mRNA_P-littoralis_Contig791.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig791.4.1
Unique NamemRNA_P-littoralis_Contig791.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig791.4.1 vs. uniprot
Match: A0A6H5JJK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.210e-41
Identity = 93/220 (42.27%), Postives = 135/220 (61.36%), Query Frame = 1
Query:    1 MNTPSRLFERITTYSRALRYV----DGYKNHVSSYEEVMRLMDPKKATVHKNTNLSLAAVEYLLRGFADRNTSVRKIEIVMYIAVLKAQDSDG----LAKEVYDRFRYLDDFDRGAMTKIFNLSTCNDRTKLLLDKIMVL--KTKKIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHTSSIATKFGSCFNVKNIQE 630
            M  PS L +RI T + A+R+V    DGY +   SYEEV++ +  +KAT + NTNL  AAVEYL + FA  +TS RKI I +Y+A+    D D     LAKE   RF+ ++++D+  MTKIFN+S CNDR   LLD +     K K +   I+HEF+VEF+ L+F+ ++S+V R Q LT+  Y  + T   +E A    + H SSIA K+  CF ++ +++
Sbjct:    1 MTPPSELSKRIGTCADAVRFVLRGKDGYPSSQESYEEVIQYLPAEKATGYTNTNLVKAAVEYLKKSFATSDTSDRKISIALYVAIYVGHDHDHDDGVLAKEFCKRFQDVENYDKHMMTKIFNMSLCNDRILALLDAVTSSGKKKKDVIALIDHEFRVEFVLLYFNVVKSLVLRGQSLTDFGYPAELTADDVEAAEKTFDNHVSSIANKYWPCFKMEALKK 220          
BLAST of mRNA_P-littoralis_Contig791.4.1 vs. uniprot
Match: A0A6H5KVG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG0_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.460e-35
Identity = 84/214 (39.25%), Postives = 128/214 (59.81%), Query Frame = 1
Query:    7 TPSRLFERITTYSRALRYVDGYKNHV--SSYEEVMRLMDPKKATVHKNTNLSLAAVEYLLRGFADRNTSVRKIEIVMYIAVLKA--QDSDGLAKEVYDRFRYLDDFDRGAMTKIFNLSTCNDRTKLLLDKIMVLKTKKIHPAIEHEFQVEFISLFFDAMESIVSREQ--PLTNLEYVDKATPSQMEGARGVIEKHTSSIATKFGSCFNVKNIQE 630
            T S+LF  I+  S A+RY+  +K     +SY+ VM+ +  +  T H +TNL+ A +E++     D++TS RK+ + + +AV  A  +   GLAKE+ DR R ++DF+R  MT++FNLS   DR   LLD +++ + K +   I+ E  VEF+ LFF  +ESI+ R      + L Y   ATPS M  AR ++EKH S+IA   G CF +K ++E
Sbjct:    2 TTSKLFITISICSEAIRYLRAHKQEEWKTSYDHVMQSLPAEDKTEHVHTNLTKACMEFMKAEVFDKDTSDRKVMVAIRVAVSIAIGEAQRGLAKEICDRLRKVEDFNRYLMTEVFNLSIVTDRVCTLLDDVIIHQKKHVSKDIQQELCVEFVVLFFGIVESILRRGHCHTFSELGYATSATPSDMGNARNILEKHVSAIAAMCGPCFILKALKE 215          
BLAST of mRNA_P-littoralis_Contig791.4.1 vs. uniprot
Match: Q8QND1_ESV1K (EsV-1-151 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND1_ESV1K)

HSP 1 Score: 131 bits (330), Expect = 1.110e-30
Identity = 87/218 (39.91%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    1 MNTPSRLFERITTYSRALRYVDG-----YKNHVSSYEEVMRLMDPKKATVHKNTNLSLAAVEYLLRGFADR--NTSVRKIEIVMYIAVLKAQD---SDGLAKEVYDRFRYLDDFDRGAMTKIFNLSTCNDRTKLLLDKIMVLKTKK-IHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDK-ATPSQMEGARGVIEKHTSSIATKFGSCFNVK 618
            M TP++LFERITT S ALR+  G      ++H +SY  V+               L+ AA  +L  GF     N S RK+EI M +A   A+     DGL K + DRFR L+DFDR  M K+F+LS C+D    LLD IMV K KK +   +E E Q EF+ +FFD + +I+ R +  ++L YV   AT   M  AR  +E+H + IA +  +CF ++
Sbjct:    1 MTTPTKLFERITTCSLALRHGRGDGGEHREHHEASYRRVLGS--------RPEAQLAKAAKSFLRSGFPSGGGNVSDRKVEIAMCVATSIAEGRDREDGLVKAICDRFRGLEDFDRRVMKKVFSLSLCSDSVLTLLDNIMVSKRKKGVLREVERELQAEFVLMFFDILANILKRGESSSDLGYVVAGATAEDMGNARATLERHAAVIADRCCACFRLE 210          
BLAST of mRNA_P-littoralis_Contig791.4.1 vs. uniprot
Match: A0A6H5JFF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.660e-25
Identity = 71/189 (37.57%), Postives = 107/189 (56.61%), Query Frame = 1
Query:  103 MRLMDPKKATVHKNTNLSLAAVEYLLRGFADRN-TSVRKIEIVMYIAVLKAQD--SDGLAKEVYDRFRYLDDFDRGAMTKIFNLSTCNDRTKLLLDKIMVLKTKKIHPAIEHEFQVEFISLFFDAMESIVSREQPLTN---------LEYVDKATPSQMEGARGVIEKHTSSIATKFGSCFNVKNIQEA 633
            M+ +  +  T H +TNL+ A +E++     D++  S RK  I   +A+  A D    GLAKE+ DR R ++D +R  M ++FNLS   DR  +LLD +++ + K +   I+HE  VEF+ LFF  +ESI+ R     N         LEY   ATPS M  AR ++EKH S+IA   G CF +K ++++
Sbjct:    1 MQSLPAEDKTEHAHTNLTKACMEFMKAEVFDKDPASDRKARIAFCVAMSIATDRAQTGLAKEICDRLRKVEDLNRHLMVEVFNLSIVTDRVCILLDDVIIHR-KHVSKDIQHELCVEFVLLFFGIVESILRRGHHHGNNNHDFAFGELEYATSATPSDMTNARDILEKHASAIAAMCGPCFKLKALKKS 188          
BLAST of mRNA_P-littoralis_Contig791.4.1 vs. uniprot
Match: A0A6H5JWP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.120e-15
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  217 IEIVMYIAVLKAQDSDGLAKEVYDRFRYLDDFDRGAMTKIFNLSTCNDRTKLLLDKIMVLKTKKIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKAT 531
            + +++  ++   +   GL KE+ DRFR L DFDR  MT++F+LS  NDR ++LL+  +V + K I   I HEF VEF+ LFF  +E++V   + L +  ++D AT
Sbjct:    3 VAVIVATSMATGEAERGLDKEICDRFRRLQDFDRKVMTELFHLSIVNDRVRVLLEDALVRRKKTIGIDIRHEFSVEFVLLFFGVVENVVRTGRRLGDQGHIDIAT 107          
BLAST of mRNA_P-littoralis_Contig791.4.1 vs. uniprot
Match: Q8QNC8_ESV1K (EsV-1-154 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC8_ESV1K)

HSP 1 Score: 87.4 bits (215), Expect = 2.850e-15
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  623 FKKPRAQNSLFPARGGLPRVSIGCELVKFD----------EATVDTLKASLSETNERYEFLETMYAAMMHSSN--EPGVTYRALKLQTFKEFYLETILDREQKEQ 901
             + PR  N+LFPA  G P+VSIGC+ V+F           + T+D LK SL + +E+ EFLE M+AA+ H+SN  +P VTYR L+L++ K F+LE +LD+ Q E+
Sbjct:  218 LRLPRKNNNLFPAGDGFPQVSIGCDPVRFGGVTEDKLENAKNTIDLLKESLMDKDEKGEFLEMMFAAISHASNPRDPVVTYRRLQLESVKHFFLEKMLDKAQAEE 322          
BLAST of mRNA_P-littoralis_Contig791.4.1 vs. uniprot
Match: D8LPH6_ECTSI (EsV-1-154 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.460e-14
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  623 FKKPRAQNSLFPARGGLPRVSIGCELVKFD----------EATVDTLKASLSETNERYEFLETMYAAMMHSSN--EPGVTYRALKLQTFKEFYLETILDREQKEQ 901
             + PR  N+LFPA  G P VSIGC+ V+F           + T+D LK SL + +E+ EFL+ M+A + H+SN  +P VTYR L+L + ++F+LE +LD+ Q E+
Sbjct:  218 LRLPRKNNNLFPAGDGFPNVSIGCQPVQFGGVTEDKLENVKNTIDLLKESLMDKDEKEEFLQMMFAIISHASNPRDPVVTYRRLRLASARDFFLEKVLDKTQAEE 322          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig791.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JJK7_9PHAE4.210e-4142.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVG0_9PHAE1.460e-3539.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QND1_ESV1K1.110e-3039.91EsV-1-151 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JFF2_9PHAE5.660e-2537.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP0_9PHAE1.120e-1540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QNC8_ESV1K2.850e-1545.71EsV-1-154 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPH6_ECTSI7.460e-1442.86EsV-1-154 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig791contigP-littoralis_Contig791:7484..8573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1090
Hectar predicted targeting categoryother localisation
Exons1
Cds size759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791621.7482467-CDS-P-littoralis_Contig791:7483..82421680791621.7482467-CDS-P-littoralis_Contig791:7483..8242Pylaiella littoralis U1_48CDSP-littoralis_Contig791 7484..8242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791621.7921948-UTR-P-littoralis_Contig791:8242..85731680791621.7921948-UTR-P-littoralis_Contig791:8242..8573Pylaiella littoralis U1_48UTRP-littoralis_Contig791 8243..8573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig791.4.1prot_P-littoralis_Contig791.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig791 7484..8242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig791.4.1

>prot_P-littoralis_Contig791.4.1 ID=prot_P-littoralis_Contig791.4.1|Name=mRNA_P-littoralis_Contig791.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MNTPSRLFERITTYSRALRYVDGYKNHVSSYEEVMRLMDPKKATVHKNTN
LSLAAVEYLLRGFADRNTSVRKIEIVMYIAVLKAQDSDGLAKEVYDRFRY
LDDFDRGAMTKIFNLSTCNDRTKLLLDKIMVLKTKKIHPAIEHEFQVEFI
SLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHTSSIATKFG
SCFNVKNIQEAACSKQSVSSARWASTGIYRVRAREIRRSHGRHSESQSLR
DK*
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mRNA from alignment at P-littoralis_Contig791:7484..8573+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig791.4.1 ID=mRNA_P-littoralis_Contig791.4.1|Name=mRNA_P-littoralis_Contig791.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1090bp|location=Sequence derived from alignment at P-littoralis_Contig791:7484..8573+ (Pylaiella littoralis U1_48)
ATGAACACACCTTCTAGGCTGTTTGAAAGGATCACGACCTATTCCCGCGC TCTCCGATACGTCGATGGATATAAGAACCATGTGTCATCATACGAAGAAG TGATGCGACTCATGGACCCGAAAAAGGCCACGGTACACAAGAACACCAAT TTGAGTTTGGCTGCGGTGGAGTATCTCCTACGGGGTTTTGCCGACCGCAA TACTTCTGTTCGCAAGATTGAAATCGTCATGTATATCGCGGTGTTGAAGG CTCAGGACAGCGACGGTCTGGCCAAAGAGGTTTACGATCGCTTCCGGTAC CTTGACGACTTCGACCGAGGCGCGATGACAAAGATTTTCAACCTCTCCAC CTGCAACGACAGAACTAAGCTCCTCCTGGACAAGATCATGGTTCTGAAGA CCAAAAAGATACACCCGGCCATCGAACACGAGTTCCAAGTCGAATTCATC TCGTTGTTTTTCGACGCCATGGAGAGCATTGTGTCTCGCGAGCAGCCTTT GACCAACCTGGAGTATGTGGACAAGGCAACGCCTTCCCAGATGGAAGGTG CTCGAGGAGTCATCGAGAAACACACATCAAGCATCGCCACGAAGTTTGGG TCATGTTTCAATGTAAAGAACATTCAAGAAGCCGCGTGCTCAAAACAGTC TGTTTCCAGCGCGAGGTGGGCTTCCACGGGTATCTATCGGGTGCGAGCTC GTGAAATTCGACGAAGCCACGGTCGACACTCTGAAAGCCAGTCTCTCCGA GACAAATGAGAGGTATGAGTTCCTGGAGACCATGTACGCCGCGATGATGC ATTCGTCTAACGAGCCGGGTGTGACTTATCGAGCGCTGAAGCTTCAAACT TTCAAGGAATTCTACCTTGAAACGATTCTCGACCGAGAGCAGAAGGAGCA AGCCCTGTGTTCAACCCCCGAAACATCGAAAGAGCGTGGCCTTCGTAAAG AACTAGAGAAAGAGGAGGACACTGTTTCACGTCTGAGCGAGAAACTTCTA ACTTTTTCCAAGGAGATATCGCGTTGCAGGGAGGTCATATGTGACATCGA GGAACAACTCGAACGGAAGAGGAATTTCTGCAAAGAGTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig791:7484..8573+

>mRNA_P-littoralis_Contig791.4.1 ID=mRNA_P-littoralis_Contig791.4.1|Name=mRNA_P-littoralis_Contig791.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig791:7484..8573+ (Pylaiella littoralis U1_48)
ATGAACACACCTTCTAGGCTGTTTGAAAGGATCACGACCTATTCCCGCGC
TCTCCGATACGTCGATGGATATAAGAACCATGTGTCATCATACGAAGAAG
TGATGCGACTCATGGACCCGAAAAAGGCCACGGTACACAAGAACACCAAT
TTGAGTTTGGCTGCGGTGGAGTATCTCCTACGGGGTTTTGCCGACCGCAA
TACTTCTGTTCGCAAGATTGAAATCGTCATGTATATCGCGGTGTTGAAGG
CTCAGGACAGCGACGGTCTGGCCAAAGAGGTTTACGATCGCTTCCGGTAC
CTTGACGACTTCGACCGAGGCGCGATGACAAAGATTTTCAACCTCTCCAC
CTGCAACGACAGAACTAAGCTCCTCCTGGACAAGATCATGGTTCTGAAGA
CCAAAAAGATACACCCGGCCATCGAACACGAGTTCCAAGTCGAATTCATC
TCGTTGTTTTTCGACGCCATGGAGAGCATTGTGTCTCGCGAGCAGCCTTT
GACCAACCTGGAGTATGTGGACAAGGCAACGCCTTCCCAGATGGAAGGTG
CTCGAGGAGTCATCGAGAAACACACATCAAGCATCGCCACGAAGTTTGGG
TCATGTTTCAATGTAAAGAACATTCAAGAAGCCGCGTGCTCAAAACAGTC
TGTTTCCAGCGCGAGGTGGGCTTCCACGGGTATCTATCGGGTGCGAGCTC
GTGAAATTCGACGAAGCCACGGTCGACACTCTGAAAGCCAGTCTCTCCGA
GACAAATGA
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