mRNA_P-littoralis_Contig8.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.47.1
Unique NamemRNA_P-littoralis_Contig8.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig8.47.1 vs. uniprot
Match: D8LB53_ECTSI (Glutamine amidotransferase type-2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB53_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.440e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 VWCEMAKGDMLAFHGGQPFSSPDDFRCHLSTTKTIGLPVASNAGA 135
            VWCEMAKGD+LAFHGGQPFSSPDDFR  L T K + + V S+AGA
Sbjct:  258 VWCEMAKGDLLAFHGGQPFSSPDDFRRQLRT-KAVDISVCSDAGA 301
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB53_ECTSI2.440e-1473.33Glutamine amidotransferase type-2 domain-containin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:232292..232429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB53
PFAMsGATase_4
Model size138
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.02e-11
EggNOG OGsCOG0121@1|root,2RXQT@2759|Eukaryota
DescriptionGlutamine amidotransferases class-II
Cds size126
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791633.639923-CDS-P-littoralis_Contig8:232291..2324171680791633.639923-CDS-P-littoralis_Contig8:232291..232417Pylaiella littoralis U1_48CDSP-littoralis_Contig8 232292..232417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791633.6546447-UTR-P-littoralis_Contig8:232417..2324291680791633.6546447-UTR-P-littoralis_Contig8:232417..232429Pylaiella littoralis U1_48UTRP-littoralis_Contig8 232418..232429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.47.1prot_P-littoralis_Contig8.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 232292..232417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.47.1

>prot_P-littoralis_Contig8.47.1 ID=prot_P-littoralis_Contig8.47.1|Name=mRNA_P-littoralis_Contig8.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=42bp
MAKGDMLAFHGGQPFSSPDDFRCHLSTTKTIGLPVASNAGA*
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mRNA from alignment at P-littoralis_Contig8:232292..232429-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.47.1 ID=mRNA_P-littoralis_Contig8.47.1|Name=mRNA_P-littoralis_Contig8.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig8:232292..232429- (Pylaiella littoralis U1_48)
GTTTGGTGCGAGATGGCCAAGGGGGACATGCTAGCCTTCCACGGGGGGCA
GCCCTTCAGCAGCCCCGACGACTTCCGATGCCACCTTAGCACTACCAAAA
CCATCGGTCTCCCCGTTGCCTCAAACGCCGGCGCCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:232292..232429-

>mRNA_P-littoralis_Contig8.47.1 ID=mRNA_P-littoralis_Contig8.47.1|Name=mRNA_P-littoralis_Contig8.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=126bp|location=Sequence derived from alignment at P-littoralis_Contig8:232292..232429- (Pylaiella littoralis U1_48)
ATGGCCAAGGGGGACATGCTAGCCTTCCACGGGGGGCAGCCCTTCAGCAG
CCCCGACGACTTCCGATGCCACCTTAGCACTACCAAAACCATCGGTCTCC
CCGTTGCCTCAAACGCCGGCGCCTAG
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