFPGHGRAKVLLQCHSSSPGQIMFEAVLQQLSSRSRL
LLTQSLAPSSATTPTTVVNSVLSAYGMPMISNEGKFTSSYVKLDDGEQST
ICAFAYPANWVETKRGGFITAANYQTGDGLVFNVGTAGKAKAIGDLSTLD
IVADATPSEGVAKILREVPVTKGGVNYTYVTVKYNTVTRSGYDVERISYI
AATVRQRRLYTLVATVSSERRNKMDLELNAIRASFRVGDAGMIKAFE*
back to top

mRNA from alignment at P-littoralis_Contig8:1070444..1074165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.253.1 ID=mRNA_P-littoralis_Contig8.253.1|Name=mRNA_P-littoralis_Contig8.253.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3722bp|location=Sequence derived from alignment at P-littoralis_Contig8:1070444..1074165+ (Pylaiella littoralis U1_48)
TGGCCATGCTTGCTCCAAGCCTGTCATTCAATTCCCTTCCGTTTCCCAGG CCATGGAAGAGCCAAAGTGTTACTACAATGTCACTCAAGCTCCCCAGGGC AGATTATGTTCGAGGCTGTGTTGCAGCAGCTGTCATCGCGGTCGCGTCTA CTACTTACTCAAAGCCTGGCTCCTTCATCAGCAACCACTCCTACTACGGT GGTGAGTAGCCGGGTACACATACCAGTTATGCCGAATGATGGTGACTACT ACTGTAGGTCACGTCATGAGGTAATTGCAAGCCATGCATGATGCCCGAAC AACATCATCATCAGTTAGTTAGCTGCTGCCATGAAACGGTCAGGTTGAAC CAGCAGAGCAAATATACTGCGTGCACATATGATTCATGATAACACGATCG ATCCGGGATCTTTCTTATGTCATACTCCGTATGTAGTTGGAGCGTCGACC TACCCGAAAGGTGCAGAGTGGCGTCAACACACACAACACACATGCGTGAG GGTGGAAAGCGATTCATTCGTGAGTAAACAAAATTCGAAGTGTCGACGAG GGAAAGGGATCGCTGTACCCTTCCTCGCGCTCATATCTATTTCATCTAGA GAGAGAAAAACATCCTGATAGTGTTGAAATACGGAGTAGTTCTTCTACGA AGTCCTGCTGCTCTAGGAGAGGTACCCGGACACGCGGGCGGGTGCTTTTT TTACCTTTTTTTCTTGCGATTTGTCTACGAAAAGTAGTACTCTGCTCTTC TCGTTCTAATGTTTTTTCAGATCTTTCCGTCGAAAGAAAAGGATGTATCA CATGCGAAACTCTGTGGGAAGGGATCGTGAACTCAGCGCAAAAAACGCTT CGAAAATCGAGCCCTTTTTCAACGAGATGTGCCCAAATAAGTGTGTGGGT GTGTGACACTTGCATGATATTGGGAAAAAACAATTATTGGCCGCGACCGC AACGCCTCTTCCCATTTTATTCGCGCTCCGCCCGAATATATATATCTCTT CCCCGCGTAGCTCTACCCATGGTCGCTGAGCCCAACTCGCGTGAACATTA TTCGACCATCCCGAAAAACAAACCGTCATTTCAAATTCCTAGCCACAGGC TTCATCCCGAAAATAACCCCACCCAGCAGCCCACCAGCTTCAGCAAGGAT CAGTCGAATCCACTCCTTTTTGTGTGGACTCAACAGAAGAGCCCAAGCTG GTGACCTCCTTGTAGTCTTCGTCGTCTTCATTCTCCTCGTCCTCCTCGAA CGACTGATCCGCGTTCAGCGTGTGGATGAGATTACCCATCGACTTTTGCC TCGTCTGCATCCTTACCCCGTGGGTTTCGGGGAATAGGTCTTCGTCGTCT CCCACTTTGCTCACCTGGATTATTGATTGAACGGAGAATGCAATCATCAT CATAGAAACTGAAGAAGTCTAGTGTTTTGTCTCTCGCAGCTCCCTGCATC CTTACAGAGCCGGGGACAGAGCATGCTGGGATTTTAGTTTACGATATAGG GCTAGTTTCCGTGAGGTGTTCGGCGAGTGGCAGGAAATGCGTGCTAAATT TCCCGAAAAGCGTGTGTGAGCCAGGCTTCACTACTGCATGTTGCAGATAT ATTAAATGAGGAGAGATTTCCGGATGATCTAATGTGTTGTCATCCCATGT TCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCCCATCGACGGGGTC ACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGC GGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCGGTCCCTACC CTCGTCGGCGAAGCCGAATCTGATTTTACTAACAGCATAGCCGCTTTCAA AGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCCGTTCCTCTGCAT CTAGTGGTTAACGAGGGACCACTAGAGCTTTTTCTGGGGTGACCTTGATC AGAGGCAGCCTCGTTCGTGAGTGCCTGTGACCTAATGCGTCAAGGACGCA GGATGATTATTTTCCTTGTCCAGAGTGAATGCGCCACTCCTTCCCGCACG AATTTGGTTCGACTCGGTCATGGTATTCACGGACAATCCGCAGGCCGCAC GTACGGTCATTCAACAGGCAAACACCAAATAATTTTTCAGCAAAGCCCTT GTAGGAGCTTGTTTCCCGTGGCGATATCACTCTCACAGCACCGGAACGGC TGGATGGGATTCTATAAAGAGAACACCCATAAGAATGCCGCGAAGCATAT GATATGGACGGTTTTGTTTTGGGTTTGACAGCAGAAGGCTGCCATAAACG TTGAAGAAGTTAACTTTGTGCGGGTGTTCTCGATACCCATAGCGACTACT CAAAGCGCTCCTATCGAGCAATTAAGACGCACTAATACCGGTTGGAGCGT CTACCTACTACCCGAGAGGTGAAGAGTGGCGTCCAGTCAAAGGGATGACA ACACACACACAACACATAATGAGTGCTGTGTGGCAGTACAGCAGTATACC TGGTAGTTTTCAGGTGTGTTCGTCTTGAGGATTTACAGCAGTTTCATGAA CAACTAACTGAATAGTGAATATCTGCAAGAAGAGGGATAGACTGCAATCA TTCATACCAGACACACATGGCGCTGCCAAATCACCCCCAATCACGAAAGC TTCGTTGGATAGGATTTCCCCCAAAGTCTACCAGGAGTGTCCCGATCACA ACTTCTCTCTGCGGATTATTTCCATTACATTATGCTATTCATAACCGTTT CCTCGCGCAGGCTTTCGCCGTGCAACGTTTTCTACCGCATCTTTGAGTTT GGTAGCAGCATCATGCTTTGAAGTACTGCAGTACTCTGTATACATAGTTA CCCACGGGGGCAACAGATCTACCATGACGGCTGAGCTACGACAACTACAA ACCCTGTGGCGAGGTGACTAATTTTGGCGGATCCCTGTCGTGTCCTCCTC TGACTCCGCACAACAGGTAAACAGTGTGCTCTCCGCCTACGGCATGCCCA TGATCAGCAACGAGGGTAAATTCACATCTTCATACGTCAAATTGGATGAC GGGGAGCAAAGCACAATCTGTGCATTCGCGTATCCTGCGAACTGGGTCGA GACGAAGAGAGGTGGGTTCATAACGGCTGCCAACTACCAAACGGGGGACG GTTTGGTCTTCAACGTGGGTACAGCCGGGAAGGCGAAAGCTATCGGAGAT TTAAGCACCCTTGACATTGTGGCGGATGCAACACCATCGGAGGGAGTTGC GAAGGTAAAATCGTCACTGGGACACTTGACACTTGGCATGAGAAGTTCAA CTTTCTTACTACTCTCCAACAGATTCTGTGTTAATGGGAAAGTGACCTGC TGCTCCATGAATTCTTGCCAGTACTGCACTGCTGTTGTACTCGACATCGT GTACAAGTACACGAAACGTTTTACCCGCGATCGTGCTGACTCCCTAAACG AACCCTTTCCATCGCAGATTCTGCGAGAGGTTCCTGTGACTAAAGGAGGC GTGAATTACACGTACGTGACCGTGAAGTACAACACCGTCACTAGGTCAGG CTACGATGTAGAAAGGATCTCGTACATTGCGGCAACTGTGAGGCAGCGGA GGCTCTACACTCTGGTGGCGACTGTCTCAAGCGAGCGACGCAACAAGATG GACTTAGAGTTGAACGCGATCAGAGCATCATTTCGTGTGGGAGACGCCGG CATGATCAAGGCCTTCGAATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig8:1070444..1074165+

>mRNA_P-littoralis_Contig8.253.1 ID=mRNA_P-littoralis_Contig8.253.1|Name=mRNA_P-littoralis_Contig8.253.1|organism=Pylaiella littoralis U1_48|type=CDS|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig8:1070444..1074165+ (Pylaiella littoralis U1_48)
TGGCCATGCTTGCTCCAAGCCTGTCATTCAATTCCCTTCCGTTTCCCAGG
CCATGGAAGAGCCAAAGTGTTACTACAATGTCACTCAAGCTCCCCAGGGC
AGATTATGTTCGAGGCTGTGTTGCAGCAGCTGTCATCGCGGTCGCGTCTA
CTACTTACTCAAAGCCTGGCTCCTTCATCAGCAACCACTCCTACTACGGT
GGTAAACAGTGTGCTCTCCGCCTACGGCATGCCCATGATCAGCAACGAGG
GTAAATTCACATCTTCATACGTCAAATTGGATGACGGGGAGCAAAGCACA
ATCTGTGCATTCGCGTATCCTGCGAACTGGGTCGAGACGAAGAGAGGTGG
GTTCATAACGGCTGCCAACTACCAAACGGGGGACGGTTTGGTCTTCAACG
TGGGTACAGCCGGGAAGGCGAAAGCTATCGGAGATTTAAGCACCCTTGAC
ATTGTGGCGGATGCAACACCATCGGAGGGAGTTGCGAAGATTCTGCGAGA
GGTTCCTGTGACTAAAGGAGGCGTGAATTACACGTACGTGACCGTGAAGT
ACAACACCGTCACTAGGTCAGGCTACGATGTAGAAAGGATCTCGTACATT
GCGGCAACTGTGAGGCAGCGGAGGCTCTACACTCTGGTGGCGACTGTCTC
AAGCGAGCGACGCAACAAGATGGACTTAGAGTTGAACGCGATCAGAGCAT
CATTTCGTGTGGGAGACGCCGGCATGATCAAGGCCTTCGAATGA
back to top