mRNA_P-littoralis_Contig8.164.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: D8LBH4_ECTSI (COP9 signalosome complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH4_ECTSI) HSP 1 Score: 541 bits (1395), Expect = 1.240e-185 Identity = 286/326 (87.73%), Postives = 296/326 (90.80%), Query Frame = 1
Query: 1 MEVDACPDMGVEEKKGEEPAVPAATAAVSAERTQKGKGEGDRNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHMLDGRSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSSIDLHAGAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKFMAAFGHRRAI 978
MEVDA GVEEKKGEE VPA A+ G+ NIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNG DVSIYDAMEVACTAVGA+GL LNEALVEKQK+LYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNS+PLFLLMNPSPAQGSKELPVLIHESESHMLDG +QS FVQL FQLETTQAEQISVEHVAKATPTDG+SSIDLHAGAVSTSLRTLLARIEILRRFLEETK GN++VDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSV YLASVQKSAGS+NDLADKFM AFGHRR I
Sbjct: 5 MEVDA----GVEEKKGEEQKVPATAASAP--------GKKGNNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGRDVSIYDAMEVACTAVGANGLELNEALVEKQKNLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRFLEETKKGNISVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVAYLASVQKSAGSMNDLADKFMTAFGHRRPI 318
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: A0A6H5KLY7_9PHAE (JAB_MPN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY7_9PHAE) HSP 1 Score: 313 bits (803), Expect = 7.370e-99 Identity = 167/198 (84.34%), Postives = 172/198 (86.87%), Query Frame = 1
Query: 1 MEVDACPDMGVEEKKGEEPAVPAATAAVSAERTQKGKGEGDRNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHMLDGRSQSIFVQLPFQ 594
MEVDA GVEEKKGEE VPA A+ G+ NIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNG DVSIYDAMEVACTAVGA+GL LNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNS+PLFLLMNPSPAQGSKELPVLIHESESHMLDG +QS FVQL FQ
Sbjct: 5 MEVDA----GVEEKKGEEQNVPATAASAP--------GKKGNNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGRDVSIYDAMEVACTAVGANGLELNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQ 190
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: A0A7S2B7N9_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B7N9_9STRA) HSP 1 Score: 276 bits (706), Expect = 7.370e-83 Identity = 144/286 (50.35%), Postives = 193/286 (67.48%), Query Frame = 1
Query: 121 DRNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEA-LVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHM-LDGRSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSSIDLHAGAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKFMAAFGHRR 972
+R I LHPL +ITISDH T + +G + G +V+GLL+G Q GL+VSI DA E+ T +G DG+ + A V QKDLYT VY YE+LGWY+VG + D+ + R+MTK+N +P FLLM+PSP + +LP+ ++ES+ M D +FV FQL+T QAE+I++E +AKATPTDG++S+DLH ++ SLRTL R + L FL+ TK G V DY LLRQ+SSICNQLP +D A+ +F+ E+ND L V YLASV KS+ S+ DL DK A H R
Sbjct: 23 ERKIFLHPLAIITISDHFTCIESGASVKPRGSKVLGLLWGKQQGLEVSIMDAQELHYT-LGDDGVPVITAEKVNSQKDLYTEVYKNYELLGWYSVGIDADGKDMAVHREMTKYNESPFFLLMHPSPDPEASDLPISLYESKMVMGADDTPTIVFVTSEFQLQTMQAERITMERIAKATPTDGVASLDLHINSLGASLRTLNLRFDALLAFLKATKAGEVPTDYRLLRQVSSICNQLPAVDTAELKGDFITEYNDMLMVNYLASVTKSSASLGDLIDKHSAVVSHHR 307
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: A0A7S2BCI8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCI8_9STRA) HSP 1 Score: 259 bits (663), Expect = 1.800e-76 Identity = 129/283 (45.58%), Postives = 189/283 (66.78%), Query Frame = 1
Query: 103 KGKGEGDRNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEA-LVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHMLDGRSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSSIDLHAGAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKF 948
K + + LHPL +I +SDH+T + GG + G +V+GLL+G Q GL+VSI DAME+ + + A+G+ + EA V KDLY + ++LGWY+VG EV E+D+ I R+MTK+N +P FLLMNP+P + +K+LP+ ++ESE H+++ +FV FQL+T Q E+I AK +G +++DLH VS+SL+TL +R L ++LE TKNG V DY LLRQ++S+CNQLP +D + S EF+ ++ND+L V YLAS+ K +NDLA+KF
Sbjct: 24 KAAAASENKVFLHPLAIIGMSDHYTTIEAGGSLAKPGSKVLGLLWGRQQGLEVSIMDAMELGYS-LDANGVPVIEAEKVNGMKDLYLENFKDRDLLGWYSVGLEVVEMDMAIHREMTKYNESPFFLLMNPNPDEEAKDLPISLYESEMHVINDTPTMLFVTCEFQLQTMQMERIXXXXXAKEKAHEGEATLDLHMNTVSSSLKTLSSRASALVQYLEATKNGTVPTDYRLLRQVASVCNQLPAVDTDELSGEFVGDYNDTLMVNYLASITKGTNELNDLAEKF 305
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: A0A835YT38_9STRA (JAB_MPN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT38_9STRA) HSP 1 Score: 253 bits (645), Expect = 1.030e-73 Identity = 132/303 (43.56%), Postives = 198/303 (65.35%), Query Frame = 1
Query: 67 AATAAVSAERTQKGKGEGDRNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHMLDG-RSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSSIDLHAGAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTMDGAQ--------FSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKF 948
AATAA K G+G +I LHPL +ITISDH+TRVSTGGG +++G+LFG ++G ++ IYDA E+ VG + + L++A V KQ +LY AVYP Y++LGWY+VG E D+ +Q+QM + P+F+L++P P + +K LPV +++SE G + ++FVQ FQL+T QAEQI +EHVA++TP +G S+I+ HA ++TSL L +R+ +LRR+L + G+V D+ LLRQI+++ ++L M A SE R+ D+L+VT LA++QK A +++ A KF
Sbjct: 7 AATAAAEGAEESKSAGDGQLSIHLHPLAIITISDHYTRVSTGGGVPPRDAKILGVLFGERSGAEIGIYDASEIGYDVVGGE-IVLSQASVAKQVELYEAVYPTYKVLGWYSVGLEPCPSDIKLQQQMKTHCANPIFVLLDPEPPKDAKALPVTVYQSEDQAGGGGAAATVFVQGSFQLQTVQAEQIGMEHVARSTPAEGSSAIERHATTMTTSLTALASRLAVLRRYLVAVRGGDVPADHKLLRQITAVTSELRAMGNASGSGGGDAALSEALARDRCDALAVTALAALQKGAAAMDAAAHKF 308
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: A0A7S2S2E8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2E8_9STRA) HSP 1 Score: 244 bits (623), Expect = 2.030e-70 Identity = 128/294 (43.54%), Postives = 195/294 (66.33%), Query Frame = 1
Query: 76 AAVSAERTQKGKGEGDRNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGL-ALNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHMLDGRSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSSIDLHAGAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKFMA 954
A S+E G E +R I LHPL ++ +SDH T + TG + G +V+G+L+G Q GL VSI DA+E+A + A G+ ++ V +QK LY VY +E+LGWY+VG EVT +D IQ++ TK+N +P FLL+ P P +K+LP+ ++ES+ ++ + FV FQL+TTQAE+I++E V+KA+ T G+SS+DLH +S+SLR+L +R +IL +L+ + V VD+ LLR+I+S+CNQLP D + F+ +FND+L + +LA + KS+ SV++L+ KF A
Sbjct: 37 AMASSEPGTGGDPESNRKISLHPLAIVAVSDHCTGIQTGASTKPPGSKVLGILWGKQQGLQVSITDAVELAYE-LDAQGMPVIDPEAVNQQKSLYMEVYKGHEMLGWYSVGEEVTPVDGLIQQEFTKYNESPFFLLVQPVPDPEAKQLPLTLYESQWTQVNEEMKMTFVPCSFQLDTTQAERITMEAVSKASTTAGVSSMDLHVQELSSSLRSLASRTQILVSYLKAIADQQVPVDHKLLREIASVCNQLPAADAQELQGAFLSDFNDTLLINHLALITKSSNSVSELSTKFSA 329
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: A0A5D6XJP9_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJP9_9STRA) HSP 1 Score: 229 bits (585), Expect = 3.020e-65 Identity = 118/292 (40.41%), Postives = 182/292 (62.33%), Query Frame = 1
Query: 91 ERTQKGKGEGDRNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNP--SPAQGSKELPVLIHESESHMLDGRSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSSIDLHA--GAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKFMA 954
+R ++ G G+R I LHPL ++ +DH TR G + +VIG LFG Q+GLDV++YD+ E+ V D + L++ V + ++ V+P +E+LGWYTVG++V DL R + +FN +PLF+L++P K+LPV + ESE HML+G +FV+ PF++ET++ E ISV+H++K P S LH G V +++ L ++++L RFL+ KNG+ +D LLR ISS+CNQLP M F F++E+ND+L V +LA++ K A + N + D+F A
Sbjct: 16 QREERSSGGGERQIQLHPLVLMNAADHFTRERRGCAPGASPPQVIGALFGVQSGLDVAVYDSFELKYDVVNGD-VQLDKEFVTSRIQQFSQVFPGFELLGWYTVGSKVQPSDLATHRSIMEFNESPLFMLLDPVSKALNTKKKLPVTLFESELHMLNGAPTMLFVKAPFKIETSETEGISVDHISKIAPIGDSSKSSLHPYLGNVRDAMKMLDRQVDVLVRFLQAMKNGDAPMDRNLLRHISSVCNQLPAMTSKSFDASFLQEYNDALLVAFLATLTKGATNANTVVDRFSA 306
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: UPI000C87477B (COP9 signalosome complex subunit 6 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C87477B) HSP 1 Score: 227 bits (579), Expect = 1.560e-64 Identity = 113/280 (40.36%), Postives = 180/280 (64.29%), Query Frame = 1
Query: 136 LHPLTVITISDHHTRVST------GGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHMLDGRSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSS---IDLHAGAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKF 948
LHPL ++ ISDHHTRV GGG+ AGGRV G + G Q G V I+++ E+ C + L+ +EK+ +LY V+P + +LGWY+ G++ E D+ I R + N +P+++L+NPS K+LPV I+ESE H++DG Q IFV+ + +ET +AE+ISV+HVA P+DG S+ + H + ++++ L +R++IL ++L + G++ +D LLRQ+SS+ +LPTM+ +F ++F+ EFND+L +TYLA + ++N+L DKF
Sbjct: 13 LHPLVIVNISDHHTRVKAQGLYHGGGGSGGAGGRVFGCVIGVQRGRTVEIFNSFEILCDP---ETHTLDRPFLEKKMELYKKVFPNFYVLGWYSTGSDAQESDMLIHRALMDINESPVYVLLNPSTNPTRKDLPVTIYESELHVIDGIPQLIFVRSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVKILHQYLVAMERGDIPLDNSLLRQVSSLLRRLPTMESEKFQDDFLMEFNDTLLITYLAMFTNCSSTMNELVDKF 289
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: F0Y0C1_AURAN (Trehalase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0C1_AURAN) HSP 1 Score: 243 bits (620), Expect = 4.530e-64 Identity = 126/282 (44.68%), Postives = 181/282 (64.18%), Query Frame = 1
Query: 106 GKGEGDRNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHMLDGRSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSSIDLHAGAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKFM 951
G+ R++ LHPL ++ +SDH TRV GG V+GLLFG Q GLDV+++DA+E++ ADG L+ ++KQ +L+T VY E+LGWY + T L + R+ +N +PL L+M+P P+ SK+LP+ I E+E ++D +F LPF LET QAE+IS+E VAK PTDG S++D H AV TSLRTL +R+ +L +L G D+ LLRQ+S +C+ LPT + + MR++ND+L V+YLASV K+A +VNDL++KFM
Sbjct: 834 GRAATQRHVGLHPLAIVGVSDHFTRVKLGGARVAPDSPVLGLLFGKQVGLDVAVFDAIELSM----ADG-KLDHDFLKKQAELFTDVYADRELLGWYCLAKSATPAHLDLHREFLAYNESPLCLMMDPEPSAESKDLPITILEAEVQVVDDVPTMLFATLPFTLETLQAERISMEIVAKTAPTDGESALDTHVEAVDTSLRTLGSRVAVLVDYLRAVAGGKAEPDFALLRQVSGLCDTLPTGGAPDQTRDLMRDYNDALMVSYLASVTKNANAVNDLSEKFM 1110
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Match: A0A8J2WWX0_9STRA (Trehalase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWX0_9STRA) HSP 1 Score: 240 bits (612), Expect = 1.940e-63 Identity = 125/298 (41.95%), Postives = 191/298 (64.09%), Query Frame = 1
Query: 76 AAVSAERTQKGKGEGD----RNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGLDVSIYDAMEVACTAVGADGLALNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSAPLFLLMNPSPAQGSKELPVLIHESESHMLDGRSQSIFVQLPFQLETTQAEQISVEHVAKATPTDGMSSIDLHAGAVSTSLRTLLARIEILRRFLEETKNGNVTVDYPLLRQISSICNQLPTM--DGAQFSEEFMREFNDSLSVTYLASVQKSAGSVNDLADKFM 951
A+ A T+KG+ R + LHPL ++ +SDH TRVS GG Q AG V+GLLFG Q GL+V + DA+EV T + ++ +E+ K LYT VY +++GWY V T L + + K+N +PLFLLM+P P Q +K+LP+ ++E+E H L +++F +PFQLETTQ E++++E VA+ TD +D H ++ TSL+TL AR+ LR +L + G V D+ LLR++ ++C++LP++ DGA F E F+R++ND+L+ +LA+ K+A +VNDL+DKF+
Sbjct: 682 ASAHASATKKGRMAAAESTARTVALHPLAIVGVSDHFTRVSVGGSRQGAGSPVVGLLFGMQRGLEVDVVDAIEVHLT----EATKVDAQFLEQSKALYTEVYEDRDLVGWYAVAPAPTANHLALHEEFVKYNESPLFLLMDPQPQQDAKDLPIQVYETEVHDL----KTVFATVPFQLETTQTERVAMEAVAQTGCTDRELMLDTHVASLDTSLKTLAARVRALRDYLAAVRAGTVAADHSLLRKLGALCDRLPSLKSDGA-FEEAFLRDYNDALATAFLATATKNAAAVNDLSDKFV 970 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig8.164.1 >prot_P-littoralis_Contig8.164.1 ID=prot_P-littoralis_Contig8.164.1|Name=mRNA_P-littoralis_Contig8.164.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=327bp MEVDACPDMGVEEKKGEEPAVPAATAAVSAERTQKGKGEGDRNIMLHPLTback to top mRNA from alignment at P-littoralis_Contig8:703473..710015- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig8.164.1 ID=mRNA_P-littoralis_Contig8.164.1|Name=mRNA_P-littoralis_Contig8.164.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6543bp|location=Sequence derived from alignment at P-littoralis_Contig8:703473..710015- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig8:703473..710015- >mRNA_P-littoralis_Contig8.164.1 ID=mRNA_P-littoralis_Contig8.164.1|Name=mRNA_P-littoralis_Contig8.164.1|organism=Pylaiella littoralis U1_48|type=CDS|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig8:703473..710015- (Pylaiella littoralis U1_48)back to top |